Fine-scale spatial structuring of genotypes and phenotypes in natural populations of Asclepias syriaca

Author(s):  
Angela Ricono ◽  
Nichole W. Gustafson ◽  
Erin Eichenberger ◽  
Katherine Stahl ◽  
Hannah Call ◽  
...  
2006 ◽  
Vol 19 (4) ◽  
pp. 1190-1201 ◽  
Author(s):  
M. S. OLSON ◽  
A. V. GRAF ◽  
K. R. NILES

2019 ◽  
Vol 10 (1) ◽  
Author(s):  
Alessandra Riva ◽  
Orest Kuzyk ◽  
Erica Forsberg ◽  
Gary Siuzdak ◽  
Carina Pfann ◽  
...  

Abstract Compartmentalization of the gut microbiota is thought to be important to system function, but the extent of spatial organization in the gut ecosystem remains poorly understood. Here, we profile the murine colonic microbiota along longitudinal and lateral axes using laser capture microdissection. We found fine-scale spatial structuring of the microbiota marked by gradients in composition and diversity along the length of the colon. Privation of fiber reduces the diversity of the microbiota and disrupts longitudinal and lateral gradients in microbiota composition. Both mucus-adjacent and luminal communities are influenced by the absence of dietary fiber, with the loss of a characteristic distal colon microbiota and a reduction in the mucosa-adjacent community, concomitant with depletion of the mucus layer. These results indicate that diet has not only global but also local effects on the composition of the gut microbiota, which may affect function and resilience differently depending on location.


2017 ◽  
Vol 4 (2) ◽  
pp. 160548 ◽  
Author(s):  
David L. J. Vendrami ◽  
Luca Telesca ◽  
Hannah Weigand ◽  
Martina Weiss ◽  
Katie Fawcett ◽  
...  

The field of molecular ecology is transitioning from the use of small panels of classical genetic markers such as microsatellites to much larger panels of single nucleotide polymorphisms (SNPs) generated by approaches like RAD sequencing. However, few empirical studies have directly compared the ability of these methods to resolve population structure. This could have implications for understanding phenotypic plasticity, as many previous studies of natural populations may have lacked the power to detect genetic differences, especially over micro-geographic scales. We therefore compared the ability of microsatellites and RAD sequencing to resolve fine-scale population structure in a commercially important benthic invertebrate by genotyping great scallops ( Pecten maximus ) from nine populations around Northern Ireland at 13 microsatellites and 10 539 SNPs. The shells were then subjected to morphometric and colour analysis in order to compare patterns of phenotypic and genetic variation. We found that RAD sequencing was superior at resolving population structure, yielding higher F st values and support for two distinct genetic clusters, whereas only one cluster could be detected in a Bayesian analysis of the microsatellite dataset. Furthermore, appreciable phenotypic variation was observed in size-independent shell shape and coloration, including among localities that could not be distinguished from one another genetically, providing support for the notion that these traits are phenotypically plastic. Taken together, our results suggest that RAD sequencing is a powerful approach for studying population structure and phenotypic plasticity in natural populations.


2019 ◽  
Author(s):  
Jakob McBroome ◽  
David Liang ◽  
Russell Corbett-Detig

AbstractChromosomal inversions are among the primary drivers of genome structure evolution in a wide range of natural populations. While there is an impressive array of theory and empirical analyses that has identified conditions under which inversions can be positively selected, comparatively little data is available on the fitness impacts of these genome structural rearrangements themselves. Because inversion breakpoints can interrupt functional elements and alter chromatin domains, each rearrangement may in itself have strong effects on fitness. Here, we compared the fine-scale distribution of low frequency inversion breakpoints with those of high frequency inversions and inversions that have fixed between Drosophila species. We identified important differences that may influence inversion fitness. In particular, proximity to insulator elements, large tandem duplications adjacent to the breakpoints, and minimal impacts on gene coding spans are more prevalent in high frequency and fixed inversions than in rare inversions. The data suggest that natural selection acts both to preserve both genes and larger cis-regulatory networks in the occurrence and spread of rearrangements. These factors may act to limit the availability of high fitness arrangements when suppressed recombination is favorable.


2005 ◽  
Vol 83 (3) ◽  
pp. 492-497 ◽  
Author(s):  
Reuven Dukas ◽  
Douglass H Morse ◽  
Sean Myles

Learning difficult tasks requires an extended period of experience. It is unclear, however, what level of experience is exhibited by individuals in natural populations. If many individuals are rather inexperienced at any given time, they may not possess subtle information concerning, for example, local distributions of reward and danger, which may require long acquisition periods. To quantify individual experience in field settings, we conducted a field study involving extensive marking of individual honey bees (Apis mellifera L., 1758) and bumble bees (Bombus vagans Smith, 1854 and Bombus terricola Kirby, 1837) visiting milkweed (Asclepias syriaca L.) patches that harbored crab spiders (Misumena vatia (Clerck, 1757)), which prey on bees. The vast majority of bees either were fully inexperienced or had little experience with the specific flower patch that they were visiting. It is likely that such inexperienced bees do not possess subtle local information involving either reward or danger. Contrary to our prediction, even the most experienced bees did not avoid experimental patches harboring crab spiders, perhaps because even these bees did not possess sufficient experience. Our results indicate that conclusions from controlled laboratory experiments may not readily generalize to natural field settings. Thus, we must gather additional data on the long-term behavior of individually marked bees in natural conditions to better understand the interactions among flowers, bees, and bees' predators.


2016 ◽  
Vol 544 ◽  
pp. 131-142 ◽  
Author(s):  
S Teixeira ◽  
GA Pearson ◽  
R Candeias ◽  
C Madeira ◽  
M Valero ◽  
...  

2020 ◽  
Vol 12 (8) ◽  
pp. 1378-1391 ◽  
Author(s):  
Jakob McBroome ◽  
David Liang ◽  
Russell Corbett-Detig

Abstract Chromosomal inversions are among the primary drivers of genome structure evolution in a wide range of natural populations. Although there is an impressive array of theory and empirical analyses that have identified conditions under which inversions can be positively selected, comparatively little data are available on the fitness impacts of these genome structural rearrangements themselves. Because inversion breakpoints can disrupt functional elements and alter chromatin domains, the precise positioning of an inversion’s breakpoints can strongly affect its fitness. Here, we compared the fine-scale distribution of low-frequency inversion breakpoints with those of high-frequency inversions and inversions that have gone to fixation between Drosophila species. We identified a number of differences among frequency classes that may influence inversion fitness. In particular, breakpoints that are proximal to insulator elements, generate large tandem duplications, and minimize impacts on gene coding spans which are more prevalent in high-frequency and fixed inversions than in rare inversions. The data suggest that natural selection acts to preserve both genes and larger cis-regulatory networks in the occurrence and spread of rearrangements. These factors may act to limit the availability of high-fitness arrangements when suppressed recombination is favorable.


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