scholarly journals Two proteins homologous to the N- and C-terminal domains of the bacterial glycosyltransferase Murg are required for the second step of dolichyl-linked oligosaccharide synthesis in Saccharomyces cerevisiae. Vol. 280 (2005) 9236-9242

2005 ◽  
Vol 280 (18) ◽  
pp. 18551-18552
Author(s):  
Isabelle Chantret ◽  
Julia Dancourt ◽  
Alain Barbat ◽  
Stuart E.H. Moore
1993 ◽  
Vol 13 (5) ◽  
pp. 2959-2970
Author(s):  
D S Horowitz ◽  
J Abelson

The PRP18 gene, which had been identified in a screen for pre-mRNA splicing mutants in Saccharomyces cerevisiae, has been cloned and sequenced. Yeast strains bearing only a disrupted copy of PRP18 are temperature sensitive for growth; even at a low temperature, they grow extremely slowly and do not splice pre-mRNA efficiently. This unusual temperature sensitivity can be reproduced in vitro; extracts immunodepleted of PRP18 are temperature sensitive for the second step of splicing. The PRP18 protein has been overexpressed in active form in Escherichia coli and has been purified to near homogeneity. Antibodies directed against PRP18 precipitate the U4/U5/U6 small nuclear ribonucleoprotein particle (snRNP) from yeast extracts. From extracts depleted of the U6 small nuclear RNA (snRNA), the U4 and U5 snRNAs can be immunoprecipitated, while no snRNAs can be precipitated from extracts depleted of the U5 snRNA. PRP18 therefore appears to be primarily associated with the U5 snRNP. The antibodies against PRP18 inhibit the second step of pre-mRNA splicing in vitro. Together, these results imply that the U5 snRNP plays a role in the second step of splicing and suggest a model for the action of PRP18.


1993 ◽  
Vol 13 (5) ◽  
pp. 2959-2970 ◽  
Author(s):  
D S Horowitz ◽  
J Abelson

The PRP18 gene, which had been identified in a screen for pre-mRNA splicing mutants in Saccharomyces cerevisiae, has been cloned and sequenced. Yeast strains bearing only a disrupted copy of PRP18 are temperature sensitive for growth; even at a low temperature, they grow extremely slowly and do not splice pre-mRNA efficiently. This unusual temperature sensitivity can be reproduced in vitro; extracts immunodepleted of PRP18 are temperature sensitive for the second step of splicing. The PRP18 protein has been overexpressed in active form in Escherichia coli and has been purified to near homogeneity. Antibodies directed against PRP18 precipitate the U4/U5/U6 small nuclear ribonucleoprotein particle (snRNP) from yeast extracts. From extracts depleted of the U6 small nuclear RNA (snRNA), the U4 and U5 snRNAs can be immunoprecipitated, while no snRNAs can be precipitated from extracts depleted of the U5 snRNA. PRP18 therefore appears to be primarily associated with the U5 snRNP. The antibodies against PRP18 inhibit the second step of pre-mRNA splicing in vitro. Together, these results imply that the U5 snRNP plays a role in the second step of splicing and suggest a model for the action of PRP18.


2011 ◽  
Vol 77 (17) ◽  
pp. 6148-6157 ◽  
Author(s):  
Álvaro Lafraya ◽  
Julia Sanz-Aparicio ◽  
Julio Polaina ◽  
Julia Marín-Navarro

ABSTRACTEfficient enzymatic synthesis of tailor-made prebiotic fructo-oligosaccharides (FOS) used in functional food formulation is a relevant biotechnological objective. We have engineered theSaccharomyces cerevisiaeinvertase (Suc2) to improve its transferase activity and to identify the enzymatic determinants for product specificity. Amino acid replacement (W19Y, N21S, N24S) within a conserved motif (β-fructosidase) specifically increased the synthesis of 6-kestose up to 10-fold. Mutants with lower substrate (sucrose) affinity produced FOS with longer half-lives. A mutation (P205V) adjacent to another conserved motif (EC) caused a 6-fold increment in 6-kestose yield. Docking studies with a Suc2 modeled structure defined a putative acceptor substrate binding subsite constituted by Trp 291 and Asn 228. Mutagenesis studies confirmed the implication of Asn 228 in directing the orientation of the sucrose molecule for the specific synthesis of β(2,6) linkages.


1994 ◽  
Vol 107 (6) ◽  
pp. 1671-1678 ◽  
Author(s):  
G. Yu ◽  
J. Swiston ◽  
D. Young

We previously reported the identification of human CAP, a protein that is related to the Saccharomyces cerevisiae and Schizosaccharomyces pombe adenylyl cyclase-associated CAP proteins. The two yeast CAP proteins have similar functions: the N-terminal domains are required for the normal function of adenylyl cyclase, while loss of the C-terminal domains result in morphological and nutritional defects that are unrelated to the cAMP pathways. We have amplified and cloned cDNAs from a human glioblastoma library that encode a second CAP-related protein, CAP2. The human CAP and CAP2 proteins are 64% identical. Expression of either human CAP or CAP2 in S. cerevisiae cap- strains suppresses phenotypes associated with deletion of the C-terminal domain of CAP, but does not restore hyper-activation of adenylyl cyclase by RAS2val19. Similarly, expression of either human CAP or CAP2 in S. pombe cap- strains suppresses the morphological and temperature-sensitive phenotypes associated with deletion of the C-terminal domain of CAP in this yeast. In addition, expression of human CAP, but not CAP2, suppresses the propensity to sporulate due to deletion of the N-terminal domain of CAP in S. pombe. This latter observation suggests that human CAP restores normal adenylyl cyclase activity in S. pombe cap- cells. Thus, functional properties of both N-terminal and C-terminal domains are conserved between the human and S. pombe CAP proteins.


EKUILIBIUM ◽  
2013 ◽  
Vol 12 (1) ◽  
Author(s):  
Margono Margono

<p>Abstract: The policy of Indonesian Government on supporting renewable energy resources<br />developments has increased bioethanol research, both upstream or downstream processes. The<br />objective of this research was to improve bioethanol productivity using immobilized<br />Saccharomyces cerevisiaeFNCC 3012 on sugarcane baggase surfaces. Fermentation process<br />was devided into 2 steps, first was growth stepof developing biofilm and second step was<br />production process of bioethanol. Biofilm development was done for 72 hours by aerobic<br />fermentation and followed by anaerobic fermentation producing bioethanol for 72 hours. Some<br />volumetric flows of medium was implemented on the process, i.e. 1.44, 3.36 and 4.56 L/hr. The<br />best concumption of glucose in this research was showed by 20 g/L glucose in input and 0.15 g/L<br />glucose in the output medium. The increasing flowrate of medium into bioreactor results on<br />decreasing of bioethanol concentration in output of the bioreactor. The optimum medium flowrate<br />was 1.44 L/hrwhich was producing bioethanol concentration of 8.75% v/v.<br />Keywords: bioethanol, sugarcane baggase, biofilm, Saccharomyces cerevisiae FNCC 3012</p>


1999 ◽  
Vol 34 (4) ◽  
pp. 701-713 ◽  
Author(s):  
Thomas Scheibel ◽  
Tina Weikl ◽  
Ronald Rimerman ◽  
David Smith ◽  
Susan Lindquist ◽  
...  

2020 ◽  
Vol 92 (7) ◽  
pp. 1047-1056
Author(s):  
Ekaterina D. Kazakova ◽  
Dmitry V. Yashunsky ◽  
Elena A. Khatuntseva ◽  
Nikolay E. Nifantiev

Abstract2-Amino-2-deoxy-pyranosyl units are important structural components of cell-wall polymers in prokaryotes, fungi and mammals. With respect to the need for development of novel and efficient vaccines and tools for serodiagnosis of infectious diseases, of particular interest are the oligosaccharide cell-wall antigens of pathogenic bacteria and fungi, which comprise 2-amino-2-deoxy-D-glucopyranose and 2-amino-2-deoxy-D-galactopyranose units as α- or β-anomers. Synthesis of N-acylated α-GlcN and α-GalN containing oligosaccharides is a special challenge due to the presence of a participating group at C2 which favors the formation of β- rather than α-glycoside bond. Herein we overview the efficient two-step approach for preparation of 1,2-cis-glycosides of 2-amino-2-deoxy-D-glucopyranose and 2-amino-2-deoxy-D-galactopyranose, which was recently developed in our laboratory. In the first step, an efficient and straightforward azidophenylselenylation procedure of glycals gives phenyl 2-azido-2-deoxy-1-selenoglycosides as versatile glycosyl donors. In the second step, these donors can be efficiently transformed into α- or β-glycosides depending on the choice of the solvent. In acetonitrile, total β-stereocontrol was achieved, and the use of diethyl ether as a solvent favouring α-stereoselectivity of glycosylations with phenyl 2-azido-2-deoxy-1-selenoglycosides. Besides, it was shown, that low reactivity and nucleophilicity of glycosyl acceptors which are glycosylated with phenyl 2-azido-2-deoxy-1-selenogalactosides facilitated the formation of α-GalN derivatives. To date, homogenous azidophenylselenylation of glycals and glycosylation with phenyl 2-azido-2-deoxy-1-seleno-α-D-glycopyranosides can be regarded as most useful tool for introduction of 2-amino-2-deoxy-D-glycopyranoside residues into complex synthetic oligosaccharides.


Author(s):  
David Aparicio Alarcon ◽  
Munmun Nandi ◽  
Xavi Carpena ◽  
Ignacio Fita ◽  
Peter C. Loewen

The interconversion of glycerol 3-phosphate and dihydroxyacetone phosphate by glycerol-3-phosphate dehydrogenases provides a link between carbohydrate and lipid metabolism and providesSaccharomyces cerevisiaewith protection against osmotic and anoxic stress. The first structure of a glycerol-3-phosphate dehydrogenase fromS. cerevisiae, GPD1, is reported at 2.45 Å resolution. The asymmetric unit contains two monomers, each of which is organized with N- and C-terminal domains. The N-terminal domain contains a classic Rossmann fold with the (β-α-β-α-β)2motif typical of many NAD+-dependent enzymes, while the C-terminal domain is mainly α-helical. Structural and phylogenetic comparisons reveal four main structure types among the five families of glycerol-3-phosphate and glycerol-1-phosphate dehydrogenases and reveal that theClostridium acetobutylicanprotein with PDB code 3ce9 is a glycerol-1-phosphate dehydrogenase.


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