A multi-locus phylogeny suggests an ancient hybridization event between Campephilus and melanerpine woodpeckers (Aves: Picidae)

2013 ◽  
Vol 67 (3) ◽  
pp. 578-588 ◽  
Author(s):  
Jérôme Fuchs ◽  
Jean-Marc Pons ◽  
Liang Liu ◽  
Per G.P. Ericson ◽  
Arnaud Couloux ◽  
...  
2019 ◽  
Vol 44 (4) ◽  
pp. 930-942
Author(s):  
Geraldine A. Allen ◽  
Luc Brouillet ◽  
John C. Semple ◽  
Heidi J. Guest ◽  
Robert Underhill

Abstract—Doellingeria and Eucephalus form the earliest-diverging clade of the North American Astereae lineage. Phylogenetic analyses of both nuclear and plastid sequence data show that the Doellingeria-Eucephalus clade consists of two main subclades that differ from current circumscriptions of the two genera. Doellingeria is the sister group to E. elegans, and the Doellingeria + E. elegans subclade in turn is sister to the subclade containing all remaining species of Eucephalus. In the plastid phylogeny, the two subclades are deeply divergent, a pattern that is consistent with an ancient hybridization event involving ancestral species of the Doellingeria-Eucephalus clade and an ancestral taxon of a related North American or South American group. Divergence of the two Doellingeria-Eucephalus subclades may have occurred in association with northward migration from South American ancestors. We combine these two genera under the older of the two names, Doellingeria, and propose 12 new combinations (10 species and two varieties) for all species of Eucephalus.


2019 ◽  
Vol 5 (5) ◽  
pp. eaav9188 ◽  
Author(s):  
Sylvain Glémin ◽  
Celine Scornavacca ◽  
Jacques Dainat ◽  
Concetta Burgarella ◽  
Véronique Viader ◽  
...  

Cultivated wheats are derived from an intricate history of three genomes, A, B, and D, present in both diploid and polyploid species. It was recently proposed that the D genome originated from an ancient hybridization between the A and B lineages. However, this result has been questioned, and a robust phylogeny of wheat relatives is still lacking. Using transcriptome data from all diploid species and a new methodological approach, our comprehensive phylogenomic analysis revealed that more than half of the species descend from an ancient hybridization event but with a more complex scenario involving a different parent than previously thought—Aegilops mutica, an overlooked wild species—instead of the B genome. We also detected other extensive gene flow events that could explain long-standing controversies in the classification of wheat relatives.


2018 ◽  
Author(s):  
Michael R. McKain ◽  
Matt C. Estep ◽  
Rémy Pasquet ◽  
Daniel J. Layton ◽  
Dilys M. Vela Díaz ◽  
...  

AbstractMaize (Zea mays ssp. mays) is not only one of the world’s most important crops, but it also is a powerful tool for studies of genetics, genomics, and cytology. The genome of maize shows the unmistakable signature of an ancient hybridization event followed by whole genome duplication (allopolyploidy), but the parents of this event have been a mystery for over a century, since studies of maize cytogenetics began. Here we show that the whole genome duplication event preceded the divergence of the entire genus Zea and its sister genus Tripsacum. One genome was donated, in whole or in part, by a plant related to the modern African genera Urelytrum and Vossia, although genomic rearrangement has been extensive. The other genome donor is less well-supported, but may have been related to the modern Rottboellia-Hemarthria clade, which is also African. Thus Zea and Tripsacum together represent a New World radiation derived from African ancestors.


2021 ◽  
Author(s):  
Christina N. Hodson ◽  
Kamil S. Jaron ◽  
Susan Gerbi ◽  
Laura Ross

AbstractGermline restricted DNA has evolved in diverse animal taxa, and is found in several vertebrate clades, nematodes, and flies. In these lineages, either portions of chromosomes or entire chromosomes are eliminated from somatic cells early in development, restricting portions of the genome to the germline. Little is known about why germline restricted DNA has evolved, especially in flies, in which three diverse families, Chironomidae, Cecidomyiidae, and Sciaridae exhibit germline restricted chromosomes (GRCs). We conducted a genomic analysis of germline restricted chromosomes in the fungus gnat Bradysia (Sciara) coprophila (Diptera: Sciaridae), which carries two large germline restricted “L” chromosomes. We sequenced and assembled the genome of B. coprophila, and used differences in sequence coverage and k-mer frequency between somatic and germ tissues to identify GRC sequence and compare it to the other chromosomes in the genome. We found that the GRCs in B. coprophila are large, gene-rich, and have many genes with paralogs on other chromosomes in the genome. We also found that the GRC genes are extraordinarily divergent from their paralogs, and have sequence similarity to another Dipteran family (Cecidomyiidae) in phylogenetic analyses, suggesting that these chromosomes have arisen in Sciaridae through introgression from a related lineage. These results suggest that the GRCs may have evolved through an ancient hybridization event, raising questions about how this may have occurred, how these chromosomes became restricted to the germline after introgression, and why they were retained over time.


2018 ◽  
Vol 14 (11) ◽  
pp. 20180557 ◽  
Author(s):  
David P. L. Toews ◽  
Henry M. Streby ◽  
Lowell Burket ◽  
Scott A. Taylor

Hybridization between divergent taxa can provide insight into the breakdown of characters used in mate choice, as well as reproductive compatibility across deep evolutionary timescales. Hybridization can also occur more frequently in declining populations, as there is a smaller pool of conspecific mates from which to choose. Here, we report an unusual combination of factors that has resulted in a rare, three-species hybridization event among two genera of warblers, one of which is experiencing significant population declines. We use bioacoustic, morphometric and genetic data, to demonstrate that an early generation female hybrid between a golden-winged warbler ( Vermivora chrysoptera ) and a blue-winged warbler ( V. cyanoptera ) went on to mate and successfully reproduce with a chestnut-sided warbler ( Setophaga pensylvanica ) . We studied the product of this event—a putative chrysoptera × cyanoptera × pensylvanica hybrid—and show that this male offspring sang songs like S. pensylvanica , but had morphometric traits similar to Vermivora warblers. The hybrid's maternal parent had V. chrysoptera mitochondrial DNA and , with six plumage-associated loci, we predicted the maternal parent's phenotype to show that it was likely an early generation Vermivora hybrid . That this hybridization event occurred within a population of Vermivora warblers in significant decline suggests that females may be making the best of a bad situation, and that wood-warblers in general have remained genetically compatible long after they evolved major phenotypic differences.


2021 ◽  
Author(s):  
Caoimhe E. O'Brien ◽  
Bing Zhai ◽  
Mihaela Ola ◽  
Eoin Ó Cinnéide ◽  
Ísla O'Connor ◽  
...  

Candida metapsilosis is a member of the C. parapsilosis species complex, a group of opportunistic human pathogens. Of all the members of this complex, C. metapsilosis is the least virulent, and accounts for a small proportion of invasive Candida infections. Previous studies established that all C. metapsilosis isolates are hybrids, originating from a single hybridization event between two lineages, parent A and parent B. Here, we use MinION and Illumina sequencing to characterize a C. metapsilosis isolate that originated from a separate hybridization. One of the parents of the new isolate is very closely related to parent A. However, the other parent (parent C) is not the same as parent B. Unlike C. metapsilosis AB isolates, the C. metapsilosis AC isolate has not undergone introgression at the Mating Type-like Locus. In addition, the A and C haplotypes are not fully collinear. The C. metapsilosis AC isolate has undergone Loss of Heterozygosity (LOH) with a preference for haplotype A, indicating that this isolate is in the early stages of genome stabilization.


Lankesteriana ◽  
2015 ◽  
Vol 15 (3) ◽  
Author(s):  
Ernesto Mújica ◽  
Elaine González ◽  
José L. Bocourt ◽  
Esther L. SantaCruz ◽  
J. M. Díaz

At Cabo San Antonio (Guanahacabibes Peninsula), Cuba in 2004, a single specimen of Broughtonia ortgiesiana (Rchb.f.) Dressler, and a related species, Broughtonia cubensis (Lindl.) Cogn., were both observed in flower simultaneously. In 2006, fruits were observed on B. ortgiesiana, and nine years later (2015) we noted five young plants in anthesis that displayed floral characteristics common to both species. Given the time frame and the blend of floral traits, we conclude that these five plants are the result of a natural hybridization event between the two Broughtonia species the details of which are described here.


2008 ◽  
Vol 17 (5) ◽  
pp. 1313-1327 ◽  
Author(s):  
JEFFREY M. GOOD ◽  
SARAH HIRD ◽  
NOAH REID ◽  
JOHN R. DEMBOSKI ◽  
SCOTT J. STEPPAN ◽  
...  

2011 ◽  
Vol 9 (2) ◽  
pp. 197-201 ◽  
Author(s):  
S. A. Angioi ◽  
D. Rau ◽  
L. Nanni ◽  
E. Bellucci ◽  
R. Papa ◽  
...  

Here, we present a brief overview of the main studies conducted on the common bean (Phaseolus vulgaris L.) in Europe and other countries outside its centres of origin. We focus on the proportions of the Andean and Mesoamerican gene pools, and on the inter-gene pool hybridization events. In Europe, for chloroplast microsatellites, 67% of European germplasm is of Andean origin. Within Europe, interesting trends have been seen; indeed, the majority of the Andean type is found in the three macro-areas of the Iberian Peninsula, Italy and central-northern Europe, while, in eastern and south-eastern Europe, the proportion of the Mesoamerican type increased. On a local scale, the contribution of the Mesoamerican type is always low. On other continents, various situations are seen using different markers: in China and Brazil, the Mesoamerican gene pool prevails, while in an African sample, overall, both gene pools are equally represented, with differences in individual countries. The frequency of European bean genotypes deriving from at least one hybridization event was 44% with an uneven distribution. Interestingly, hybrids tend to have intermediate seed size in comparison with ‘pure’ Andean or Mesoamerican types. On other continents, very few hybrids are found, probably because of the different marker systems used.


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