Evolution in large populations. I. Natural selection and adaptation

Author(s):  
Richard Frankham ◽  
Jonathan D. Ballou ◽  
Katherine Ralls ◽  
Mark D. B. Eldridge ◽  
Michele R. Dudash ◽  
...  

Crosses between populations within species sometimes result in reduced fitness, especially in F2 and later generations (outbreeding depression). The primary mechanisms causing outbreeding depression in crosses between populations are fixed chromosomal differences and adaptive genetic differences, especially for long-isolated populations. Outbreeding depression is usually observed after crossing populations with ploidy differences or fixed differences for translocations, inversions or centric fusions: the magnitudes are usually ploidy > translocations and monobrachial centric fusions > inversions and simple centric fusions. Populations adapted to different environments (but with the same karyotype) often exhibit outbreeding depression when crossed, especially in the F2 and later generations. Even if outbreeding depression occurs, it is often only temporary, as natural selection acts to remove it, especially in large populations.


1966 ◽  
Vol 8 (2) ◽  
pp. 205-218 ◽  
Author(s):  
B. D. H. Latter

This paper is concerned with three related aspects of the behaviour of populations under artificial selection for increased scutellar bristle number: (i) the pattern of response on the probit scale; (ii) the homeostatic behaviour of the selection lines on relaxation of artificial selection; and (iii) correlated responses in generation interval, reproductive capacity and competitive ability. The study was designed so that linkage would be a comparatively unimportant factor in promoting correlated responses to selection, and the effects of genetic sampling from generation to generation were also reduced to a low level.Progress from the base mean of 4·05 bristles in females to a level of almost 8 bristles has been shown to involve two distinct phases with realized heritabilities of 0·34 and 0·10 respectively, the zone of transition corresponding closely to the position of the 6/7 threshold on the underlying scale. In addition to an apparent average reduction of about 25% in the additive genetic standard deviation in phase II by comparison with phase I, the loss in response due to the opposition of natural selection has been shown to reach a maximum near the zone of separation of the two phases.The pattern of behaviour of the populations under artificial and natural selection has suggested the presence in the base population of genes of large effect on both bristle number and reproductive fitness. There is also evidence of additional genetic variation in bristle number which is effectively neutral with respect to fitness. Continued selection for increased scutellar bristle number in large populations has been shown to reduce mean competitive ability by more than 80%.


2020 ◽  
Author(s):  
Loïc Marrec ◽  
Irene Lamberti ◽  
Anne-Florence Bitbol

Microbial populations often have complex spatial structures, with homogeneous competition holding only at a local scale. Population structure can strongly impact evolution, in particular by affecting the fixation probability of mutants. Here, we propose a model of structured microbial populations on graphs, where each node of the graph contains a well-mixed deme whose size can fluctuate, and where migrations are independent from birth and death events. We study analytically and numerically the mutant fixation probabilities in different structures, in the rare migration regime. In particular, we demonstrate that the star graph continuously transitions between amplifying and suppressing natural selection as migration rate asymmetry is varied. This elucidates the apparent paradox in existing constant-size models on graphs, where the star is an amplifier or a suppressor depending on the details of the dynamics or update rule chosen, e.g. whether each birth event precedes or follows a death event. The celebrated amplification property of the star graph for large populations is preserved in our model, for specific migration asymmetry. We further demonstrate a general mapping between our model and constant-size models on graphs, under a constraint on migration rates, which directly stems from assuming constant size. By lifting this constraint, our model reconciles and generalizes previous results, showing that migration rate asymmetry is key to determining whether a given population structure amplifies or suppresses natural selection.


2013 ◽  
Vol 368 (1610) ◽  
pp. 20120080 ◽  
Author(s):  
Graham Bell

Populations subject to severe stress may be rescued by natural selection, but its operation is restricted by ecological and genetic constraints. The cost of natural selection expresses the limited capacity of a population to sustain the load of mortality or sterility required for effective selection. Genostasis expresses the lack of variation that prevents many populations from adapting to stress. While the role of relative fitness in adaptation is well understood, evolutionary rescue emphasizes the need to recognize explicitly the importance of absolute fitness. Permanent adaptation requires a range of genetic variation in absolute fitness that is broad enough to provide a few extreme types capable of sustained growth under a stress that would cause extinction if they were not present. This principle implies that population size is an important determinant of rescue. The overall number of individuals exposed to selection will be greater when the population declines gradually under a constant stress, or is progressively challenged by gradually increasing stress. In gradually deteriorating environments, survival at lethal stress may be procured by prior adaptation to sublethal stress through genetic correlation. Neither the standing genetic variation of small populations nor the mutation supply of large populations, however, may be sufficient to provide evolutionary rescue for most populations.


Author(s):  
Daniel L. Hartl

This chapter includes selection in haploid and diploid organisms, hard and soft selective sweeps, background selection, and the probability of ultimate survival of a new favorable mutation in a large population. It considers overdominance and heterozygote inferiority in detail as well as different types of equilibria and the fundamental theorem of natural selection. Various types of balancing selection are examined including mutation–selection balance, migration–selection balance, meiotic drive and gametic selection, and the theory of CRISPR-mediated gene drive to control natural populations. It closes with a discussion of other modes of selection and their implications.


Science ◽  
2017 ◽  
Vol 358 (6365) ◽  
pp. 951-954 ◽  
Author(s):  
Gemma G. R. Murray ◽  
André E. R. Soares ◽  
Ben J. Novak ◽  
Nathan K. Schaefer ◽  
James A. Cahill ◽  
...  

The extinct passenger pigeon was once the most abundant bird in North America, and possibly the world. Although theory predicts that large populations will be more genetically diverse, passenger pigeon genetic diversity was surprisingly low. To investigate this disconnect, we analyzed 41 mitochondrial and 4 nuclear genomes from passenger pigeons and 2 genomes from band-tailed pigeons, which are passenger pigeons’ closest living relatives. Passenger pigeons’ large population size appears to have allowed for faster adaptive evolution and removal of harmful mutations, driving a huge loss in their neutral genetic diversity. These results demonstrate the effect that selection can have on a vertebrate genome and contradict results that suggested that population instability contributed to this species’s surprisingly rapid extinction.


Author(s):  
Richard Frankham ◽  
Jonathan D. Ballou ◽  
David A. Briscoe

2017 ◽  
Author(s):  
Gemma G. R. Murray ◽  
André E. R. Soares ◽  
Ben J. Novak ◽  
Nathan K. Schaefer ◽  
James A. Cahill ◽  
...  

AbstractThe extinct passenger pigeon was once the most abundant bird in North America, and possibly the world. While theory predicts that large populations will be more genetically diverse and respond more efficiently to selection, passenger pigeon genetic diversity was surprisingly low. To investigate this we analysed 41 mitochondrial and 4 nuclear genomes from passenger pigeons, and 2 genomes from band-tailed pigeons, passenger pigeons’ closest living relatives. We find that passenger pigeons’ large population size allowed for faster adaptive evolution and removal of harmful mutations, but that this drove a huge loss in neutral genetic diversity. These results demonstrate how great an impact selection can have on a vertebrate genome, and invalidate previous results that suggested population instability contributed to this species’ surprisingly rapid extinction.


1969 ◽  
Vol 14 (3) ◽  
pp. 167-183 ◽  
Author(s):  
C. Cannings

A matrix notation is developed to facilitate study of natural selection in large populations. The processes of mating (taking into account differences between genotypes in fertility in both sexes), segregation, and differential viabilities are each expressed in matrix notation. Assortative mating and non-random segregation can also be described by the method. The separate processes can then be combined to give simple equations relating the genic and genotypic frequencies in one generation to those in the previous generation. This will facilitate computer treatment of natural selection processes.The method can also be used to study equilibria and the conditions of their stability by examining the latents roots of the matrix. Several special cases of selection at an autosomal locus are examined. The method can be extended to sex-linked loci and two special cases are discussed.


Author(s):  
Ray Keller

The amphibian embryo offers advantages of size, availability, and ease of use with both microsurgical and molecular methods in the analysis of fundamental developmental and cell biological problems. However, conventional wisdom holds that the opacity of this embryo limits the use of methods in optical microscopy to resolve the cell motility underlying the major shape-generating processes in early development.These difficulties have been circumvented by refining and adapting several methods. First, methods of explanting and culturing tissues were developed that expose the deep, nonepithelial cells, as well as the superficial epithelial cells, to the view of the microscope. Second, low angle epi-illumination with video image processing and recording was used to follow patterns of cell movement in large populations of cells. Lastly, cells were labeled with vital, fluorescent dyes, and their behavior recorded, using low-light, fluorescence microscopy and image processing. Using these methods, the details of the cellular protrusive activity that drives the powerful convergence (narrowing)


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