scholarly journals Phylogeny and taxonomic revision of Kernia and Acaulium

2020 ◽  
Vol 10 (1) ◽  
Author(s):  
Lei Su ◽  
Hua Zhu ◽  
Yongchun Niu ◽  
Yaxi Guo ◽  
Xiaopeng Du ◽  
...  
Keyword(s):  
Phylogenetic Analysis ◽  
Phylogenetic Analyses ◽  
Elongation Factor ◽  
Taxonomic Revision ◽  
Morphological Characters ◽  
Large Set ◽  
Internal Transcribed Spacer Region ◽  
Tubulin Genes ◽  
Morphological Criteria ◽  
Molecular Phylogenetic

Abstract The genera Kernia and Acaulium comprise species commonly isolated from dung, soil, decaying meat and skin of animal. The taxonomy of these fungi has been controversial and relies mainly on morphological criteria. With the aim to clarify the taxonomy and phylogeny of these fungi, we studied all the available ex-type strains of a large set of species by means of morphological and molecular phylogenetic analyses. Phylogenetic analysis of the partial internal transcribed spacer region (ITS) and the partial 28S rDNA (LSU) showed that the genera Kernia and Acaulium were found to be separated in two distinct lineages in Microascaceae. Based on morphological characters and multilocus phylogenetic analysis of the ITS, LSU, translation elongation factor 1α and β-tubulin genes, the species in Kernia and Acaulium were well separated and two new combinations are introduced, i.e. Acaulium peruvianum and Acaulium retardatum, a new species of Kernia is described, namely Kernia anthracina. Descriptions of the phenotypic features and molecular phylogeny for identification are discussed for accepted species in two genera in this study.

Molecular phylogeny and classification of Chelidurella Verhoeff, stat. restit. (Dermaptera: Forficulidae)

2020 ◽  
pp. 1-37
Author(s):  
Markéta Kirstová ◽  
Robin Kundrata ◽  
Petr Kočárek
Keyword(s):  
Phylogenetic Analysis ◽  
New Species ◽  
Molecular Phylogeny ◽  
Dna Sequences ◽  
Phylogenetic Analyses ◽  
Taxonomic Revision ◽  
Morphological Characters ◽  
Two New Species ◽  
Molecular Phylogenetic

Abstract We present herein the first phylogenetic analysis of the genus Chelidura and the taxonomic revision of the genus Chelidurella, stat. restit., based on DNA sequences. The results confirm the generic status of Chelidurella Verhoeff, 1902 and Mesochelidura Verhoeff, 1902, and they are removed from the synonymy with Chelidura and reinstated as valid genera. Many individual Chelidurella species are defined based on the combination of a few variable characters on the pygidium and forceps, and the systematics and phylogeny of this genus are unclear. The validity of most of the species is revisited here by molecular phylogenetic analyses, and individual morphological characters are evaluated for their relevance in the identification of all described species. We describe two new species to science, Chelidurella galvagnii Kirstová & Kočárek, sp. nov. from Austria, and C. pseudovignai Kočárek & Kirstová, sp. nov. from Italy and Austria; two species, C. guentheri Galvagni, 1994 and C. tatrica Chládek, 2017 are newly synonymized. Critical diagnostic characters are illustrated, and an identification key for males of Chelidurella is provided.

scholarly journals Disentangling relationships among eastern Mediterranean Cymbalaria including description of a novel species from the southern Peloponnese (Greece)

2021 ◽  
Vol 307 (2) ◽  
Author(s):  
Pau Carnicero ◽  
Núria Garcia-Jacas ◽  
Llorenç Sáez ◽  
Theophanis Constantinidis ◽  
Mercè Galbany-Casals
Keyword(s):  
Eastern Mediterranean ◽  
Phylogenetic Analyses ◽  
Taxonomic Revision ◽  
Distribution Patterns ◽  
Morphological Characters ◽  
Molecular Data ◽  
Morphological Data ◽  
Long Distance ◽  
Aegean Islands ◽  
Molecular Phylogenetic

AbstractThe eastern Mediterranean basin hosts a remarkably high plant diversity. Historical connections between currently isolated areas across the Aegean region and long-distance dispersal events have been invoked to explain current distribution patterns of species. According to most recent treatments, at least two Cymbalaria species occur in this area, Cymbalaria microcalyx and C. longipes. The former comprises several intraspecific taxa, treated at different ranks by different authors based on morphological data, evidencing the need of a taxonomic revision. Additionally, some populations of C. microcalyx show exclusive morphological characters that do not match any described taxon. Here, we aim to shed light on the systematics of eastern Mediterranean Cymbalaria and to propose a classification informed by various sources of evidence. We performed molecular phylogenetic analyses using ITS, 3’ETS, ndhF and rpl32-trnL sequences and estimated the ploidy level of some taxa performing relative genome size measures. Molecular data combined with morphology support the division of traditionally delimited C. microcalyx into C. acutiloba, C. microcalyx and C. minor, corresponding to well-delimited nrDNA lineages. Furthermore, we propose to combine C. microcalyx subsp. paradoxa at the species level. A group of specimens previously thought to belong to Cymbalaria microcalyx constitute a well-defined phylogenetic and morphological entity and are described here as a new species, Cymbalaria spetae. Cymbalaria longipes is non-monophyletic, but characterized by being glabrous and diploid, unlike other eastern species. The nrDNA data suggest at least two dispersals from the mainland to the Aegean Islands, potentially facilitated by marine regressions.

scholarly journals A multi-gene phylogeny of Chlorophyllum (Agaricaceae, Basidiomycota): new species, new combination and infrageneric classification

MycoKeys ◽  
2018 ◽  
Vol 32 ◽  
pp. 65-90 ◽  
Author(s):  
Zai-Wei Ge ◽  
Adriaana Jacobs ◽  
Else C. Vellinga ◽  
Phongeun Sysouphanthong ◽  
Retha van der Walt ◽  
...  
Keyword(s):  
New Species ◽  
Rna Polymerase Ii ◽  
Phylogenetic Analyses ◽  
Large Subunit ◽  
Elongation Factor ◽  
Morphological Characters ◽  
Nuclear Ribosomal Dna ◽  
New Combination ◽  
Infrageneric Classification ◽  
Molecular Phylogenetic

Taxonomic and phylogenetic studies of Chlorophyllum were carried out on the basis of morphological differences and molecular phylogenetic analyses. Based on the phylogeny inferred from the internal transcribed spacer (ITS), the partial large subunit nuclear ribosomal DNA (nrLSU), the second largest subunit of RNA polymerase II (rpb2) and translation elongation factor 1-α (tef1) sequences, six well-supported clades and 17 phylogenetic species are recognised. Within this phylogenetic framework and considering the diagnostic morphological characters, two new species, C.africanum and C.palaeotropicum, are described. In addition, a new infrageneric classification of Chlorophyllum is proposed, in which the genus is divided into six sections. One new combination is also made. This study provides a robust basis for a more detailed investigation of diversity and biogeography of Chlorophyllum.

scholarly journals Trichoderma: Systematics, the Sexual State, and Ecology

2006 ◽  
Vol 96 (2) ◽  
pp. 195-206 ◽  
Author(s):  
Gary J. Samuels
Keyword(s):  
Phylogenetic Analyses ◽  
Elongation Factor ◽  
Morphological Characters ◽  
Individual Species ◽  
Botanical Nomenclature ◽  
Translation Elongation ◽  
Trichoderma Species ◽  
Molecular Phylogenetic ◽  
Identification Of Species ◽  
Internal Transcribed Spacer Rdna

A chronology is presented that charts the development of a genus and species concept in Trichoderma. Eighty-nine species of Trichoderma have been named, and several species of Hypocrea have been linked to unnamed Trichoderma anamorphs. Eighty-three taxa of Trichoderma and their teleomorphs, Hypocrea spp., have been included in phylogenetic analyses, including 11 species of Hypocrea with unnamed Trichoderma anamorphs. Phylogenetic analyses show that Trichoderma and Hypocrea are congeneric. Trichoderma species not linked to Hypocrea teleomorphs are derived from among species that are linked to teleomorphs, indicating sexual and asexual lineages are not independent of each other. Many more species remain to be discovered and described. Molecular phylogenetic analyses have revealed the existence of more species than have been recognized on the basis of morphology alone. A suggestion is made to modify the International Code of Botanical Nomenclature to enable adoption of a single generic name for Trichoderma/Hypocrea, with Trichoderma being the older and more utilitarian name. As increasing numbers of species are studied, the few morphological characters of anamorph and teleomorph have reached their limit for defining species. DNA-based characters have assumed an indispensable role. Exploration of new niches, such as within tree trunks and new geographic locations, have resulted in a substantial increase in the number of species of Trichoderma. Trichoderma is usually considered a genus of free-living soil fungi but evidence suggests that Trichoderma species may be opportunistic, avirulent plant symbionts as well as parasites of other fungi. Members of the genus Trichoderma are universally present in soils, although individual species may be either cosmopolitan (e.g., T. harzianum) or limited (e.g., T. viride) in their geographic distribution. To facilitate identification of species, a list of correctly identified strains of Trichoderma and their GenBank numbers for sequences of translation-elongation factor EF-1α and internal transcribed spacer rDNA is provided.

scholarly journals Asproinocybaceae fam. nov. (Agaricales, Agaricomycetes) for Accommodating the Genera Asproinocybe and Tricholosporum, and Description of Asproinocybe sinensis and Tricholosporum guangxiense sp. nov

2021 ◽  
Vol 7 (12) ◽  
pp. 1086
Author(s):  
Guang-Fu Mou ◽  
Tolgor Bau
Keyword(s):  
Rna Polymerase ◽  
Rna Polymerase Ii ◽  
Phylogenetic Analyses ◽  
Elongation Factor ◽  
Small Subunit ◽  
Internal Transcribed Spacer Region ◽  
Independent Family ◽  
New Family ◽  
Family Level ◽  
Molecular Phylogenetic

Asproinocybe and Tricholosporum are not well known, and their placement at the family level remains undetermined. In this study, we conducted molecular phylogenetic analyses based on nuc rDNA internal transcribed spacer region (ITS) and nuc 28S rDNA (nrLSU), and a dataset with six molecular markers (ITS, LSU, RNA polymerase II largest subunit (RPB1), RNA polymerase II second largest subunit (RPB2), 18S nuclear small subunit ribosomal DNA (nrSSU), and translation elongation factor 1-alpha (TEF1-α)) using Bayesian (BA) and Maximum Likelihood (ML) methods, we found that the species of Asproinocybe and Tricholosporum formed an independent family-level clade (0.98/72). Asproinocybaceae fam. nov., a new family, is established here for accommodating this clade. Two new species, Asproinocybe sinensis and Tricholosporum guangxiense, from subtropical and tropical karst areas of China, are also described here.

A new species of Ophiocordyceps (Ophiocordycipitaceae) from Mizoram, India

Phytotaxa ◽  
2021 ◽  
Vol 500 (1) ◽  
pp. 11-20
Author(s):  
ZOHMANGAIHA CHAWNGTHU ◽  
JOSIAH MC VABEIKHOKHEI ◽  
RITA ZOMUANPUII ◽  
SURAJIT DE MANDAL ◽  
JOHN ZOTHANZAMA
Keyword(s):  
Phylogenetic Analysis ◽  
New Species ◽  
Elongation Factor ◽  
Morphological Characters ◽  
Internal Transcribed Spacers ◽  
Paper Wasp ◽  
Molecular Phylogenetic Analysis ◽  
Translation Elongation ◽  
Molecular Phylogenetic ◽  
A New Species

Ophiocordyceps mizoramensisis described as a new species from Mizoram by using a combination of morphological and molecular phylogenetic analysis. The molecular phylogenetic analysis include both the subunits (LSU and SSU), the internal transcribed spacers (ITS1 and ITS2) with the 5.8S gene region, along with Tef (Translation elongation factor). The new species Ophiocordyceps mizoramensis, differs from other closely related species based on molecular phylogenetic relationships, genetic distance, and minor morphological characters related to sexual structures. The entomopathogenic Ophiocordyceps mizoramensis infected the host Polistes olivaceus (paper wasp) causing death to the whole colony of the hive.

scholarly journals Unravelling Diaporthe Species Associated with Woody Hosts from Karst Formations (Guizhou) in China

2020 ◽  
Vol 6 (4) ◽  
pp. 251
Author(s):  
Asha J. Dissanayake ◽  
Ya-Ya Chen ◽  
Jian-Kui (Jack) Liu
Keyword(s):  
Phylogenetic Analysis ◽  
Elongation Factor ◽  
Nature Reserves ◽  
Guizhou Province ◽  
Internal Transcribed Spacer Region ◽  
Translation Elongation ◽  
Elongation Factor 1 Alpha ◽  
Molecular Phylogenetic ◽  
Culture Characteristics ◽  
Elongation Factor 1

Though several Diaporthe species have been reported in China, little is known about the species associated with nature reserves in Guizhou province. During a survey of fungi in six nature reserves in Guizhou province of China, thirty-one Diaporthe isolates were collected from different woody hosts. Based on morphology, culture characteristics and molecular phylogenetic analysis, these isolates were characterized and identified. Phylogenetic analysis of internal transcribed spacer region (ITS), combined with translation elongation factor 1-alpha (tef), β-tubulin (tub), calmodulin (cal) and histone H3 (his) gene regions identified five known Diaporthe species and seven distinct lineages representing novel Diaporthe species. The details of five known species: Diaporthe cercidis, D. cinnamomi, D. conica, D. nobilis and D. sackstonii are given and the seven new species D. constrictospora, D. ellipsospora, D. guttulata, D. irregularis, D. lenispora, D. minima, and D. minusculata are introduced with detailed descriptions and illustrations. This study revealed a high diversity of previously undescribed Diaporthe species associated with woody hosts in various nature reserves of Guizhou province, indicating that there is a potential of Diaporthe species remains to be discovered in this unique landform (Karst formations) in China. Interestingly, the five known Diaporthe species have been reported as pathogens of various hosts, and this could indicate that those newly introduced species in this study could be potentially pathogenic pending further studies to confirm.

Buchwaldoboletus xylophilus and Phlebopus portentosus, two non-ectomycorrhizal boletes from tropical China

Phytotaxa ◽  
2021 ◽  
Vol 520 (2) ◽  
pp. 137-154
Author(s):  
HUI-JING XIE ◽  
CHUN-XIA ZHANG ◽  
MING-XIA HE ◽  
ZHI-QUN LIANG ◽  
XIAO-HUA DENG ◽  
...  
Keyword(s):  
Rna Polymerase Ii ◽  
Dna Sequences ◽  
Phylogenetic Analyses ◽  
Elongation Factor ◽  
Internal Transcribed Spacer Region ◽  
Tropical Asia ◽  
Line Drawings ◽  
Molecular Phylogenetic ◽  
Microscopic Features ◽  
Tropical China

Buchwaldoboletus xylophilus and Phlebopus portentosus (Boletales) are two non-ectomycorrhizal boletes, which are widely reported in tropical Asia. However, there is little information available about the taxonomy of these two boletes. Here, B. xylophilus and P. portentosus are redescribed based on morphology and molecular phylogenetic analyses of DNA sequences from nuclear 28S rDNA (28S), nuc rDNA internal transcribed spacer region ITS1-5.8S-ITS2 (ITS), translation elongation factor 1-α gene (TEF1) and the RNA polymerase II second largest subunit gene (RPB2). Detailed descriptions, color photos of fresh basidiomata, and line-drawings of microscopic features of the two taxa are presented.

scholarly journals A taxonomic revision of Selaginella monospora Spring (Selaginellaceae)

Turczaninowia ◽  
2021 ◽  
Vol 24 (3) ◽  
pp. 175-193
Author(s):  
Alexander P. Shalimov ◽  
Xian-Chun Zhang
Keyword(s):  
Related Species ◽  
Phylogenetic Analyses ◽  
Taxonomic Revision ◽  
Distinct Species ◽  
Morphological Characters ◽  
Closely Related Species ◽  
Molecular Phylogenetic ◽  
The Himalaya ◽  
Made In

During a taxonomic revision of Selaginella from the Himalaya which is a part of the ongoing “Flora of Pan-Himalaya” project, we studied the taxonomy of Selaginella monospora and its closely related species. We found that S. microclada once treated as a synonym of S. monospora should be accepted as a distinct species. In contrast, S. trichophylla, S. monospora var. ciliolata, S. medogensis, and S. effusa var. dulongjiangensis are reduced to synonymy of S. monospora based on molecular phylogenetic analyses and morphological characters. Selaginella monospora is characterized by denticulate to ciliolate leaves and strongly dimorphic sporophylls vs. denticulate leaves and slightly dimorphic sporophylls in S. microclada. A lectotypification of S. medogensis was also made in the present study.

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