Investigation of the genetic diversity of an invasive whitefly (Bemisia tabaci) in China using both mitochondrial and nuclear DNA markers

2011 ◽  
Vol 101 (4) ◽  
pp. 467-475 ◽  
Author(s):  
D. Chu ◽  
C.S. Gao ◽  
P. De Barro ◽  
F.H. Wan ◽  
Y.J. Zhang

AbstractIt is often considered that reduced genetic variation due to bottlenecks and founder effects limits the capacity for species to establish in new environments and subsequently spread. The recent invasion (during the past five years) of an alien whitefly, one member of Bemisia tabaci cryptic species complex, referred to as Mediterranean (herein referred to as Q-type) in Shandong Province, China, provides an ideal opportunity to study the changes in genetic variation between its home range in the Mediterranean region and its invasion range. Using both the mitochondrial cytochrome oxidase I (mtCOI) and nuclear (microsatellite) DNA, we show that Q in Shandong likely originated in the western Mediterranean. We also found that the haplotype diversity was low compared with its presumed geographic origin, whereas microsatellite allele diversity showed no such decline. A key factor in invasions is the establishment of females and so bottleneck and founder events can lead to a very rapid and considerable loss of mitochondrial diversity. The lack of haplotype diversity in Shandong supports the interpretation that, at one or more points between the western Mediterranean and China, the invading Q lost haplotype diversity, most probably through the serial process of establishment and redistribution through trade in ornamental plants. However, the loss in haplotype diversity does not necessarily mean that nuclear allelic diversity should also decline. Provided females can mate freely with whichever males are available, allelic diversity can be maintained or even increased relative to the origin of the invader. Our findings may offer some explanation to the apparent paradox between the concept of reduced genetic variation limiting adaptation to new environments and the observed low diversity in successful invaders.

Author(s):  
Maha Moussa ◽  
Sarra Choulak ◽  
Soumaya Rhouma-Chatti ◽  
Noureddine Chatti ◽  
Khaled Said

The cytochrome oxidase subunit I (COI) gene was amplified and analyzed for 70 Mediterranean Chondrosia reniformis, collected from eight localities in Tunisia. Polymorphism results revealed high values of haplotype diversity (Hd) and very low nucleotide diversity (π). Thus, these results suggest that our sponge populations of C. reniformis may have undergone a bottleneck followed by rapid demographic expansion. This suggestion is strongly confirmed by the results of neutrality tests and “mismatch distribution”. The important number of haplotypes between localities and the high genetic differentiation (Fst ranged from 0.590 to 0.788) of the current C. reniformis populations could be maintained by the limited gene flow Nm (0.10 - 0.18). Both haplotype Network and the biogeographic analysis showed a structured distribution according to the geographic origin. C. reniformis populations are subdivided into two major clades: Western and Eastern Mediterranean. This pattern seems to be associated with the well-known discontinuous biogeographic area: the Siculo-Tunisian Strait, which separates two water bodies circulating with different hydrological, physical, and chemical characteristics. The short dispersal of pelagic larvae of C. reniformis and the marine bio-geographic barrier created high differentiation among populations. Additionally, it is noteworthy to mention that the “Mahres / Kerkennah” group diverged from Eastern groups in a single sub-clade. This result was expected, the region Mahres / Kerkennah, presented a particular marine environment.


2000 ◽  
Vol 132 (4) ◽  
pp. 519-527 ◽  
Author(s):  
Stefano Demichelis ◽  
Domenico Bosco ◽  
Aulo Manino ◽  
Daniele Marian ◽  
Piero Caciagli

AbstractEsterase banding patterns in native polyacrylamide gel electrophoresis, squash silver leaf (SSL) induction, and tomato yellow leaf curl begomovirus-Sardinia (TYLCV-Sar) transmission capability were investigated to evaluate variations among populations of Bemisia tabaci (Gennadius) from Italy and to relate their distribution to their geographic origin. Adults of the B biotype, adults of the Q-like biotype (which is similar to a Spanish biotype), and adults without esterase bands were found. The B biotype has been found in Italy since 1989. Two populations, including mainly B and Q-like biotypes, showed similar TYLCV-Sar transmission efficiency, independent of esterase banding pattern. Only populations from Liguria and Sardinia, which contained almost exclusively B-biotype individuals, were able to induce SSL. We observed that adults of the B biotype are widespread in greenhouses of northern Italy and Sardinia, whereas those of the Q-like biotype are present only in fields of southern Italy. These results suggest that the B biotype of B. tabaci was introduced into Italy likely while trading ornamental plants, whereas the Q-like biotype is native to the Mediterranean region.


Plant Disease ◽  
2004 ◽  
Vol 88 (4) ◽  
pp. 402-406 ◽  
Author(s):  
B. J. Horvath ◽  
J. M. Vargas

Anthracnose basal rot (ABR) is a serious disease of turfgrasses that is caused by the pathogen Colletotrichum graminicola. The relationships of isolates causing ABR on turfgrasses to those causing disease on important crop hosts (maize, sorghum) remain unresolved. Genetic variation among isolates from annual bluegrass, creeping bentgrass, maize, and sorghum was evaluated based on host origin and geographic origin. Isozymes were used to estimate the genetic variation of the isolates. Five enzyme systems comprising 16 alleles from 5 loci were used. Allele frequencies, genetic distance, and linkage disequilibrium values were calculated for isolates based on both host and geographic origin. Isolates from creeping bentgrass and annual bluegrass were the most closely related based on Nei's genetic distance, while isolates from maize and sorghum were the most distantly related, consistent with their known species-level relationship. Isolates from annual bluegrass and creeping bentgrass had different genetic distances to isolates from both maize and sorghum. Annual bluegrass isolates from different geographic regions had the smallest genetic distance values observed in this study, indicating a very close relationship regardless of geographic origin. Based on these data, it appears that host origin, not geographic origin, plays a more important role in the genetic diversity of these fungi.


2008 ◽  
Vol 102 (2) ◽  
pp. 195-205 ◽  
Author(s):  
Li-Jiang Hu ◽  
Kentaro Uchiyama ◽  
Hai-Long Shen ◽  
Yoko Saito ◽  
Yoshiaki Tsuda ◽  
...  

2019 ◽  
Vol 109 (1) ◽  
pp. 145-154
Author(s):  
Sandra Catalina Chaves ◽  
María Camila Rodríguez ◽  
María Fernanda Mideros ◽  
Florencia Lucca ◽  
Carlos E. Ñústez ◽  
...  

Pathogen variation plays an important role in the dynamics of infectious diseases. In this study, the genetic variation of 279 Phytophthora infestans isolates was assessed using a combination of 12 microsatellite simple-sequence repeat markers. Isolates were collected from 11 different potato cultivars in 11 different geographic localities of the central region of Colombia. The objective of this study was to determine whether populations were differentiated by host genotype or geographic origin. Within a single clonal lineage, EC-1, 76 genotypes were detected. An analysis of molecular variance attributed most of the variation to differences within host genotypes rather than among the host genotypes, suggesting that host cultivars do not structure the populations of the pathogen. Furthermore, the lack of a genetic population structure according to the host cultivar was confirmed by all of the analyses, including the Bayesian clustering analysis and the minimum spanning network that used the Bruvo genetic distance, which suggested that there are no significant barriers to gene flow for P. infestans among potato cultivars. According to the geographic origin, the populations of P. infestans were also not structured, and most of the variation among the isolates was attributed to differences within localities. Only some but not all localities in the north and west of the central region of Colombia showed some genetic differentiation from the other regions. The absence of sexual reproduction of this pathogen in Colombia was also demonstrated. Important insights are discussed regarding the genetic population dynamics of the P. infestans populations of the central region of Colombia that were provided by the results. In Colombia, there is a high genetic variation within the EC-1 clonal lineage with closely related genotypes, none dominant, that coexist in a wide geographic area and on several potato cultivars.


2021 ◽  
Author(s):  
Anna A. Igolkina ◽  
Nina V. Noujdina ◽  
Maria G. Samsonova ◽  
Eric von Wettberg ◽  
Travis Longcore ◽  
...  

AbstractAccording to archaeological records, chickpea (Cicer arietinum) was first domesticated in the Fertile Crescent 10 thousand years ago. Its subsequent diversification in South Asia, Ethiopia, and the Western Mediterranean, however, remains obscure and cannot be resolved using only archeological and historical evidence. In particular, chickpea has two market types: ‘desi’, which has a similar flower and seed coat color to chickpea’s wild relatives; and ‘kabuli’, which has light-colored seed, and is linguistically tied to Central Asia but has an unknown geographic origin.Based on the genetic data from 421 chickpea landraces from six geographic regions, we tested complex historical hypotheses of chickpea migration and admixture on two levels: within and between major regions of cultivation. For the former, we developed popdisp, a Bayesian model of population dispersal from a regional center towards sample locations, and confirmed that chickpea spread within each region along trade routes rather than by simple diffusion.For the latter, migration between regions, we developed another model, migadmi, that evaluates multiple and nested admixture events. Applying this model to desi populations, we found both Indian and Middle Eastern traces in Ethiopian chickpea, suggesting presence of a seaway from South Asia to Ethiopia — and the cultural legacy of the Queen of Sheba. As for the origin of kabuli chickpeas, we found significant evidence for an origin from Turkey rather than Central Asia.


2018 ◽  
Vol 109 (5) ◽  
pp. 543-552 ◽  
Author(s):  
Camila L Chaves ◽  
Bernd Degen ◽  
Birte Pakull ◽  
Malte Mader ◽  
Euridice Honorio ◽  
...  

2017 ◽  
Vol 45 (4) ◽  
pp. 517-525 ◽  
Author(s):  
Letícia Aparecida de Moraes ◽  
Julio Massaharu Marubayashi ◽  
Valdir Atsushi Yuki ◽  
Murad Ghanim ◽  
Vinicius Henrique Bello ◽  
...  

Genome ◽  
2014 ◽  
Vol 57 (4) ◽  
pp. 239-244 ◽  
Author(s):  
Xifeng Ren ◽  
Yonggang Wang ◽  
Songxian Yan ◽  
Dongfa Sun ◽  
Genlou Sun

Spike morphology is a key characteristic in the study of barley genetics, breeding, and domestication. Variation at the six-rowed spike 1 (vrs1) locus is sufficient to control the development and fertility of the lateral spikelet of barley. To study the genetic variation of vrs1 in wild barley (Hordeum vulgare subsp. spontaneum) and cultivated barley (Hordeum vulgare subsp. vulgare), nucleotide sequences of vrs1 were examined in 84 wild barleys (including 10 six-rowed) and 20 cultivated barleys (including 10 six-rowed) from four populations. The length of the vrs1 sequence amplified was 1536 bp. A total of 40 haplotypes were identified in the four populations. The highest nucleotide diversity, haplotype diversity, and per-site nucleotide diversity were observed in the Southwest Asian wild barley population. The nucleotide diversity, number of haplotypes, haplotype diversity, and per-site nucleotide diversity in two-rowed barley were higher than those in six-rowed barley. The phylogenetic analysis of the vrs1 sequences partially separated the six-rowed and the two-rowed barley. The six-rowed barleys were divided into four groups.


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