scholarly journals Single-Cell Transcriptome Profiling of Mouse and hESC-Derived Pancreatic Progenitors

2018 ◽  
Vol 11 (6) ◽  
pp. 1551-1564 ◽  
Author(s):  
Nicole A.J. Krentz ◽  
Michelle Y.Y. Lee ◽  
Eric E. Xu ◽  
Shannon L.J. Sproul ◽  
Alexandra Maslova ◽  
...  
2018 ◽  
Author(s):  
Nicole A. J. Krentz ◽  
Michelle Lee ◽  
Eric E. Xu ◽  
Shugo Sasaki ◽  
Francis C. Lynn

SummaryHuman embryonic stem cells (hESCs) are a potential unlimited source of insulin-producing β-cells for diabetes treatment. A greater understanding of how β-cells form during embryonic development will improve current hESC differentiation protocols. As β-cells are formed from NEUROG3-expressing endocrine progenitors, this study focused on characterizing the single-cell transcriptomes of mouse and hESC-derived endocrine progenitors. To do this, 7,223 E15.5 and 6,852 E18.5 single cells were isolated from Neurog3-Cre; Rosa26mT/mG embryos, allowing for enrichment of endocrine progenitors (yellow; tdTomato + EGFP) and endocrine cells (green; EGFP). From a NEUROG3-2A-eGFP CyT49 hESC reporter line (N5-5), 4,497 hESC-derived endocrine progenitor cells were sequenced. Differential expression analysis reveals enrichment of markers that are consistent with progenitor, endocrine, or novel cell-state populations. This study characterizes the single-cell transcriptomes of mouse and hESC-derived endocrine progenitors and serves as a resource (https://lynnlab.shinyapps.io/embryonic_pancreas/) for improving the formation of functional β-like cells from hESCs.


Cell Reports ◽  
2019 ◽  
Vol 27 (7) ◽  
pp. 2241-2247.e4 ◽  
Author(s):  
Christine N. Shulse ◽  
Benjamin J. Cole ◽  
Doina Ciobanu ◽  
Junyan Lin ◽  
Yuko Yoshinaga ◽  
...  

2017 ◽  
Vol 525 (12) ◽  
pp. 2735-2781 ◽  
Author(s):  
Lauren A. Laboissonniere ◽  
Gregory M. Martin ◽  
Jillian J. Goetz ◽  
Ran Bi ◽  
Brock Pope ◽  
...  

2020 ◽  
Vol 6 (34) ◽  
pp. eaaz2978 ◽  
Author(s):  
Xiaoying Fan ◽  
Yuanyuan Fu ◽  
Xin Zhou ◽  
Le Sun ◽  
Ming Yang ◽  
...  

Neurogenesis processes differ in different areas of the cortex in many species, including humans. Here, we performed single-cell transcriptome profiling of the four cortical lobes and pons during human embryonic and fetal development. We identified distinct subtypes of neural progenitor cells (NPCs) and their molecular signatures, including a group of previously unidentified transient NPCs. We specified the neurogenesis path and molecular regulations of the human deep-layer, upper-layer, and mature neurons. Neurons showed clear spatial and temporal distinctions, while glial cells of different origins showed development patterns similar to those of mice, and we captured the developmental trajectory of oligodendrocyte lineage cells until the human mid-fetal stage. Additionally, we verified region-specific characteristics of neurons in the cortex, including their distinct electrophysiological features. With systematic single-cell analysis, we decoded human neuronal development in temporal and spatial dimensions from GW7 to GW28, offering deeper insights into the molecular regulations underlying human neurogenesis and cortical development.


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