Analysis of mitochondrial genomics and transcriptomics reveal abundant RNA edits and differential editing status in moth orchid, Phalaenopsis aphrodite subsp. formosana

2020 ◽  
Vol 267 ◽  
pp. 109304
Author(s):  
Ting-Chieh Chen ◽  
Yu-Ya Su ◽  
Chi-Hsuan Wu ◽  
Yu-Chang Liu ◽  
Chih-Hao Huang ◽  
...  
2019 ◽  
Vol 60 (10) ◽  
pp. 2243-2254 ◽  
Author(s):  
Yi-Jyun Lin ◽  
Yu-Chung Chen ◽  
Kuan-Chieh Tseng ◽  
Wen-Chi Chang ◽  
Swee-Suak Ko

AbstractChloroplast movement is important for plants to avoid photodamage and to perform efficient photosynthesis. Phototropins are blue light receptors in plants that function in chloroplast movement, phototropism, stomatal opening, and they also affect plant growth and development. In this study, full-length cDNAs of two PHOTOTROPIN genes, PaPHOT1 and PaPHOT2, were cloned from a moth orchid Phalaenopsis aphrodite, and their functions in chloroplast movement were investigated. Phylogenetic analysis showed that PaPHOT1 and PaPHOT2 orthologs were highly similar to PHOT1 and PHOT2 of the close relative Phalaenopsis equestris, respectively, and clustered with monocots PHOT1 and PHOT2 orthologs, respectively. Phalaenopsis aphrodite expressed a moderate level of PaPHOT1 under low blue light of 5 μmol�m−2�s−1 (BL5) and a high levels of PaPHOT1 at >BL100. However, PaPHOT2 was expressed at low levels at <BL50 but expressed at high levels at > BL100. Analysis of light-induced chloroplast movements using the SPAD method indicated that orchid accumulated chloroplasts at <BL10. The chloroplast avoidance response was detectable at >BL25 and significant chloroplast avoidance movement was observed at >BL100. Virus-induced gene silencing of PaPHOTs in orchids showed decreased gene expression of PaPHOTs and reduced both chloroplast accumulation and avoidance responses. Heterologous expression of PaPHOT1 in Arabidopsis phot1phot2 double mutant recovered chloroplast accumulation response at BL5, but neither PaPHOT1 nor PaPHOT2 was able to restore mutant chloroplast avoidance at BL100. Overall, this study showed that phototropins mediate chloroplast movement in Phalaenopsis orchid is blue light-dependent but their function is slightly different from Arabidopsis which might be due to gene evolution.


2013 ◽  
Vol 84 (4-5) ◽  
pp. 529-548 ◽  
Author(s):  
Ya-Ting Chao ◽  
Chun-Lin Su ◽  
Wen-Han Jean ◽  
Wan-Chieh Chen ◽  
Yao-Chien Alex Chang ◽  
...  

2017 ◽  
Vol 8 ◽  
Author(s):  
Chi-Chu Tsai ◽  
Yu-Jen Wu ◽  
Chiou-Rong Sheue ◽  
Pei-Chun Liao ◽  
Ying-Hao Chen ◽  
...  

2019 ◽  
Vol 20 (21) ◽  
pp. 5406 ◽  
Author(s):  
Yi-Jyun Lin ◽  
Min-Jeng Li ◽  
Hung-Chien Hsing ◽  
Tien-Kuan Chen ◽  
Ting-Ting Yang ◽  
...  

Double-spikes Phalaenopsis orchids have greater market value than those with single-spike. In this study, a gene designated as Spike Activator 1 (SPK1), which encodes a basic helix-loop-helix (bHLH) transcription factor, was isolated and characterized from Phalaenopsis aphrodite (moth orchid). SPK1 was highly expressed in the meristematic tissues. In the axillary bud, SPK1 was highly upregulated by a moderately low temperature of 20 °C but downregulated by a spike inhibition temperature of 30 °C. SPK1 protein is localized in the nucleus. Another bHLH, bHLH35, which is also highly expressed in young tissues in the same way as SPK1 was also identified. In contrast to SPK1, bHLH35 transcripts are downregulated at 20 °C but upregulated at 30 °C. Bimolecular florescence complementation assay and yeast two-hybrid assays indicated that SPK1 interacts with bHLH35 and forms a heterodimer. Virus-induced gene silencing (VIGS) showed that 7 out of 15 vector control plants produced double spikes but that only 1 out of 15 VIGS-spk1 plants produced double spikes. RT-qPCR results indicated that VIGS-spk1 downregulated gene expression levels of SPK1, FT, CYCB, and EXPA8. Overall, we propose that SPK1 plays an essential role in early axillary bud development and spike initiation of P. aphrodite.


PLoS ONE ◽  
2013 ◽  
Vol 8 (11) ◽  
pp. e80462 ◽  
Author(s):  
Chun-lin Su ◽  
Wan-Chieh Chen ◽  
Ann-Ying Lee ◽  
Chun-Yi Chen ◽  
Yao-Chien Alex Chang ◽  
...  

2013 ◽  
Vol 29 (7) ◽  
pp. 1031-1039 ◽  
Author(s):  
Phumla Z. Sinxadi ◽  
Joel A. Dave ◽  
David C. Samuels ◽  
Jeannine M. Heckmann ◽  
Gary Maartens ◽  
...  

2020 ◽  
Vol 8 (2) ◽  
pp. 383
Author(s):  
Mukhaila Iryani ◽  
Yusnita Yusnita ◽  
Dwi Hapsoro ◽  
Kukuh Setiawan ◽  
Agus Karyanto

Hybrid moth orchid (genus Phalaenopsis) is one of the most popular ornamentals in Indonesia. It has beautiful and long-lasting flowers, but cultivating this orchid is still become a challenging issues due to the need of specific condition to grow and long time period to re-blooming. Plant growth regulators (PGR) (i.e. Benzyladenine (BA)) has been widely documented as a flower-inducing substance in several orchids. However, the optimal concentration and its mechanism in inducing flower-stalk bud and re-blooming is still unclear. This research aimed to study the effects of BA application in the form of lanolin paste on hybrid Phalaenopsis flower-stalk buds. We conducted this study using completely randomized design with four replications at the greenhouse laboratory Faculty of Agriculture University of Lampung on August to December 2018. We divided the orchid into 5 group of BA concentration (0, 1000, 1500, 3000, or 6000 ppm). The sheath of the fourth or fifth buds of the flowers were carefully opened, then it smeared with BA. The percentage of bud break into flower spike or keiki, length of shoots or spike and number of open flowers were recorded until 10 weeks of observation. The results showed that, neither of the buds under the control treatment (without BA), 1000 ppm nor 1500 ppm BA broke and grew into keiki or spike. On the other hand, application of BA at 3000 ppm or 6000 ppm successfully induced 100% flower spikes on the buds treated. No keiki was formed in all buds treated. In addition, treatment of the buds with 6000 ppm BA produced longer flower spikes as well as more open flowers. We conclude that the application of BA (minimal 3000 ppm) successfully induced flower spike of  hybrid Phalaenopsis.


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