Warming and Labile Substrate Addition Alter Enzyme Activities and Composition of Soil Organic Carbon

Warming can increase the efflux of carbon dioxide (CO2) from soils and can potentially feedback to climate change. In addition to warming, the input of labile carbon can enhance the microbial activity by stimulating the co-metabolism of recalcitrant soil organic matter (SOM). This is particularly true with SOM under invaded ecosystems where elevated CO2 and warming may increase the biomass of invasive species resulting in higher addition of labile substrates. We hypothesized that the input of labile carbon would instigate a greater soil organic carbon (SOC) loss with warming compared to the ambient temperature. We investigated this by incubating soils collected from a native pine (Pinus taeda) forest to which labile carbon from the invasive species kudzu (Pueraria lobata) was added. We evaluated the microbial extracellular enzyme activity, molecular composition of SOC and the temperature sensitivity of soil CO2 efflux under warming and labile carbon addition. After 14 months of soil incubation, the addition of labile C through kudzu extract increased the activity of β-1,4-glucosidase compared with the control. However, the activity of N-acetyl-β-D-glucosaminidase and fungal biomass (ergosterol) decreased with labile carbon addition. The activity of peroxidase increased with warming after 14 months of soil incubation. Although the carbon content of incubated soils did not vary with substrate and temperature treatments, the molecular composition of SOC indicated a general decrease in biopolymers such as cutin, suberin, long-chain fatty acids, and phytosterol with warming and an increasing trend of microbial-derived compounds with labile substrate addition. In soils that received an addition of labile C, the macro-aggregate stability was higher while the temperature sensitivity of soil C efflux was lower compared with the control. The increase in aggregate stability could enhance the physical protection of SOC from microbial decomposition potentially contributing to the observed pattern of temperature sensitivity. Our results suggest that warming could preferentially accelerate the decomposition of recalcitrant compounds while the addition of labile substrates could enhance microbial-derived compounds that are relatively resistant to further decomposition. Our study further emphasizes that global change factors such as plant invasion and climate change can differentially alter soil microbial activity and the composition of SOC.

Comparing an exponential respiration model to alternative models for soil respiration components in a Canadian wildfire chronosequence (FireResp v1.0)

Forest fires modify soil organic carbon and suppress soil respiration for many decades after the initial disturbance. The associated changes in soil autotrophic and heterotrophic respiration from the time of the forest fire, however, are less well characterized. The FireResp model predicts soil autotrophic and heterotrophic respiration parameterized with a novel dataset across a fire chronosequence in the Yukon and Northwest Territories of Canada. The dataset consisted of soil incubation experiments and field measurements of soil respiration and soil carbon stocks. The FireResp model contains submodels that consider a Q10 (exponential) model of respiration compared to models of heterotrophic respiration using Michaelis–Menten kinetics parameterized with soil microbial carbon. For model evaluation we applied the Akaike information criterion and compared predicted patterns in components of soil respiration across the chronosequence. Parameters estimated with data from the 5 cm soil depth had better model–data comparisons than parameters estimated with data from the 10 cm soil depth. The model–data fit was improved by including parameters estimated from soil incubation experiments. Models that incorporated microbial carbon with Michaelis–Menten kinetics reproduced patterns in autotrophic and heterotrophic soil respiration components across the chronosequence. Autotrophic respiration was associated with aboveground tree biomass at more recently burned sites, but this association was less robust at older sites in the chronosequence. Our results provide support for more structured soil respiration models than standard Q10 exponential models.

Risk of epidemic development in nurseries from soil inoculum of Phytophthora ramorum

Soilborne inoculum arising from buried, infested leaf debris may contribute to the persistence of Phytophthora ramorum at recurrently positive nurseries. To initiate new epidemics, inoculum must not only survive, but produce sporangia during times conducive to infection at the soil surface. To assess this risk, we performed two year-long experiments in a soil plot at the National Ornamentals Research Site at Dominican University of California. Inoculated rhododendron leaf disks were buried at a depth of 5 or 15 cm in the early summer of 2014 or 2015. Inoculum was baited at the soil surface with non-infested leaf disks (2014 only), then retrieved to assess pathogen viability and sporulation capacity every five weeks. Two 14-week-long trials were conducted in 2016. We were able to consistently culture P. ramorum over all time periods. Soil incubation rapidly reduced the capacity of inoculum to sporulate, especially at 5 cm; however, sporulation capacity increased with the onset of seasonally cooler temperatures. P. ramorum was baited most frequently between November and January, especially from inoculum buried at 5 cm 1-day before the baiting period; in January we also baited P. ramorum from inoculum buried at 15 cm the previous June. We validate prior observations that P. ramorum poses a greater risk after exposure to cooler temperatures and provide evidence that infested leaf debris plays a role in the perpetuation of P. ramorum in nurseries. This work provides novel insights into the survival and epidemic behavior of P. ramorum in nursery soils.

Evaluating an exponential respiration model to alternative models for soil respiration components in a Canadian wildfire chronosequence (FireResp, v1.0)

Forest fires modify soil organic carbon and suppress soil respiration for many decades since the initial disturbance. The associated changes in soil autotrophic and heterotrophic respiration from the time of the forest fire however, is less well characterized. We analyzed models of soil autotrophic and heterotrophic respiration with a novel dataset across a fire chronosequence in the Yukon and Northwest Territories of Canada. The dataset consisted of soil incubation experiments and field measurements of soil respiration and soil carbon stocks. The models ranged from a Q10 (exponential) model of respiration to models of heterotrophic respiration using Michaelis-Menten kinetics parameterized with soil microbe carbon. For model evaluation we applied model selection metrics (Akaike Information Criterion) and compared predicted patterns in soil respiration components across the chronosequence. Parameters estimated with data from the 5 cm soil depth had better model-data comparisons than parameters estimated with data from the 10 cm soil depth. The model-data fit was improved by including parameters estimated from soil incubation experiments. Models that incorporated microbial carbon with Michaelis-Menten kinetics reproduced patterns in autotrophic and heterotrophic soil respiration components across the chronosequence. Autotrophic respiration was associated with aboveground tree biomass at more recently burned sites, but this association was less robust at older sites in the chronosequence. Our results provide support for more structured soil respiration models than standard Q10 exponential models.

Pichia kudriavzevii – A potential soil yeast candidate for improving soil physical, chemical and biological properties

Soil yeasts exhibit an array of beneficial effects to plants viz., plant growth promotion, phosphate solubilization, nitrogen and sulphur oxidation, etc. Yeasts remain as poorly investigated group of microorganisms that represent an abundant and dependable source of bioactive/chemically novel compounds and potential bioinoculants. Hence this study holds the key concept of assessing the performance of soil yeasts with potential plant growth promoting ability in soil quality improvement. Sixteen soil yeast isolates with plant growth promoting traits were assessed for biofilm forming potential and five potential soil yeast isolates were selected and identified through molecular technique. Soil incubation study was performed with these isolates to assess their impact on soil physical, chemical and biological properties. Due to inoculation of soil yeasts, notable changes were observed in soil physical, chemical and biological properties. Among the soil yeast isolates, Pichia kudriavzevii gave better results in soil incubation study.

Effects of labile carbon on anaerobic decomposition processes in permafrost wetlands

<p>Climate warming and permafrost thaw are exposing the large carbon (C) pools of northern wetlands to enhanced decomposition, potentially increasing the release of the greenhouse gases carbon dioxide (CO<sub>2</sub>) and methane (CH<sub>4</sub>). Permafrost thaw is usually associated with changes in hydrology and vegetation: Ground collapse leads to the formation of new, productive thermokarst wetlands, and active layer deepening allows plant roots to penetrate to deeper soil layers. These processes promote interaction between old permafrost carbon and recent plant-derived carbon, but the effect of this interaction on anaerobic decomposition processes is poorly known.</p><p>Here, we report the preliminary results of a 1+-year-long soil incubation experiment where we investigated the role of fresh organics on anaerobic decomposition in arctic wetlands. We sampled mineral subsoil of Greenlandic wetland sites and the active layer and permafrost peat in a Swedish palsa mire, and incubated them with and without repeated amendments of <sup>13</sup>C enriched glucose and cellulose. We determined the rate and isotopic composition of CO<sub>2</sub> and CH<sub>4</sub> with an isotopic laser, and estimated the contribution of soil organic matter decomposition vs. added carbon to the total C gas release. These results represent new understanding on how plant-derived organics change the magnitude and composition of C gas, thus affecting the climatic feedbacks from permafrost wetland C pool.</p>

Effect of soil incubation with organics on rhizosphere and bulk soil properties, root and alkaloid content of Withania somnifera L. Dunal and its performance in Jammu Division

Aim: To study the effect of soil incubation with organics on rhizosphere and bulk soil properties, biomass and alkaloid content of Withania somnifera as well as plant performance in soil of subtropical and intermediate zones of Jammu division. Methodology: The pot experiment of Withania somnifera consisted of 11 treatments laid in randomized block design in triplicate. Sampling was done at various days of soil incubation with organics viz. 30, 60, 120 and 180. The plant performance was studied at vegetative and seed maturity stages. In field experiment, the plant performance was studied in soils of subtropical and intermediate zones of Jammu division. Results: The soil properties, root and alkaloid content were found to be maximum in PSB + Azospirillum +Azotobacter + F.Y.M 20t ha-1 + Vermicompost 5t ha-1 treatment.? The?? effect of organics on rhizosphere? and bulk soil properties at days of? soil incubation yielded superior results with respect to soil health, biomass and? alkaloid content in Withania somnifera. Interpretation: The study indicated that soils of Jammu division is well suited for the cultivation of W. somnifera. The study provided framework to develop integrated plant nutrient management strategies in the subtropical region of this high value crop.