scholarly journals Multi GPU parallelization of maximum likelihood expectation maximization method for digital rock tomography data

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Jaya Prakash ◽  
Umang Agarwal ◽  
Phaneendra K. Yalavarthy

AbstractDigital rock is an emerging area of rock physics, which involves scanning reservoir rocks using X-ray micro computed tomography (XCT) scanners and using it for various petrophysical computations and evaluations. The acquired micro CT projections are used to reconstruct the X-ray attenuation maps of the rock. The image reconstruction problem can be solved by utilization of analytical (such as Feldkamp–Davis–Kress (FDK) algorithm) or iterative methods. Analytical schemes are typically computationally more efficient and hence preferred for large datasets such as digital rocks. Iterative schemes like maximum likelihood expectation maximization (MLEM) are known to generate accurate image representation over analytical scheme in limited data (and/or noisy) situations, however iterative schemes are computationally expensive. In this work, we have parallelized the forward and inverse operators used in the MLEM algorithm on multiple graphics processing units (multi-GPU) platforms. The multi-GPU implementation involves dividing the rock volumes and detector geometry into smaller modules (along with overlap regions). Each of the module was passed onto different GPU to enable computation of forward and inverse operations. We observed an acceleration of $$\sim 30$$ ∼ 30 times using our multi-GPU approach compared to the multi-core CPU implementation. Further multi-GPU based MLEM obtained superior reconstruction compared to traditional FDK algorithm.

2019 ◽  
Author(s):  
Mohammed Ali Garba ◽  
Stephanie Vialle ◽  
Mahyar Madadi ◽  
Boris Gurevich ◽  
Maxim Lebedev

Abstract. Electrical properties of rocks are important parameters for well-log and reservoir interpretation. Laboratory measurements of such properties are time-consuming, difficult, and are impossible in some cases. Being able to compute them from 3-D images of small samples will allow generating massive data in a short time, opening new avenues in applied and fundamental science. To become a reliable method, the accuracy of this technology needs to be tested. In this study, we developed a comprehensive and robust workflow with clean sand from two beaches. Electrical conductivities at 1 kHz were first carefully measured in the laboratory. A range of porosities spanning from a minimum of 0.26 to 0.33 to a maximum of 0.39 to 0.44, depending on the samples. Such range was achieved by compacting the samples in a way that reproduces natural packing of sand. Characteristic electrical formation factor versus porosity relationships were then obtain for each sand type. 3-D micro-computed tomography images of each sand sample from the experimental sand pack were acquired at different resolutions. Image processing was done using global thresholding method and up to 96 sub-samples of sizes from (200)3 to (700)3 voxels. After segmentation, the images were used to compute the effective electrical conductivity of the sub-cubes using a Finite Element electrostatic modelling. For the samples, a good agreement between laboratory measurements and computation from digital cores was found, if the sub-cube size REV is reached that is between (1300 μm)3 and (1820 μm)3, which, with an average grain size of 160 μm, is between 8 and 11 grains. Computed digital rock images of the clean sands have opened a way forward in getting the formation factor within a shortest possible time; laboratory calculations take five (5) to thirty-five (35) days as in the case of clean and shaly sands respectively, whereas, the digital tomography takes just three (3) to five (5) hours.


2017 ◽  
Vol 2017 ◽  
pp. 1-10 ◽  
Author(s):  
Shanghai Jiang ◽  
Peng He ◽  
Luzhen Deng ◽  
Mianyi Chen ◽  
Biao Wei

X-ray fluorescence computed tomography (XFCT) based on sheet beam can save a huge amount of time to obtain a whole set of projections using synchrotron. However, it is clearly unpractical for most biomedical research laboratories. In this paper, polychromatic X-ray fluorescence computed tomography with sheet-beam geometry is tested by Monte Carlo simulation. First, two phantoms (A and B) filled with PMMA are used to simulate imaging process through GEANT 4. Phantom A contains several GNP-loaded regions with the same size (10 mm) in height and diameter but different Au weight concentration ranging from 0.3% to 1.8%. Phantom B contains twelve GNP-loaded regions with the same Au weight concentration (1.6%) but different diameter ranging from 1 mm to 9 mm. Second, discretized presentation of imaging model is established to reconstruct more accurate XFCT images. Third, XFCT images of phantoms A and B are reconstructed by filter back-projection (FBP) and maximum likelihood expectation maximization (MLEM) with and without correction, respectively. Contrast-to-noise ratio (CNR) is calculated to evaluate all the reconstructed images. Our results show that it is feasible for sheet-beam XFCT system based on polychromatic X-ray source and the discretized imaging model can be used to reconstruct more accurate images.


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