On the effect of ionic strength on the melting temperature of DNA

1963 ◽  
Vol 7 (3) ◽  
pp. 309-311 ◽  
Author(s):  
Leonard Kotin
1974 ◽  
Vol 29 (3-4) ◽  
pp. 130-132
Author(s):  
Gokul Chandra Das

Abstract The thermal denaturation of the native DNA in solvents of varying salt concentrations was studied by viscometric and spectrophotometric methods. It was observed that within the molarity range of 0.02 ᴍ to 0.3 ᴍ, the melting temperatures obtained by the two independent methods agreed well, but that at lower ionic strength the agreement was not satisfactory. Both the visco­metric and the spectrophotometric measurements showed an increase of the melting temperature with increasing counterion concentration and a levelling off effect in the neighbourhood of 0.3 ᴍ.


1974 ◽  
Vol 29 (3-4) ◽  
pp. 133-135 ◽  
Author(s):  
G. C. Das ◽  
N. N. Das

Abstract The binding of proflavine to native DNA increased its stability against thermal denaturation as measured by viscometric method. Up to a moderate ionic strength of 0.058 ᴍ, the melting temperature of the complex increased almost linearly with the increase of dye concentrations and a saturation was reached when one proflavine molecule was added per four to five DNA-Phosphates (D/P≅0.2). The extent of stabilization (ΔTm) produced by dye binding decreased gradually with the increase of ionic strength and no stabilization effect was observed at an ionic strength of about 0.3 ᴍ. The maximum melting temperature attained by Proflavine binding was almost independent of the ionic strength of the medium. The same maximum value was reached as obtained simply by increasing the sodium ion concentration.


2017 ◽  
Vol 12 (03) ◽  
pp. 141-149
Author(s):  
Yuri S. Babayan ◽  
Sergey N. Hakobyan ◽  
Rusanna S. Ghazaryan ◽  
Mariam A. Shahinyan

Thermostability of DNA complexes with anti-tumorous compound — mitoxantrone — at 0.011[Formula: see text]M and 0.11 M NaCl ionic strengths of solution by spectrophotometric and microcalorimetric methods has been studied. It was shown that at small fillings when one molecule of mitoxantrone corresponds to 250 or more base pairs of DNA, the thermostability of complexes strongly depends on the solution’s ionic strength; moreover, at an ionic strength of 0.011 M NaCl the melting temperature dependence on mitoxantrone concentration passes through a minimum. In the mentioned region of mitoxantrone concentration the melting enthalpy of the complexes increases linearly with mitoxantrone concentration enhancement. The observed phenomenon, which is not observed for ethidium bromide complexes with DNA, is qualitatively explained by the increasing of coil-shaped state of DNA–mitoxantrone complex due to additional freedom of rotation of mitoxantrone side groups.


2010 ◽  
Vol 3 (2) ◽  
pp. 61-75
Author(s):  
Aleksandr A. Lomzov ◽  
Dmitriy V. Pyshnyi

A new model describing the influence of ionic strength on thermal stability of DNA comlexes of oligonucleotides is proposed. This model assumes that binding of cations with DNA polyanions influences solely the entropy of hybridization and has a saturating mode. The efficacy of counterion binding with single- and double-stranded DNA is different, and the number of cations which bind additionally with the oligonucleotide at duplex formation depends on bulk cation concentration. Analytical equations describing the influence of cation concentration on melting temperature of DNA-duplexes as function of the length of oligonucleotide, its GC-composition and presence of the modification (non-nucleotide insert) were obtained. The values of melting temperature (Tm ) and thermodynamic parameters ( o ∆H , o ∆S ) characterizing the hybridization of both native and «bridged» oligonucleotides (bearing non-nucleotide insert on the basis of diethylene glycol phosphodiester) with DNA in various concentrations of NaCl (0,01÷1 М) were obtained using the UV-melting technique. Based on both the data obtained and presented in literature the database (695 data sets) characterizing the influence of ionic strength on the thermal stability of oligonucleotide complexes of various structure is developed. The database analysis allows us to obtain the values of the equilibrium binding constants for condensation of caions on DNA and the number of ions required for saturation of a discrete binding site. The proposed enhanced model of cation condensation utilizing unified thermodynamic increments of dsDNA formation allows us to calculate melting temperatures of DNAduplexes in the wide range of ionic strength ([Na+] = 0,01÷1 М) with high accuracy.


1966 ◽  
Vol 12 (2) ◽  
pp. 260-265 ◽  
Author(s):  
A.D. Macgillivray ◽  
A.I. McMullen

Author(s):  
F. Thoma ◽  
TH. Koller

Under a variety of electron microscope specimen preparation techniques different forms of chromatin appearance can be distinguished: beads-on-a-string, a 100 Å nucleofilament, a 250 Å fiber and a compact 300 to 500 Å fiber.Using a standardized specimen preparation technique we wanted to find out whether there is any relation between these different forms of chromatin or not. We show that with increasing ionic strength a chromatin fiber consisting of a row of nucleo- somes progressively folds up into a solenoid-like structure with a diameter of about 300 Å.For the preparation of chromatin for electron microscopy the avoidance of stretching artifacts during adsorption to the carbon supports is of utmost importance. The samples are fixed with 0.1% glutaraldehyde at 4°C for at least 12 hrs. The material was usually examined between 24 and 48 hrs after the onset of fixation.


Author(s):  
J.S. Wall ◽  
V. Maridiyan ◽  
S. Tumminia ◽  
J. Hairifeld ◽  
M. Boublik

The high contrast in the dark-field mode of dedicated STEM, specimen deposition by the wet film technique and low radiation dose (1 e/Å2) at -160°C make it possible to obtain high resolution images of unstained freeze-dried macromolecules with minimal structural distortion. Since the image intensity is directly related to the local projected mass of the specimen it became feasible to determine the molecular mass and mass distribution within individual macromolecules and from these data to calculate the linear density (M/L) and the radii of gyration.2 This parameter (RQ), reflecting the three-dimensional structure of the macromolecular particles in solution, has been applied to monitor the conformational transitions in E. coli 16S and 23S ribosomal RNAs in solutions of various ionic strength.In spite of the differences in mass (550 kD and 1050 kD, respectively), both 16S and 23S RNA appear equally sensitive to changes in buffer conditions. In deionized water or conditions of extremely low ionic strength both appear as filamentous structures (Fig. la and 2a, respectively) possessing a major backbone with protruding branches which are more frequent and more complex in 23S RNA (Fig. 2a).


Author(s):  
S. Trachtenberg ◽  
D. J. DeRosier

The bacterial cell is propelled through the liquid environment by means of one or more rotating flagella. The bacterial flagellum is composed of a basal body (rotary motor), hook (universal coupler), and filament (propellor). The filament is a rigid helical assembly of only one protein species — flagellin. The filament can adopt different morphologies and change, reversibly, its helical parameters (pitch and hand) as a function of mechanical stress and chemical changes (pH, ionic strength) in the environment.


1988 ◽  
Vol 85 ◽  
pp. 523-527
Author(s):  
M.M. Zuleika ◽  
Palhares SILVA ◽  
Ernesto Rafael GONZALEZ ◽  
Luis Alberto AVACA ◽  
Artur de Jesus MOTHEO

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