Three-Dimensional Reconstruction Using Stereo Pairs from Serial Thick Sections

1977 ◽  
Vol 35 ◽  
pp. 562-563
Author(s):  
Robert Glaeser ◽  
Thomas Bauer ◽  
David Grano
Keyword(s):  
Three Dimensional ◽  
Dimensional Structure ◽  
Serial Sections ◽  
Thin Sections ◽  
3 Dimensional ◽  
Transmission Electron ◽  
Freeze Dried ◽  
Dimensional Reconstruction ◽  
Stereo Imagery ◽  
Whole Mounts

In transmission electron microscopy, the 3-dimensional structure of an object is usually obtained in one of two ways. For objects which can be included in one specimen, as for example with elements included in freeze- dried whole mounts and examined with a high voltage microscope, stereo pairs can be obtained which exhibit the 3-D structure of the element. For objects which can not be included in one specimen, the 3-D shape is obtained by reconstruction from serial sections. However, without stereo imagery, only detail which remains constant within the thickness of the section can be used in the reconstruction; consequently, the choice is between a low resolution reconstruction using a few thick sections and a better resolution reconstruction using many thin sections, generally a tedious chore. This paper describes an approach to 3-D reconstruction which uses stereo images of serial thick sections to reconstruct an object including detail which changes within the depth of an individual thick section.

Three dimensional structure of the leishmania amastigote as revealed by computer-aided reconstruction from serial sections

Parasitology ◽  
1986 ◽  
Vol 92 (1) ◽  
pp. 13-23 ◽  
Author(s):  
G. H. Coombs ◽  
L. Tetley ◽  
V. A. Moss ◽  
K. Vickerman
Keyword(s):  
Cell Volume ◽  
Three Dimensional ◽  
Spatial Arrangement ◽  
Dimensional Structure ◽  
Serial Sections ◽  
Leishmania Mexicana ◽  
Cell Organelles ◽  
3 Dimensional ◽  
Computer Aided ◽  
Total Cell Volume

SUMMARYComputer-aided reconstruction from serial sections has been used to analyse the 3-dimensional structure of entire amastigotes of Leishmania mexicana mexicana and to determine the number, arrangement and volume of each organelle. In two reconstructions, the lysosome-like ‘megasomes’ were the most numerous organelle, there being 34 in one amastigote, and they comprised as much as 15% of the total cell volume. In contrast, as few as 9 glycosomes were present, accounting for less than 1% of the cell volume. The unitary nature of the mitochondrion was confirmed and its complex basket-like structure was revealed. The spatial arrangement of the cell organelles is here displayed in stereo-pairs.

scholarly journals Three-dimensional reconstruction of the Z disk of sectioned bee flight muscle.

1989 ◽  
Vol 108 (5) ◽  
pp. 1761-1774 ◽  
Author(s):  
N Q Cheng ◽  
J F Deatherage
Keyword(s):  
Central Region ◽  
Actin Filaments ◽  
Flight Muscle ◽  
Three Dimensional ◽  
Opposite Polarity ◽  
Dimensional Structure ◽  
Three Dimensional Reconstruction ◽  
Thin Sections ◽  
Dimensional Reconstruction ◽  
Cross Links

The three-dimensional structure of the central region of the Z disk of honeybee flight muscle has been determined to a resolution of 70 A by three-dimensional reconstruction from electron micrographs of tilted thin sections. The reconstructions show a complex assembly in which actin filaments terminate and are cross-linked together; a number of structural domains of this network are resolved in quantitative three-dimensional detail. The central region of the Z disk contains two sets of overlapping actin filaments of opposite polarity, which originate in the sarcomeres adjacent to the Z disk, and connections between these filaments. The filaments are deflected by the attachment of cross-links; spacing between filaments change by greater than 100 A during their passage through the Z disk. Each actin filament is linked by connecting structures to four filaments of opposite polarity and two filaments are of the same polarity. Four types of connecting density domain are observed in association with pairs of filaments of opposite polarity: C1, C2, C3, and C5. Two of these, C3 and C5, are associated with the ends of actin filaments. Another connection, C4, is associated with three filaments of the same polarity; C4 is threefold symmetric.

scholarly journals Three-dimensional reconstruction of an actin bundle.

1988 ◽  
Vol 107 (2) ◽  
pp. 597-611 ◽  
Author(s):  
E S Bullitt ◽  
D J DeRosier ◽  
L M Coluccio ◽  
L G Tilney
Keyword(s):  
Electron Microscopy ◽  
Transmission Electron Microscopy ◽  
Three Dimensional ◽  
Oblate Spheroid ◽  
Potassium Thiocyanate ◽  
Dimensional Structure ◽  
Transmission Electron ◽  
Scanning Transmission ◽  
Dimensional Reconstruction ◽  
Molecular Masses

We present the three-dimensional structure of an actin filament bundle from the sperm of Limulus. The bundle is a motile structure which by changing its twist, converts from a coiled to an extended form. The bundle is composed of actin plus two auxiliary proteins of molecular masses 50 and 60 kD. Fraying the bundle with potassium thiocyanate created three classes of filaments: actin, actin plus the 60-kD protein, and actin plus both the auxiliary proteins. We examined these filaments by transmission electron microscopy and scanning transmission electron microscopy (STEM). Three-dimensional reconstructions from electron micrographs allowed us to visualize the actin subunit and the 60- and 50-kD subunits bound to it. The actin subunit appears to be bilobed with dimensions 70 X 40 X 35 A. The inner lobe of the actin subunit, located at 20 A radius, is a prolate ellipsoid, 50 X 25 A; the outer actin lobe, at 30 A radius, is a 35-A-diam spheroid. Attached to the inner lobe of actin is the 60-kD protein, an oblate spheroid, 55 X 40 A, at 50 A radius. The armlike 50-kD protein, at 55 A radius, links the 60-kD protein on one of actin's twin strands to the outer lobe of the actin subunit on the opposite strand. We speculate that the 60-kD protein may be a bundling protein and that the 50-kD protein may be responsible for the change in twist of the filaments which causes extension of the bundle.

Three-dimensional reconstruction of large subcellular structures: A method for combining axial tilt tomography with serial reconstruction of thick sections

1992 ◽  
Vol 50 (1) ◽  
pp. 904-905
Author(s):  
Gabriel E. Soto ◽  
Maryann E. Martone ◽  
Stephan Lamont ◽  
Bridget O. Carragher ◽  
Thomas J. Deerinck ◽  
...  
Keyword(s):  
Three Dimensional ◽  
Electron Microscopic Observation ◽  
Electron Microscopic ◽  
High Voltage Electron Microscopy ◽  
Thin Sections ◽  
3 Dimensional ◽  
Voltage Electron ◽  
Large Numbers ◽  
Dimensional Reconstruction ◽  
Axial Tilt

The study of subcellular structures requires the resolution afforded by the electron microscope. However, cellular organelle systems can extend for tens of microns and therefore cannot be encompassed in a single thin section required for conventional electron microscopic observation. Even with the use of high voltage electron microscopy, section thickness is limited to no more than a few microns. Visualization of 3-dimensional cellular structure in large volumes of tissue can be achieved by using 3-dimensional reconstructions based on serial sections. This approach is often tedious, requiring an extremely large series of thin sections in order to encompass the structure of interest. This method also suffers from technical difficulties in obtaining, processing and maintaining adequate registration over large numbers of sections. We have been exploring a method in which the number of sections is reduced by employing a series of thick sections in which the structures of interest are selectively stained. Three-dimensional information is extracted from each section using axial tilt tomography. The resulting serial volumes are then aligned and linked to form a single volume which is displayed using volume rendering techniques.

A three-dimensional reconstruction study of the rough ER-Golgi interface in serial thin sections of the pancreatic acinar cell of the rat

1994 ◽  
Vol 107 (3) ◽  
pp. 517-528 ◽  
Author(s):  
A. Sesso ◽  
F.P. de Faria ◽  
E.S. Iwamura ◽  
H. Correa
Keyword(s):  
Three Dimensional ◽  
Pancreatic Acinar Cell ◽  
The Other ◽  
Serial Sections ◽  
Thin Sections ◽  
Transport Vesicles ◽  
Dimensional Reconstruction ◽  
Rough Er ◽  
Convoluted Tubules ◽  
Electron Lucent

Distinctive views of the tubulo-vesicular elements interposed between the endoplasmic reticulum (ER) and the Golgi apparatus were obtained in thin sections. The tubules that protrude from the transitional rough ER (tRER) are of dissimilar length. The numbers of tubules and of the nearby omega- and pear-shaped profiles decrease after fasting and are partially restored by refeeding. This formation is designated herein as the budding chamber of the tRER. Close to the budding chamber, clusters of 56 nm diameter vesicles are consistently observed. In some of the cells, convoluted tubules appear enmeshed with the presumptive transport vesicles of 56 nm diameter and with irregular, vesicular formations. Apparently structureless, electron-lucent ellipsoidal areas are found adjacent to these membranous elements. Serial and semi-serial sections show that the budding chamber, the sinuous tubules, the irregular vesicles, the structureless regions and the 56 nm vesicles fill tunnel-like spaces limited by the outermost Golgi cisterna (OGC) on one side and by the tRER on the other. Curved tubules appear to link the lumen of the OGC with that of smooth membranous occupants of these tunnel-like spaces. A presumptive luminal connection between these membranous occupants and the tubules of the budding chamber can also be seen. The predominant configuration of the OGC is that of a perforated, flat saccule. However, OGC regions exhibiting progressively lower densities of fenestrae, including smooth surfaced sectors eventually accumulating an intraluminal content are seen. Two such dilated, saccular portions of the OGC were analyzed through reconstruction of serial sections. Bundles of microtubules run closely apposed to the cis side of the OGC.

Three-dimensional Structure of Twinned and Zigzagged One-dimensional Nanostructures Using Electron Tomography

2010 ◽  
Vol 1262 ◽  
Author(s):  
Han Sung Kim ◽  
Yoon Myung ◽  
Yong Jae Cho ◽  
Dong Myung Jang ◽  
Chan Soo Jung ◽  
...  
Keyword(s):  
Electron Tomography ◽  
3D Structure ◽  
Three Dimensional ◽  
Axial Direction ◽  
Zone Axis ◽  
Dimensional Structure ◽  
3 Dimensional ◽  
Superlattice Structure ◽  
Transmission Electron ◽  
Inas Nanowires

AbstractElectron tomography and high-resolution transmission electron microscopy were used to characterize the unique 3-dimensional (3D) structures of twinned Zn3P2 (tetragonal) and InAs (zinc blende) nanowires synthesized by the vapor transport method. The Zn3P2 nanowires adopt a unique superlattice structure that consists of twinned octahedral slice segments having alternating orientations along the axial [111] direction of a pseudocubic unit cell. The apices of the octahedral slice segment are indexed as six equivalent <112> directions at the [111] zone axis. At each 30 degrees turn, the straight and zigzagged morphologies appear repeatedly at the <112> and <011> zone axes, respectively. The 3D structure of the twinned Zn3P2 nanowires is virtually the same as that of the twinned InAs nanowires. In addition, we analyzed the 3D structure of zigzagged CdO (rock salt) nanowires and found that they include hexahedral segments, whose six apices are matched to the <011> directions, linked along the [111] axial direction. We also analyzed the unique 3D structure of rutile TiO2 (tetragonal) nanobelts; at each 90 degree turn, the straight morphology appears repeatedly, while the in-between twisted form appears at the [011] zone axis. We suggest that the TiO2 nanobelts consist of twinned octahedral slices whose six apices are indexed by the <011>/<001> directions with the axial [010] direction.

Electron Tomography of Corneal Collagen Fibrils

2001 ◽  
Vol 7 (S2) ◽  
pp. 110-111
Author(s):  
C. J. Gilpin ◽  
D.F. Holmes ◽  
U. Ziese ◽  
A.J. Koster ◽  
K.E. Kadler
Keyword(s):  
Electron Tomography ◽  
Three Dimensional ◽  
Collagen Fibrils ◽  
Dimensional Structure ◽  
3 Dimensional ◽  
Tomography System ◽  
Transmission Electron ◽  
Angular Increment ◽  
Parallel Arrays ◽  
Corneal Collagen

The ability of cornea to transmit light whilst being mechanically resilient is directly attributable to the formation of an extracellular matrix containing orthogonally arranged sheets of densely packed uniformly-narrow collagen fibrils, in which each sheet contains parallel arrays of fibrils. An understanding of the molecular basis of tissue organisation requires knowledge of the detailed 3-dimensional structure of individual collagen fibrils and how they interact to generate higher order structures. in this study adult bovine corneal collagen fibrils were examined using transmission electron microscopy and automated electron tomography to generate three-dimensional volumes of individual fibrils which had been negatively stained. Tilt series images were collected with an angular increment of 2° over a range of ± 70° using a Philips CM200FEG coupled to a TVIPS automated electron tomography system. A microfibrillar substructure was observed throughout the thickness of the fibril (Figure 1). The microfibrils were ∼4 nm in diameter and were oriented in a right-handed helical twist along the length of fibrils. The microfibrils were observed at an angle of 15° to the long axis of the fibril. As the technique of electron tomography generates a threedimensional volume from the data it was possible, for the first time, to visualise the lateral arrangement of molecules within individual fibrils. There were regions where there was a distinct lateral order and other regions which showed a more fluid-like arrangement. The axial positions of most crystallinity corresponded with the location of the C-telopeptides and N-telopeptides as well as a region close to the d-band in the gap structure of the fibrils. The study also demonstrated that the microfibrils are organised in a quasi-hexagonal packing arrangement

The functional organization and fine structure of the tail musculature of the cercariae of Cryptocotyle lingua and Himasthla secunda

Parasitology ◽  
1973 ◽  
Vol 66 (3) ◽  
pp. 487-497 ◽  
Author(s):  
H. D. Chapman
Keyword(s):  
Fine Structure ◽  
Functional Organization ◽  
Three Dimensional ◽  
Muscle Cells ◽  
Serial Sections ◽  
Three Dimensional Reconstruction ◽  
Transmission Electron ◽  
Dimensional Reconstruction ◽  
Electron Microscopes

The functional organization of the tail musculature of two species of cercariae has been studied by examination of serial sections in the light and transmission electron microscopes. A three-dimensional reconstruction of the tail has been established. The fine structure of the muscle cells has been investigated and the complexity of organization is related to the requirement for a fast contracting system in the cercarial tail.

Scanning and Transmission Microscopy of Nematocyst Batteries in Epitheliomuscular Cells of Hydra

1971 ◽  
Vol 29 ◽  
pp. 410-411 ◽  
Author(s):  
Jane A. Westfall ◽  
S. Yamataka ◽  
Paul D. Enos
Keyword(s):  
Electron Microscopy ◽  
Scanning Electron Microscopy ◽  
Osmium Tetroxide ◽  
External Surface ◽  
Three Dimensional ◽  
Surface Structures ◽  
Transmission Microscopy ◽  
Transmission Electron ◽  
Freeze Dried ◽  
Scanning Electron

Scanning electron microscopy (SEM) provides three dimensional details of external surface structures and supplements ultrastructural information provided by transmission electron microscopy (TEM). Animals composed of watery jellylike tissues such as hydras and other coelenterates have not been considered suitable for SEM studies because of the difficulty in preserving such organisms in a normal state. This study demonstrates 1) the successful use of SEM on such tissue, and 2) the unique arrangement of batteries of nematocysts within large epitheliomuscular cells on tentacles of Hydra littoralis.Whole specimens of Hydra were prepared for SEM (Figs. 1 and 2) by the fix, freeze-dry, coat technique of Small and Màrszalek. The specimens were fixed in osmium tetroxide and mercuric chloride, freeze-dried in vacuo on a prechilled 1 Kg brass block, and coated with gold-palladium. Tissues for TEM (Figs. 3 and 4) were fixed in glutaraldehyde followed by osmium tetroxide. Scanning micrographs were taken on a Cambridge Stereoscan Mark II A microscope at 10 KV and transmission micrographs were taken on an RCA EMU 3G microscope (Fig. 3) or on a Hitachi HU 11B microscope (Fig. 4).

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