Laser Tweezers Raman Spectroscopy Potential for Studies of Complex Dynamic Cellular Processes: Single Cell Bacterial Lysis

2009 ◽  
Vol 81 (9) ◽  
pp. 3227-3238 ◽  
Author(s):  
De Chen ◽  
L. Shelenkova ◽  
Y. Li ◽  
C. R. Kempf ◽  
A. Sabelnikov
Blood ◽  
2005 ◽  
Vol 106 (11) ◽  
pp. 4531-4531
Author(s):  
Douglas Scott Taylor ◽  
James W. Chan ◽  
Theodore Zerdling ◽  
Stephen M. Lane ◽  
Ko Ihara ◽  
...  

Abstract Current methods for identifying neoplastic cells and discerning them from normal counterparts are often non-specific, slow, biologically perturbing, or a combination, thereof. Here, we show that single-cell, laser-tweezers Raman spectroscopy (LTRS) averts these shortcomings and also permits mechanical manipulation of the single cell under investigation. LTRS is used to characterize the biomolecular Raman signature of both normal human lymphocytes and transformed Jurkat and Raji lymphocyte cell lines from single, unfixed cells in suspension. We demonstrate that single-cell Raman spectra provide a highly reproducible biomolecular fingerprint. Characteristic peaks, mostly due to different DNA and protein concentrations, allow for discerning normal lymphocytes from transformed lymphocytes with high confidence (p << 0.05). Spectra are also compared and analyzed by principal component analysis (PCA) to demonstrate that normal and transformed cells form distinct clusters that can be defined using just two principal components. The method is shown to have a sensitivity of 98.3% for cancer detection, with 97.2% of the cells being correctly classified as being normal or transformed. These results demonstrate the potential application of LTRS as a clinical tool, research instrument, and for cell sorting based on its intrinsic biomolecular signature, therefore eliminating the need for exogenous fluorescent labeling.


2013 ◽  
Vol 41 (7) ◽  
pp. 656-661.e1 ◽  
Author(s):  
Rui Liu ◽  
Ziliang Mao ◽  
Dennis L. Matthews ◽  
Chin-Shang Li ◽  
James W. Chan ◽  
...  

2021 ◽  
pp. 000370282110245
Author(s):  
Qian Zhang ◽  
Minlu Ye ◽  
Lingyan Wang ◽  
Dongmei Jiang ◽  
Shuting Yao ◽  
...  

Multidrug resistance (MDR) is highly associated with poor prognosis of chronic myeloid leukemia (CML). This work aims to explore whether the laser tweezers Raman spectroscopy (LTRS) could be practical in separating adriamycin (ADR) resistance CML cells K562/ADR from its parental cells K562, and to explore the potential mechanisms. Detection of LTRS initially reflected the spectral differences caused by chemoresistance including bands assigned to carbohydrates, amino acid, protein, lipids and nucleic acid. In addition, principal components analysis (PCA) as well as the classification and regression trees (CRT) algorithms showed that the specificity and sensitivity were above 90%. Moreover, the band data-based CRT model and receiver operating characteristic (ROC) curve further determined some important bands and band intensity ratios to be reliable indexes in discriminating K562 chemoresistance status. Finally, we highlighted three metabolism pathways correlated with chemoresistance. This work demonstrates that the label-free LTRS analysis combined with multivariate statistical analyses have great potential to be a novel analytical strategy at the single-cell level for rapid evaluation the chemoresistance status of K562 cells.


2021 ◽  
Vol 12 (1) ◽  
Author(s):  
Joris J. B. Messelink ◽  
Muriel C. F. van Teeseling ◽  
Jacqueline Janssen ◽  
Martin Thanbichler ◽  
Chase P. Broedersz

AbstractThe order and variability of bacterial chromosome organization, contained within the distribution of chromosome conformations, are unclear. Here, we develop a fully data-driven maximum entropy approach to extract single-cell 3D chromosome conformations from Hi–C experiments on the model organism Caulobacter crescentus. The predictive power of our model is validated by independent experiments. We find that on large genomic scales, organizational features are predominantly present along the long cell axis: chromosomal loci exhibit striking long-ranged two-point axial correlations, indicating emergent order. This organization is associated with large genomic clusters we term Super Domains (SuDs), whose existence we support with super-resolution microscopy. On smaller genomic scales, our model reveals chromosome extensions that correlate with transcriptional and loop extrusion activity. Finally, we quantify the information contained in chromosome organization that may guide cellular processes. Our approach can be extended to other species, providing a general strategy to resolve variability in single-cell chromosomal organization.


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