Global mitochondrial DNA phylogeography and biogeographic history of the antitropically and longitudinally disjunct marine bryozoan Membranipora membranacea L. (Cheilostomata): Another cryptic marine sibling species complex?

2008 ◽  
Vol 49 (3) ◽  
pp. 893-908 ◽  
Author(s):  
H SCHWANINGER
Keyword(s):  
Mitochondrial Dna ◽  
Sibling Species ◽  
Species Complex ◽  
Membranipora Membranacea ◽  
Biogeographic History ◽  
History Of ◽  
Marine Bryozoan

scholarly journals Genetic structure and biogeographic history of the Bicknell’s Thrush/ Gray-cheeked Thrush species complex

The Auk ◽  
2019 ◽  
Vol 137 (1) ◽  
Author(s):  
Alyssa M Fitzgerald ◽  
Jason Weir ◽  
Joel Ralston ◽  
Ian G Warkentin ◽  
Darroch M Whitaker ◽  
...  
Keyword(s):  
Genetic Structure ◽  
Late Pleistocene ◽  
Species Complex ◽  
Extended Period ◽  
Genetic Data ◽  
Distribution Models ◽  
Biogeographic History ◽  
History Of ◽  
Low Levels ◽  
Bicknell's Thrush

Abstract We examined species limits, admixture, and genetic structure among populations in the Bicknell’s Thrush (Catharus bicknelli)–Gray-cheeked Thrush (C. minimus) species complex to establish the geographic and temporal context of speciation in this group, which is a model system in ecology and a high conservation priority. We obtained mitochondrial ND2 sequences from 186 Bicknell’s Thrushes, 77 Gray-cheeked Thrushes, and 55 individuals of their closest relative, the Veery (C. fuscescens), and genotyped a subset of individuals (n = 72) at 5,633 anonymous single nucleotide polymorphic (SNP) loci. Between-species sequence divergence was an order of magnitude greater than divergence within each species, divergence was dated to the late Pleistocene (420 kbp) based on Bayesian coalescence estimation, and a coalescent model (IMa) revealed almost no gene flow between species based on ND2. SNP data were consistent with mitochondrial results and revealed low levels of admixture among species (3 of 37 Bicknell’s Thrushes, no Gray-cheeked Thrushes, and no Veeries were >2% admixed). Species distribution models projected to the Last Glacial Maximum suggest that Bicknell’s Thrush and Gray-cheeked Thrush resided in primarily allopatric refugia in the late Pleistocene, consistent with the genetic data that support reproductive isolation over an extended period of time. Our genetic data suggest that both species underwent demographic expansions, possibly as they expanded out of Pleistocene refugia into their current ranges. We conclude that Bicknell’s Thrush and Gray-cheeked Thrush are 2 distinct species-level lineages despite low levels of Gray-cheeked Thrush introgression in Bicknell’s Thrushes, and divergence has been maintained by a long history of allopatry in subtly different habitats. Their unique phylogeography among boreal forest birds indicates that either cryptic species breaks in eastern North America are still undiscovered, or another factor, such as divergent natural selection, high migratory connectivity, or interspecific competition, played a role in their divergence.

scholarly journals Recent and Rapid Radiation of the Highly Endangered Harlequin Frogs (Atelopus) into Central America Inferred from Mitochondrial DNA Sequences

Diversity ◽  
2020 ◽  
Vol 12 (9) ◽  
pp. 360
Author(s):  
Juan Ramírez ◽  
César Jaramillo ◽  
Erik Lindquist ◽  
Andrew Crawford ◽  
Roberto Ibáñez
Keyword(s):  
Mitochondrial Dna ◽  
South America ◽  
Central America ◽  
Dna Sequences ◽  
Central American ◽  
Tree Model ◽  
South American Species ◽  
Biogeographic History ◽  
Museum Samples ◽  
History Of

Populations of amphibians are experiencing severe declines worldwide. One group with the most catastrophic declines is the Neotropical genus Atelopus (Anura: Bufonidae). Many species of Atelopus have not been seen for decades and all eight Central American species are considered “Critically Endangered”, three of them very likely extinct. Nonetheless, the taxonomy, phylogeny, and biogeographic history of Central American Atelopus are still poorly known. In this study, the phylogenetic relationships among seven of the eight described species in Central America were inferred based on mitochondrial DNA sequences from 103 individuals, including decades-old museum samples and two likely extinct species, plus ten South American species. Among Central American samples, we discovered two candidate species that should be incorporated into conservation programs. Phylogenetic inference revealed a ladderized topology, placing species geographically furthest from South America more nested in the tree. Model-based ancestral area estimation supported either one or two colonization events from South America. Relaxed-clock analysis of divergence times indicated that Atelopus colonized Central America prior to 4 million years ago (Ma), supporting a slightly older than traditional date for the closure of the Isthmus. This study highlights the invaluable role of museum collections in documenting past biodiversity, and these results could guide future conservation efforts. An abstract in Spanish (Resumen) is available as supplementary material.

Mitochondrial and ribosomal DNA variation among members of the Anopheles quadrimaculatus (Diptera: Culicidae) species complex

Genome ◽  
1992 ◽  
Vol 35 (6) ◽  
pp. 939-950 ◽  
Author(s):  
Sharon E. Mitchell ◽  
Sudhir K. Narang ◽  
Andrew F. Cockburn ◽  
J. A. Seawright ◽  
Michael Goldenthal
Keyword(s):  
Mitochondrial Dna ◽  
Ribosomal Dna ◽  
Sibling Species ◽  
Species Complex ◽  
Restriction Enzymes ◽  
Dna Variation ◽  
Restriction Patterns ◽  
Genetic Structure Of Populations ◽  
Anopheles Quadrimaculatus ◽  
Species Specific

The extent of intra- and inter-specific variation in mitochondrial DNA and nuclear ribosomal RNA gene restriction sites was determined for the four sibling species of the Anopheles quadrimaculatus complex. Individual mosquitoes were identified by allozyme analysis according to previously published keys, and the total genomic DNA of these same individuals was then cleaved with restriction enzymes. Restriction maps of mitochondrial DNA, including the positions of variable sites, were constructed for each species. No evidence for interspecific hybridization was found in the populations surveyed. There was little variation in restriction patterns within any given species, but differences occurred among the four. Three restriction enzymes (AvaI, HindIII, and PvuII) yielded species-specific DNA restriction patterns for the mitochondrial DNA, while AvaI and HindIII produced diagnostic patterns for the ribosomal DNA. Thus, restriction patterns were very useful for detecting cryptic species but less appropriate than isozymes for studying genetic structure of populations within species.Key words: mtDNA, rDNA, Anopheles quadrimaculatus, species complex, sibling species.

scholarly journals Wolbachia affects mitochondrial population structure in two systems of closely related Palaearctic blue butterflies

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Alena Sucháčková Bartoňová ◽  
Martin Konvička ◽  
Jana Marešová ◽  
Martin Wiemers ◽  
Nikolai Ignatev ◽  
...  
Keyword(s):  
Mitochondrial Dna ◽  
Population Structure ◽  
Species Complex ◽  
Mitochondrial Gene ◽  
Mitochondrial Structure ◽  
Distribution Ranges ◽  
Mitochondrial Population ◽  
Two Systems ◽  
History Of ◽  
Mitochondrial Phylogeny

AbstractThe bacterium Wolbachia infects many insect species and spreads by diverse vertical and horizontal means. As co-inherited organisms, these bacteria often cause problems in mitochondrial phylogeny inference. The phylogenetic relationships of many closely related Palaearctic blue butterflies (Lepidoptera: Lycaenidae: Polyommatinae) are ambiguous. We considered the patterns of Wolbachia infection and mitochondrial diversity in two systems: Aricia agestis/Aricia artaxerxes and the Pseudophilotes baton species complex. We sampled butterflies across their distribution ranges and sequenced one butterfly mitochondrial gene and two Wolbachia genes. Both butterfly systems had uninfected and infected populations, and harboured several Wolbachia strains. Wolbachia was highly prevalent in A. artaxerxes and the host’s mitochondrial structure was shallow, in contrast to A. agestis. Similar bacterial alleles infected both Aricia species from nearby sites, pointing to a possible horizontal transfer. Mitochondrial history of the P. baton species complex mirrored its Wolbachia infection and not the taxonomical division. Pseudophilotes baton and P. vicrama formed a hybrid zone in Europe. Wolbachia could obscure mitochondrial history, but knowledge on the infection helps us to understand the observed patterns. Testing for Wolbachia should be routine in mitochondrial DNA studies.

scholarly journals Phylogeny and Biogeography of the Amazonian Pachyptera (Bignonieae, Bignoniaceae)

2020 ◽  
Vol 45 (2) ◽  
pp. 361-374
Author(s):  
Jessica Nayara Carvalho Francisco ◽  
Lúcia G. Lohmann
Keyword(s):  
Species Complex ◽  
Middle Eocene ◽  
Morphological Data ◽  
Species Limits ◽  
Test Species ◽  
Multispecies Coalescent ◽  
Biogeographic History ◽  
Coalescent Approach ◽  
History Of ◽  
Migration Pathways

Abstract—The Amazon houses a large proportion of the overall biodiversity currently found on Earth. Despite that, our knowledge of Amazonian biodiversity is still limited. In this study, we reconstruct the phylogeny of Pachyptera (Bignoniaceae), a genus of neotropical lianas that is centered in the Amazon. We then use this phylogenetic framework to re-evaluate species limits and study the biogeographic history of the genus. We sampled three molecular markers (i.e. ndhF, rpl32-trnL, and PepC) and 51 individuals representing the breadth of morphological variation and geographic distribution of all species recognized in the genus. We used this information to reconstruct phylogenetic relationships among individuals of Pachyptera using Bayesian and maximum likelihood approaches. The resulting molecular phylogeny was used as a basis to test species limits within the P. kerere species complex using a cpDNA coalescent approach (GMYC). GMYC identified five potential species within the P. kerere species complex that were subsequently evaluated in the light of morphology. Morphological data supported the recognition of four of the five potential species suggested by GMYC, all of which were also supported by a multispecies coalescent model in a Bayesian framework. The phylogeny of Pachyptera was time-calibrated and used to reconstruct the biogeographical history of the genus. We identified historically important migration pathways using our comprehensive cpDNA dataset and a Bayesian stochastic search variable selection (BSSVS) framework. Our results indicate that the genus originated in lowland Amazonia during the Middle Eocene, and subsequently occupied Central America and the Andes. Most of the diversification of Pachyptera occurred in the Miocene, a period of intense perturbations in South America.

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