Association of CLOCK gene variants with semen quality in idiopathic infertile Han-Chinese males

2012 ◽  
Vol 25 (5) ◽  
pp. 536-542 ◽  
Author(s):  
Jie Zhang ◽  
Xinliang Ding ◽  
Yingchun Li ◽  
Yankai Xia ◽  
Jihua Nie ◽  
...  
2011 ◽  
Vol 491 (1) ◽  
pp. 83-86 ◽  
Author(s):  
Nan-Nan Yu ◽  
Jin-Tai Yu ◽  
Jian-Ting Xiao ◽  
Hao-Wen Zhang ◽  
Rui-Chun Lu ◽  
...  

2019 ◽  
Vol 12 (1) ◽  
Author(s):  
Zhongzhong Chen ◽  
Xiaoling Lin ◽  
Yunping Lei ◽  
Haitao Chen ◽  
Richard H. Finnell ◽  
...  

Abstract Background Hypospadias risk–associated gene variants have been reported in populations of European descent using genome-wide association studies (GWASs). There is little known at present about any possible hypospadias risk associations in Han Chinese populations. Methods To systematically investigate hypospadias risk–associated gene variants in Chinese patients, we performed the first GWAS in a Han Chinese cohort consisting of 197 moderate-severe hypospadias cases and 933 unaffected controls. Suggestive loci (p < 1 × 10− 4) were replicated in 118 cases and 383 controls, as well as in a second independent validation population of 137 cases and 190 controls. Regulatory and protein-protein interactions (PPIs) were then conducted for the functional analyses of candidate variants. Results We identified rs11170516 with the risk allele G within the SP1/SP7 region that was independently associated with moderate-severe hypospadias [SP1/SP7, rs11170516, Pcombine = 3.5 × 10− 9, odds ratio (OR) = 1.96 (1.59–2.44)]. Results also suggested that rs11170516 is associated with the expression of SP1 as a cis-expression quantitative trait locus (cis-eQTL). Protein SP1 could affect the risk of hypospadias via PPIs. Conclusions We performed the first GWAS of moderate-severe hypospadias in a Han Chinese cohort, and identified one novel susceptibility cis-acting regulatory locus at 12q13.13, which may regulate a variety of hypospadias-related pathways by affecting proximal SP1 gene expression and subsequent PPIs. This study complements known common hypospadias risk-associated variants and provides the possible role of cis-acting regulatory variant in causing hypospadias.


2017 ◽  
Vol 210 ◽  
pp. 14-18 ◽  
Author(s):  
Masahiro Suzuki ◽  
Sara Dallaspezia ◽  
Clara Locatelli ◽  
Cristina Lorenzi ◽  
Makoto Uchiyama ◽  
...  

Andrologia ◽  
2012 ◽  
Vol 45 (5) ◽  
pp. 339-344 ◽  
Author(s):  
L. Lazaros ◽  
N. Xita ◽  
A. Takenaka ◽  
N. Sofikitis ◽  
G. Makrydimas ◽  
...  

2015 ◽  
Vol 32 (8) ◽  
pp. 1156-1161 ◽  
Author(s):  
Francesco Benedetti ◽  
Roberta Riccaboni ◽  
Sara Dallaspezia ◽  
Clara Locatelli ◽  
Enrico Smeraldi ◽  
...  

2014 ◽  
Vol 21 (4) ◽  
pp. 629-638 ◽  
Author(s):  
Thérèse Truong ◽  
Benoît Liquet ◽  
Florence Menegaux ◽  
Sabine Plancoulaine ◽  
Pierre Laurent-Puig ◽  
...  

Night shift work has been associated with an increased risk of breast cancer pointing to a role of circadian disruption. We investigated the role of circadian clock gene polymorphisms and their interaction with nightwork in breast cancer risk in a population-based case–control study in France including 1126 breast cancer cases and 1174 controls. We estimated breast cancer risk associated with each of the 577 single nucleotide polymorphisms (SNPs) in 23 circadian clock genes. We also used a gene- and pathway-based approach to investigate the overall effect on breast cancer of circadian clock gene variants that might not be detected in analyses based on individual SNPs. Interactions with nightwork were tested at the SNP, gene, and pathway levels. We found that two SNPs inRORA(rs1482057 and rs12914272) were associated with breast cancer in the whole sample and among postmenopausal women. In this subpopulation, we also reported an association with rs11932595 inCLOCK, and withCLOCK,RORA, andNPAS2in the analyses at the gene level. Breast cancer risk in postmenopausal women was also associated with overall genetic variation in the circadian gene pathway (P=0.04), but this association was not detected in premenopausal women. There was some evidence of an interaction betweenPER1and nightwork in breast cancer in the whole sample (P=0.024), although the effect was not statistically significant after correcting for multiple testing (P=0.452). Our results support the hypothesis that circadian clock gene variants modulate breast cancer risk.


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