Depth Matters in Peat Bog Nutrient Cycling

Environmental context Flocculent material (floc) in freshwater and coastal areas of the Florida Everglades plays an important role in food web dynamics and nutrient cycling. Using biomarkers and pigment chemotaxonomy, we determined the organic matter composition of floc from different environments in the Everglades, and found that it is dominated by local biomass inputs and influenced by hydrological regimes. With the on-going restoration of the Florida Everglades, it is important to gain a better understanding of the biogeochemical dynamics of floc, including its sources, transformations and reactivity. Abstract Flocculent material (floc) is an important energy source in wetlands. In the Florida Everglades, floc is present in both freshwater marshes and coastal environments and plays a key role in food webs and nutrient cycling. However, not much is known about its environmental dynamics, in particular its biological sources and bio-reactivity. We analysed floc samples collected from different environments in the Florida Everglades and applied biomarkers and pigment chemotaxonomy to identify spatial and seasonal differences in organic matter sources. An attempt was made to link floc composition with algal and plant productivity. Spatial differences were observed between freshwater marsh and estuarine floc. Freshwater floc receives organic matter inputs from local periphyton mats, as indicated by microbial biomarkers and chlorophyll-a estimates. At the estuarine sites, the floc is dominated by mangrove as well as diatom inputs from the marine end-member. The hydroperiod (duration and depth of inundation) at the freshwater sites influences floc organic matter preservation, where the floc at the short-hydroperiod site is more oxidised likely due to periodic dry-down conditions. Seasonal differences in floc composition were not consistent and the few that were observed are likely linked to the primary productivity of the dominant biomass (periphyton in the freshwater marshes and mangroves in the estuarine zone). Molecular evidence for hydrological transport of floc material from the freshwater marshes to the coastal fringe was also observed. With the on-going restoration of the Florida Everglades, it is important to gain a better understanding of the biogeochemical dynamics of floc, including its sources, transformations and reactivity.

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The impact of porosity on organic matter cycling in a two-dimensional porous medium

10.5194/egusphere-egu21-9432 ◽

2021 ◽

Author(s):

Hanbang Zou ◽

Pelle Ohlsson ◽

Edith Hammer

Keyword(s):

Porous Medium ◽

Organic Matter ◽

Carbon Sequestration ◽

Soil Carbon ◽

Pore Network ◽

Pore Scale ◽

Decomposition Of Organic Matter ◽

Organic Matter Cycling ◽

The Impact

<p>Carbon sequestration has been a popular research topic in recent years as the rapid elevation of carbon emission has significantly impacted our climate. Apart from carbon capture and storage in e.g. oil reservoirs, soil carbon sequestration offers a long term and safe solution for the environment and human beings. The net soil carbon budget is determined by the balance between terrestrial ecosystem sink and sources of respiration to atmospheric carbon dioxide. Carbon can be long term stored as organic matters in the soil whereas it can be released from the decomposition of organic matter. The complex pore networks in the soil are believed to be able to "protect" microbial-derived organic matter from decomposition. Therefore, it is important to understand how soil structure impacts organic matter cycling at the pore scale. However, there are limited experimental studies on understanding the mechanism of physical stabilization of organic matter. Hence, my project plan is to create a heterogeneous microfluidic porous microenvironment to mimic the complex soil pore network which allows us to investigate the ability of organisms to access spaces starting from an initial ecophysiological precondition to changes of spatial accessibility mediated by interactions with the microbial community.</p><p>Microfluidics is a powerful tool that enables studies of fundamental physics, rapid measurements and real-time visualisation in a complex spatial microstructure that can be designed and controlled. Many complex processes can now be visualized enabled by the development of microfluidics and photolithography, such as microbial dynamics in pore-scale soil systems and pore network modification mimicking different soil environments &#8211; earlier considered impossible to achieve experimentally. The microfluidic channel used in this project contains a random distribution of cylindrical pillars of different sizes so as to mimic the variations found in real soil. The randomness in the design creates various spatial availability for microbes (preferential flow paths with dead-end or continuous flow) as an invasion of liquids proceeds into the pore with the lowest capillary entry pressure. In order to study the impact of different porosity in isolation of varying heterogeneity of the porous medium, different pore size chips that use the same randomly generated pore network is created. Those chips have the same location of the pillars, but the relative size of each pillar is scaled. The experiments will be carried out using sterile cultures of fluorescent bacteria, fungi and protists, synthetic communities of combinations of these, or a whole soil community inoculum. We will quantify the consumption of organic matter from the different areas via fluorescent substrates, and the bio-/necromass produced. We hypothesise that lower porosity will reduce the net decomposition of organic matter as the narrower pore throat limits the access, and that net decomposition rate at the main preferential path will be higher than inside branches</p>

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Vegetation Effects on Soil Properties in the Monteagle Sandy Loam Series: Implications for Land‐use Change

Inquiry@Queen's Undergraduate Research Conference Proceedings ◽

10.24908/iqurcp.7470 ◽

2017 ◽

Author(s):

Allison Neil

Keyword(s):

Land Use ◽

Organic Matter ◽

Land Use Change ◽

Soil Properties ◽

Soil Carbon ◽

Sugar Maple ◽

Agricultural Land ◽

Deciduous Forest ◽

Coniferous Forest ◽

The Impact

Soil properties are strongly influenced by the composition of the surrounding vegetation. We investigated soil properties of three ecosystems; a coniferous forest, a deciduous forest and an agricultural grassland, to determine the impact of land use change on soil properties. Disturbances such as deforestation followed by cultivation can severely alter soil properties, including losses of soil carbon. We collected nine 40 cm cores from three ecosystem types on the Roebuck Farm, north of Perth Village, Ontario, Canada. Dominant species in each ecosystem included hemlock and white pine in the coniferous forest; sugar maple, birch and beech in the deciduous forest; grasses, legumes and herbs in the grassland. Soil pH varied little between the three ecosystems and over depth. Soils under grassland vegetation had the highest bulk density, especially near the surface. The forest sites showed higher cation exchange capacity and soil moisture than the grassland; these differences largely resulted from higher organic matter levels in the surface forest soils. Vertical distribution of organic matter varied greatly amongst the three ecosystems. In the forest, more of the organic matter was located near the surface, while in the grassland organic matter concentrations varied little with depth. The results suggest that changes in land cover and land use alters litter inputs and nutrient cycling rates, modifying soil physical and chemical properties. Our results further suggest that conversion of forest into agricultural land in this area can lead to a decline in soil carbon storage.

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Towards a representation of priming on soil carbon decomposition in the global land biosphere model ORCHIDEE (version 1.9.5.2)

Geoscientific Model Development ◽

10.5194/gmd-9-841-2016 ◽

2016 ◽

Vol 9 (2) ◽

pp. 841-855 ◽

Cited By ~ 15

Author(s):

Bertrand Guenet ◽

Fernando Esteban Moyano ◽

Philippe Peylin ◽

Philippe Ciais ◽

Ivan A Janssens

Keyword(s):

Organic Matter ◽

Soil Organic Matter ◽

Soil Carbon ◽

Global Scale ◽

Soil Incubation ◽

First Order ◽

Carbon Decomposition ◽

Litter Manipulation ◽

Global Land ◽

Biosphere Model

Abstract. Priming of soil carbon decomposition encompasses different processes through which the decomposition of native (already present) soil organic matter is amplified through the addition of new organic matter, with new inputs typically being more labile than the native soil organic matter. Evidence for priming comes from laboratory and field experiments, but to date there is no estimate of its impact at global scale and under the current anthropogenic perturbation of the carbon cycle. Current soil carbon decomposition models do not include priming mechanisms, thereby introducing uncertainty when extrapolating short-term local observations to ecosystem and regional to global scale. In this study we present a simple conceptual model of decomposition priming, called PRIM, able to reproduce laboratory (incubation) and field (litter manipulation) priming experiments. Parameters for this model were first optimized against data from 20 soil incubation experiments using a Bayesian framework. The optimized parameter values were evaluated against another set of soil incubation data independent from the ones used for calibration and the PRIM model reproduced the soil incubations data better than the original, CENTURY-type soil decomposition model, whose decomposition equations are based only on first-order kinetics. We then compared the PRIM model and the standard first-order decay model incorporated into the global land biosphere model ORCHIDEE (Organising Carbon and Hydrology In Dynamic Ecosystems). A test of both models was performed at ecosystem scale using litter manipulation experiments from five sites. Although both versions were equally able to reproduce observed decay rates of litter, only ORCHIDEE–PRIM could simulate the observed priming (R2 = 0.54) in cases where litter was added or removed. This result suggests that a conceptually simple and numerically tractable representation of priming adapted to global models is able to capture the sign and magnitude of the priming of litter and soil organic matter.

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Predicting decadal trends and transient responses of radiocarbon storage and fluxes in a temperate forest soil

Biogeosciences ◽

10.5194/bg-9-3013-2012 ◽

2012 ◽

Vol 9 (8) ◽

pp. 3013-3028 ◽

Cited By ~ 19

Author(s):

C. A. Sierra ◽

S. E. Trumbore ◽

E. A. Davidson ◽

S. D. Frey ◽

K. E. Savage ◽

...

Keyword(s):

Organic Matter ◽

Soil Organic Matter ◽

Soil Carbon ◽

Empirical Model ◽

Temperate Forest ◽

Global Environmental Change ◽

Carbon Dynamics ◽

Co2 Efflux ◽

Soil C ◽

Soil Carbon Dynamics

Abstract. Representing the response of soil carbon dynamics to global environmental change requires the incorporation of multiple tools in the development of predictive models. An important tool to construct and test models is the incorporation of bomb radiocarbon in soil organic matter during the past decades. In this manuscript, we combined radiocarbon data and a previously developed empirical model to explore decade-scale soil carbon dynamics in a temperate forest ecosystem at the Harvard Forest, Massachusetts, USA. We evaluated the contribution of different soil C fractions to both total soil CO2 efflux and microbially respired C. We tested the performance of the model based on measurable soil organic matter fractions against a decade of radiocarbon measurements. The model was then challenged with radiocarbon measurements from a warming and N addition experiment to test multiple hypotheses about the different response of soil C fractions to the experimental manipulations. Our results showed that the empirical model satisfactorily predicts the trends of radiocarbon in litter, density fractions, and respired CO2 observed over a decade in the soils not subjected to manipulation. However, the model, modified with prescribed relationships for temperature and decomposition rates, predicted most but not all the observations from the field experiment where soil temperatures and nitrogen levels were increased, suggesting that a larger degree of complexity and mechanistic relations need to be added to the model to predict short-term responses and transient dynamics.

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Greater soil carbon stocks and faster turnover rates with increasing agricultural productivity

SOIL ◽

10.5194/soil-3-1-2017 ◽

2017 ◽

Vol 3 (1) ◽

pp. 1-16 ◽

Cited By ~ 21

Author(s):

Jonathan Sanderman ◽

Courtney Creamer ◽

W. Troy Baisden ◽

Mark Farrell ◽

Stewart Fallon

Keyword(s):

Organic Matter ◽

Soil Carbon ◽

Sugar Content ◽

Bulk Composition ◽

Agricultural Productivity ◽

Carbon Stocks ◽

Decay Rates ◽

Turnover Rates ◽

Soil Carbon Stocks

Abstract. Devising agricultural management schemes that enhance food security and soil carbon levels is a high priority for many nations. However, the coupling between agricultural productivity, soil carbon stocks and organic matter turnover rates is still unclear. Archived soil samples from four decades of a long-term crop rotation trial were analyzed for soil organic matter (SOM) cycling-relevant properties: C and N content, bulk composition by nuclear magnetic resonance (NMR) spectroscopy, amino sugar content, short-term C bioavailability assays, and long-term C turnover rates by modeling the incorporation of the bomb spike in atmospheric 14C into the soil. After > 40 years under consistent management, topsoil carbon stocks ranged from 14 to 33 Mg C ha−1 and were linearly related to the mean productivity of each treatment. Measurements of SOM composition demonstrated increasing amounts of plant- and microbially derived SOM along the productivity gradient. Under two modeling scenarios, radiocarbon data indicated overall SOM turnover time decreased from 40 to 13 years with increasing productivity – twice the rate of decline predicted from simple steady-state models or static three-pool decay rates of measured C pool distributions. Similarly, the half-life of synthetic root exudates decreased from 30.4 to 21.5 h with increasing productivity, indicating accelerated microbial activity. These findings suggest that there is a direct feedback between accelerated biological activity, carbon cycling rates and rates of carbon stabilization with important implications for how SOM dynamics are represented in models.

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Changes in soil carbon under long-term maize in monoculture and legume-based rotation

Canadian Journal of Soil Science ◽

10.4141/s00-041 ◽

2001 ◽

Vol 81 (1) ◽

pp. 21-31 ◽

Cited By ~ 142

Author(s):

E G Gregorich ◽

C F Drury ◽

J A Baldock

Keyword(s):

Nuclear Magnetic Resonance ◽

Organic Matter ◽

Soil Organic Matter ◽

Magnetic Resonance ◽

Soil Carbon ◽

Crop Residues ◽

Cropping Systems ◽

Natural Abundance ◽

Organic C ◽

Soil C

Legume-based cropping systems could help to increase crop productivity and soil organic matter levels, thereby enhancing soil quality, as well as having the additional benefit of sequestering atmospheric C. To evaluate the effects of 35 yr of maize monoculture and legume-based cropping on soil C levels and residue retention, we measured organic C and 13C natural abundance in soils under: fertilized and unfertilized maize (Zea mays L.), both in monoculture and legume-based [maize-oat (Avena sativa L.)-alfalfa (Medicago sativa L.)-alfalfa] rotations; fertilized and unfertilized systems of continuous grass (Poa pratensis L.); and under forest. Solid state 13C nuclear magnetic resonance (NMR) was used to chemically characterize the organic matter in plant residues and soils. Soils (70-cm depth) under maize cropping had about 30-40% less C, and those under continuous grass had about 16% less C, than those under adjacent forest. Qualitative differences in crop residues were important in these systems, because quantitative differences in net primary productivity and C inputs in the different agroecosystems did not account for observed differences in total soil C. Cropping sequence (i.e., rotation or monoculture) had a greater effect on soil C levels than application of fertilizer. The difference in soil C levels between rotation and monoculture maize systems was about 20 Mg C ha-1. The effects of fertilization on soil C were small (~6 Mg C ha-1), and differences were observed only in the monoculture system. The NMR results suggest that the chemical composition of organic matter was little affected by the nature of crop residues returned to the soil. The total quantity of maize-derived soil C was different in each system, because the quantity of maize residue returned to the soil was different; hence the maize-derived soil C ranged from 23 Mg ha-1 in the fertilized and 14 Mg ha-1 in the unfertilized monoculture soils (i.e., after 35 maize crops) to 6-7 Mg ha-1 in both the fertilized and unfertilized legume-based rotation soils (i.e., after eight maize crops). The proportion of maize residue C returned to the soil and retained as soil organic C (i.e., Mg maize-derived soil C/Mg maize residue) was about 14% for all maize cropping systems. The quantity of C3-C below the plow layer in legume-based rotation was 40% greater than that in monoculture and about the same as that under either continuous grass or forest. The soil organic matter below the plow layer in soil under the legume-based rotation appeared to be in a more biologically resistant form (i.e., higher aromatic C content) compared with that under monoculture. The retention of maize residue C as soil organic matter was four to five times greater below the plow layer than that within the plow layer. We conclude that residue quality plays a key role in increasing the retention of soil C in agroecosystems and that soils under legume-based rotation tend to be more “preservative” of residue C inputs, particularly from root inputs, than soils under monoculture. Key words: Soil carbon, 13C natural abundance, 13C nuclear magnetic resonance, maize cropping, legumes, root carbon

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