scholarly journals An ecological niche shift for Neanderthal populations in Western Europe 70,000 years ago

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
William E. Banks ◽  
Marie-Hélène Moncel ◽  
Jean-Paul Raynal ◽  
Marlon E. Cobos ◽  
Daniel Romero-Alvarez ◽  
...  
Keyword(s):  
Material Culture ◽  
Ecological Niche ◽  
Western Europe ◽  
Ecological Niche Modeling ◽  
Climatic Variability ◽  
Niche Shift ◽  
Ecological Niches ◽  
Middle Paleolithic ◽  
Niche Dynamics ◽  
Anatomically Modern Humans

AbstractMiddle Paleolithic Neanderthal populations occupied Eurasia for at least 250,000 years prior to the arrival of anatomically modern humans. While a considerable body of archaeological research has focused on Neanderthal material culture and subsistence strategies, little attention has been paid to the relationship between regionally specific cultural trajectories and their associated existing fundamental ecological niches, nor to how the latter varied across periods of climatic variability. We examine the Middle Paleolithic archaeological record of a naturally constrained region of Western Europe between 82,000 and 60,000 years ago using ecological niche modeling methods. Evaluations of ecological niche estimations, in both geographic and environmental dimensions, indicate that 70,000 years ago the range of suitable habitats exploited by these Neanderthal populations contracted and shifted. These ecological niche dynamics are the result of groups continuing to occupy habitual territories that were characterized by new environmental conditions during Marine Isotope Stage 4. The development of original cultural adaptations permitted this territorial stability.

scholarly journals Invasion but not hybridisation is associated with ecological niche shift in monkeyflowers

2019 ◽  
Author(s):  
Daniele Da Re ◽  
Angel P. Olivares ◽  
William Smith ◽  
Mario Vallejo-Marín
Keyword(s):  
New Zealand ◽  
Ecological Niche ◽  
Secondary Contact ◽  
Niche Shift ◽  
Ecological Niches ◽  
Introduced Populations ◽  
Niche Dynamics ◽  
Introduced Range ◽  
Niche Shifts ◽  
Native And Introduced Ranges

AbstractBackgroundThe ecological niche occupied by novel hybrids can influence their establishment as well as the potential to coexist with their parents. Hybridisation generates new phenotypic combinations, which, in some cases, may allow them to occupy ecological niches outside the environmental envelope of parental taxa. In other cases, hybrids may retain similar ecological niches to their parents, resulting in competition and affecting their coexistence. To date, few studies have quantitatively assessed niche shifts associated with hybridisation in recently introduced populations while simultaneously characterising the niche of parental species in both native and introduced ranges.AimsIn this study, we compared the ecological niche of a novel hybrid plant with the niches of its two parental taxa in the non-native geographic range. We also characterised and compared the parental taxa’s ecological niche of native and introduced populations in order to assess potential niche changes during the invasion process independent of hybridisation.MethodsWe studied monkeyflowers (Mimulus spp., Phrymaceae) that were introduced from the Americas to Europe and New Zealand in the last 200 years. We focused on a novel hybrid, triploid, asexual taxon (M. × robertsii) that occurs only in the British Isles where its two parents (M. guttatus and M. luteus) come into secondary contact. We assembled more than 12,000 geo-referenced occurrence records and eight environmental variables of the three taxa across native and introduced ranges, and conducted ecological niche model analysis using maximum entropy, principal component and niche dynamics analysis.ResultsWe found no evidence of niche shift in the hybrid, M. × robertsii compared to introduced populations of both of their parental taxa. The hybrid had a niche more similar to M. luteus, which is also the rarest of the parental taxa on the introduced range. Among parental monkeyflowers, M. guttatus showed niche conservatism in introduced populations in Europe, but a niche shift in New Zealand, while M. luteus showed a niche shift in Europe. However, the evidence of niche shift should be treated with caution due to the occurence of non-analog climatic conditions, small population size and unfilling niche dynamics.ConclusionsOur results suggest that hybridisation in non-native monkyeflowers did not result in a shift in ecological niche. This niche conservation could create competition between parental and derived taxa, the outcome of which will depend on relative competitive abilities. Further work is needed to establish if the expansion of the hybrid in the introduced range is causally related to the apparent rarity of one of the parents (M.luteus). Finally, the comparison of native and non-native populations of parental taxa, suggest that whether invasions result in niche shifts or not depends on both taxon and geographic region, highlighting the idiosyncratic nature of biological invasions.

Introduction

2011 ◽  
Author(s):  
A. Townsend Peterson ◽  
Jorge Soberón ◽  
Richard G. Pearson ◽  
Robert P. Anderson ◽  
Enrique Martínez-Meyer ◽  
...  
Keyword(s):  
Conceptual Framework ◽  
Species Distribution ◽  
Ecological Niche ◽  
Ecological Niche Modeling ◽  
Species Distribution Modeling ◽  
Niche Modeling ◽  
Ecological Niches ◽  
Distribution Modeling ◽  
Geographic Distributions ◽  
Complex Relationships

This book deals with ecological niche modeling and species distribution modeling, two emerging fields that address the ecological, geographic, and evolutionary dimensions of geographic distributions of species. It provides a conceptual overview of the complex relationships between ecological niches and geographic distributions of species, both across space and (perhaps to a lesser degree) through time. The emphasis is on how that conceptual framework relates to ecological niche modeling and species distribution modeling, which the book argues are complementary and are most broadly applicable to diverse questions regarding the ecology and geography of biodiversity phenomena. Part I of the book introduces the conceptual framework for thinking about and discussing the distributional ecology of species, Part II is concerned with the data and tools that have been used in the early development of the field, and Part III focuses on real-world situations to which these tools have been applied.

Niches and Distributions in Practice: Overview

2011 ◽  
Author(s):  
A. Townsend Peterson ◽  
Jorge Soberón ◽  
Richard G. Pearson ◽  
Robert P. Anderson ◽  
Enrique Martínez-Meyer ◽  
...  
Keyword(s):  
Environmental Variables ◽  
Ecological Niche ◽  
Ecological Niche Modeling ◽  
Species Distribution Modeling ◽  
Ecological Niches ◽  
Environmental Predictors ◽  
Ecological Requirements ◽  
Process Error ◽  
Error Check ◽  
Niche Models

This chapter considers the practice of modeling ecological niches and estimating geographic distributions. It first introduces the general principles and definitions underlying ecological niche modeling and species distribution modeling, focusing on model calibration and evaluation, before discussing the principal steps to be followed in building niche models. The first task in building a niche model is to collate, process, error-check, and format the data that are necessary as input. Two types of data are required: primary occurrence data documenting known presences (and sometimes absences) of the species, and environmental predictors in the form of raster-format GIS layers summarizing scenopoetic variables that may (or may not) be involved in delineating the ecological requirements of the species. The next step is to use a modeling algorithm to characterize the species’ ecological niche as a function of the environmental variables, followed by model projection and evaluation and finally, model transferability.

Ecological Niche Modeling of the Main Forest-Forming Species in the Caucasus

2021 ◽  
Author(s):  
R. Pshegusov ◽  
F. Tembotova ◽  
V. Chadaeva ◽  
Y. Sablirova ◽  
M. Mollaeva ◽  
...  
Keyword(s):  
Spatial Distribution ◽  
Ecological Niche ◽  
Ecological Niche Modeling ◽  
Niche Modeling ◽  
Ecological Niches ◽  
Species Dispersal ◽  
The Caucasus ◽  
Distribution Maps ◽  
Dispersal Capability ◽  
Birch Forests

Abstract Background: Ecological niche modeling of the main forest-forming species within the same geographic range contributes significantly to understanding the coexistence of species and the regularities of formation of their current spatial distribution. The main abiotic and biotic environmental variables, as well as species dispersal capability, affecting the spatial distribution of the main forest-forming species in the Caucasus, have not been sufficiently studied.Methods: We conducted studies within the physiographic boundaries of the Caucasus, including Russian Federation, Georgia, Armenia, and Azerbaijan. Our studies focused on ecological niche modeling of pure fir, spruce, pine, beech, hornbeam, and birch forests through species distribution modeling and the concept of the BAM (Biotic-Abiotic-Movement) diagram. We selected 648 geographic records of pure forests occurrence. ENVIREM and SoilGrids databases, statistical tools in R, Maxent were used to assess the influence of abiotic, biotic, and movement factors on the spatial distribution of the forest-forming species.Results: Geographic expression of fundamental ecological niches of the main forest-forming species depended mainly on topographic conditions and water regime. Competitor influence reduced the potential ranges of the studied species by 1.2–1.7 times to the geographic expression of their realized ecological niches. Movement factor significantly limited the areas suitable for pure forests (by 1.2–1.8 times compared with geographic expression of realized ecological niches), except for birch forests.Conclusion: Distribution maps, modeled by abiotic, biotic variables and movement factor, were the closest to the real distribution of the forest-forming species in the Caucasus. Biotic and movement factors should be considered in modeling studies of forest ecosystems if models are to have biological meaning and reality.

Conclusions

2011 ◽  
Author(s):  
A. Townsend Peterson ◽  
Jorge Soberón ◽  
Richard G. Pearson ◽  
Robert P. Anderson ◽  
Enrique Martínez-Meyer ◽  
...  
Keyword(s):  
Statistical Theory ◽  
Population Biology ◽  
Ecological Niche ◽  
Ecological Niche Modeling ◽  
Species Distributions ◽  
Niche Modeling ◽  
Ecological Niches ◽  
Niche Conservatism ◽  
Comprehensive Framework ◽  
Future Work

This book has described a comprehensive framework for thinking about the geography and ecology of species distributions, arguing that such a framework is critical to further progress in the field of ecological niches and distributions. To develop this framework, traditional concepts in ecology have been radically reworked. In this conclusion, some of the challenges for future work regarding ecological niche modeling are discussed, such as fully integrating the BAM diagram with central concepts of population biology and statistical theory; clarifying the notion of niche conservatism versus niche evolution as regards scenopoetic versus bionomic environmental dimensions; and improving the link between correlational and mechanistic approaches to estimating and understanding ecological niches. The book argues that careful conceptual thinking must be combined with detailed empirical exploration in order to address each of these challenges.

Controls on niche stability in geologic time: congruent responses to biotic and abiotic environmental changes among Cincinnatian (Late Ordovician) marine invertebrates

Paleobiology ◽  
10.1666/13035 ◽  
2014 ◽  
Vol 40 (1) ◽  
pp. 70-90 ◽  
Author(s):  
Hannah-Maria R. Brame ◽  
Alycia L. Stigall
Keyword(s):  
Sea Level ◽  
Ecological Niche ◽  
Ecological Niche Modeling ◽  
Environmental Changes ◽  
Marine Invertebrates ◽  
Relative Effect ◽  
Late Ordovician ◽  
Ecological Niches ◽  
Niche Evolution ◽  
Temporal Intervals

The set of environmental conditions under which a taxon can survive and maintain viable populations, known as the ecological niche, is a fundamental determinant of a taxon's distribution. Because of the central importance of ecological niches, they have been assumed to remain relatively stable during intervals of morphological stasis. However, the assumption of niche stability has rarely been tested directly with fossil data spanning multiple temporal intervals. Thus, the conditions under which this assumption is likely to be accurate are not well understood. In this study, we use ecological niche modeling (ENM) to reconstruct the ecological niche for 11 genera of marine benthos (crinoids, trilobites, molluscs, bryozoans, and corals) from the Type Cincinnatian Series (Late Ordovician, Katian Stage) across nine temporal intervals spanning approximately three million years. This interval includes both abiotic environmental change (gradual sea-level fall) and biotic change (rapid pulses of the Richmondian Invasion), thus allowing the relative effect of different environmental perturbations to be constrained. A previous symmetrical analysis of niche stability of brachiopod species recovered an increase in niche evolution following the Richmondian Invasion. Herein we test the generality of the brachiopod pattern within the community. Niche stability was evaluated in geographic space, ecological space, and niche parameter space. Niche stability varied through time; during the Pre-Invasion interval, taxa exhibited niche stability during gradual shallowing of sea level in the basin, whereas niche evolution became more common during the Richmondian Invasion. Taxa adjusted to the increased competition by altering aspects of their niche. Notably, surviving taxa contracted their niche into a subset of their previous niche parameters. This represents an adaptive response to increased competition for resources with the newly established invader taxa, and it was employed most successfully by generalist taxa. Patterns of niche evolution were congruent between clades, among feeding styles, and across taxonomic levels.

scholarly journals Within outlying mean indexes: refining the OMI analysis for the realized niche decomposition

2017 ◽  
Author(s):  
Stéphane Karasiewicz ◽  
Sylvain Dolédec ◽  
Sébastien Lefebvre
Keyword(s):  
Climate Change ◽  
Ecological Niche ◽  
Environmental Gradient ◽  
Niche Shift ◽  
Habitat Conditions ◽  
Realized Niche ◽  
Niche Dynamics ◽  
Niche Concept ◽  
The Difference ◽  
Definition Of

The ecological niche concept has a revival interest under climate change, especially to study its impact on niche shift and/or conservatism. Here, we propose the Within Outlying Mean Indexes (WitOMI), which refines the Outlying Mean Index (OMI) analysis by using its properties in combination with the K-select analysis species marginality decomposition. The purpose is to decompose the ecological niche, into subniches associated to the experimental design, i.e. taking into account temporal or spatial subsets. WitOMI emphasizes the habitat conditions that contribute 1) to the definition of species’ niches using all available conditions and, at the same time, 2) to the delineation of species’ subniches according to given subsets of dates or sites. This latter aspect allows addressing niche dynamics by highlighting the influence of atypical habitat conditions on species at a given time or space. 3) Then, the biological constraint exerted on the species subniche becomes observable within the Euclidean space as the difference between the potential subniche and the realized subniche. We illustrate the decomposition of published OMI analysis, using spatial and temporal examples. The species assemblage’s subniches are comparable to the same environmental gradient, producing a more accurate and precise description of the assemblage niche distribution under climate change.

scholarly journals Within outlying mean indexes: refining the OMI analysis for the realized niche decomposition

2017 ◽  
Author(s):  
Stéphane Karasiewicz ◽  
Sylvain Dolédec ◽  
Sébastien Lefebvre
Keyword(s):  
Climate Change ◽  
Ecological Niche ◽  
Environmental Gradient ◽  
Niche Shift ◽  
Habitat Conditions ◽  
Realized Niche ◽  
Niche Dynamics ◽  
Niche Concept ◽  
The Difference ◽  
Definition Of

The ecological niche concept has a revival interest under climate change, especially to study its impact on niche shift and/or conservatism. Here, we propose the Within Outlying Mean Indexes (WitOMI), which refines the Outlying Mean Index (OMI) analysis by using its properties in combination with the K-select analysis species marginality decomposition. The purpose is to decompose the ecological niche, into subniches associated to the experimental design, i.e. taking into account temporal or spatial subsets. WitOMI emphasizes the habitat conditions that contribute 1) to the definition of species’ niches using all available conditions and, at the same time, 2) to the delineation of species’ subniches according to given subsets of dates or sites. This latter aspect allows addressing niche dynamics by highlighting the influence of atypical habitat conditions on species at a given time or space. 3) Then, the biological constraint exerted on the species subniche becomes observable within the Euclidean space as the difference between the potential subniche and the realized subniche. We illustrate the decomposition of published OMI analysis, using spatial and temporal examples. The species assemblage’s subniches are comparable to the same environmental gradient, producing a more accurate and precise description of the assemblage niche distribution under climate change.

scholarly journals Within outlying mean indexes: refining the OMI analysis for the realized niche decomposition

PeerJ ◽  
2017 ◽  
Vol 5 ◽  
pp. e3364 ◽  
Author(s):  
Stéphane Karasiewicz ◽  
Sylvain Dolédec ◽  
Sébastien Lefebvre
Keyword(s):  
Environmental Change ◽  
Ecological Niche ◽  
R Package ◽  
Habitat Destruction ◽  
Niche Shift ◽  
Habitat Conditions ◽  
Niche Dynamics ◽  
Niche Concept ◽  
The Difference ◽  
Definition Of

The ecological niche concept has regained interest under environmental change (e.g., climate change, eutrophication, and habitat destruction), especially to study the impacts on niche shift and conservatism. Here, we propose the within outlying mean indexes (WitOMI), which refine the outlying mean index (OMI) analysis by using its properties in combination with theK-select analysis species marginality decomposition. The purpose is to decompose the ecological niche into subniches associated with the experimental design, i.e., taking into account temporal and/or spatial subsets. WitOMI emphasize the habitat conditions that contribute (1) to the definition of species’ niches using all available conditions and, at the same time, (2) to the delineation of species’ subniches according to given subsets of dates or sites. The latter aspect allows addressing niche dynamics by highlighting the influence of atypical habitat conditions on species at a given time and/or space. Then, (3) the biological constraint exerted on the species subniche becomes observable within Euclidean space as the difference between the existing fundamental subniche and the realized subniche. We illustrate the decomposition of published OMI analyses, using spatial and temporal examples. The species assemblage’s subniches are comparable to the same environmental gradient, producing a more accurate and precise description of the assemblage niche distribution under environmental change. The WitOMI calculations are available in the open-access R package “subniche.”

Modeling Ecological Niches

2011 ◽  
Author(s):  
A. Townsend Peterson ◽  
Jorge Soberón ◽  
Richard G. Pearson ◽  
Robert P. Anderson ◽  
Enrique Martínez-Meyer ◽  
...  
Keyword(s):  
Ecological Niche ◽  
Ecological Niche Modeling ◽  
Environmental Data ◽  
Model Complexity ◽  
Ecological Niches ◽  
Calibration Model ◽  
Environmental Space ◽  
Definition Of ◽  
Species Occurrences ◽  
True Relationship

This chapter explains how environmental data can be used to create models that characterize species’ ecological niches in environmental space. It introduces a model, which is a function constructed by means of data analysis for the purpose of approximating the true relationship (that is, the niche) in the form of the function f linking the environment and species occurrences. The chapter first considers the “meaning” of the function f that is being estimated by the algorithms before discussing the modeling algorithms, the approaches used to implement ecological niche modeling, model calibration, model complexity and overfitting, and model extrapolation and transferability. The chapter concludes with an overview of differences among methods and selection of “best” models, along with strategies for characterizing ecological niches in ways that allow visualization, comparisons, definition of quantitative measures, snf more.

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