scholarly journals The human caspase-2 gene: alternative promoters, pre-mRNA splicing and AUG usage direct isoform-specific expression

Oncogene ◽  
2003 ◽  
Vol 22 (6) ◽  
pp. 935-946 ◽  
Author(s):  
Emmanuelle Logette ◽  
Anne Wotawa ◽  
Stéphanie Solier ◽  
Lydie Desoche ◽  
Eric Solary ◽  
...  
FEBS Letters ◽  
2007 ◽  
Vol 582 (2) ◽  
pp. 372-378 ◽  
Author(s):  
Stéphanie Solier ◽  
Marie-Cécile De Cian ◽  
Ali Bettaieb ◽  
Lydie Desoche ◽  
Eric Solary ◽  
...  

FEBS Letters ◽  
2008 ◽  
Vol 582 (4) ◽  
pp. 536-536
Author(s):  
Stéphanie Solier ◽  
Marie-Cécile De Cian ◽  
Ali Bettaieb ◽  
Lydie Desoche ◽  
Eric Solary ◽  
...  

2002 ◽  
Vol 64 (2) ◽  
pp. 514-524 ◽  
Author(s):  
Chiho Sumi-Ichinose ◽  
Seiko Hasegawa ◽  
Hiroshi Ichinose ◽  
Hirohide Sawada ◽  
Kazuto Kobayashi ◽  
...  

1997 ◽  
Vol 75 (7) ◽  
pp. 512-521 ◽  
Author(s):  
Hans-Dieter Orzechowski ◽  
Claus-Michael Richter ◽  
Heiko Funke-Kaiser ◽  
Burkhard Kröger ◽  
Martin Schmidt ◽  
...  

2007 ◽  
Vol 406 (3) ◽  
pp. 491-499 ◽  
Author(s):  
Elizabeth A. Shephard ◽  
Pritpal Chandan ◽  
Milena Stevanovic-Walker ◽  
Mina Edwards ◽  
Ian R. Phillips

In humans, expression of the FMO1 (flavin-containing mono-oxygenase 1) gene is silenced postnatally in liver, but not kidney. In adult mouse, however, the gene is active in both tissues. We investigated the basis of this species-dependent tissue-specific transcription of FMO1. Our results indicate the use of three alternative promoters. Transcription of the gene in fetal human and adult mouse liver is exclusively from the P0 promoter, whereas in extra-hepatic tissues of both species, P1 and P2 are active. Reporter gene assays showed that the proximal P0 promoters of human (hFMO1) and mouse (mFmo1) genes are equally effective. However, sequences upstream (−2955 to −506) of the proximal P0 of mFmo1 increased reporter gene activity 3-fold, whereas hFMO1 upstream sequences (−3027 to −541) decreased reporter gene activity by 75%. Replacement of the upstream sequence of human P0 with the upstream sequence of mouse P0 increased activity of the human proximal P0 8-fold. Species-specific repetitive elements are present immediately upstream of the proximal P0 promoters. The human gene contains five LINE (long-interspersed nuclear element)-1-like elements, whereas the mouse gene contains a poly A region, an 80-bp direct repeat, an LTR (long terminal repeat), a SINE (short-interspersed nuclear element) and a poly T tract. The rat and rabbit FMO1 genes, which are expressed in adult liver, lack some (rat) or all (rabbit) of the elements upstream of mouse P0. Thus silencing of FMO1 in adult human liver is due apparently to the presence upstream of the proximal P0 of L1 (LINE-1) elements rather than the absence of retrotransposons similar to those found in the mouse gene.


PLoS ONE ◽  
2013 ◽  
Vol 8 (7) ◽  
pp. e67925 ◽  
Author(s):  
Erling A. Hoivik ◽  
Solveig L. Witsoe ◽  
Inger R. Bergheim ◽  
Yunjian Xu ◽  
Ida Jakobsson ◽  
...  

2010 ◽  
Vol 427 (3) ◽  
pp. 377-390 ◽  
Author(s):  
Jing Chen ◽  
Harpal S. Randeva

Orexins (hypocretins), acting via their receptors, are involved in the control of feeding behaviour, sleep, arousal and energy homoeostasis. However, regulation of the human orexin receptor 2 (hOX2R) gene remains unknown. We have identified four transcripts arising from alternative splicing from three exons. These exon 1 variants were designated exons 1A, 1B and 1C on the basis of their 5′–3′ order. RT (reverse transcription)–PCR demonstrates the differential expression in various human tissues. The alternative 5′-UTRs (untranslated regions) possessed by these isoforms have different translational efficiencies, which regulate the level of protein expression. In the present study, we have demonstrated that the hOX2R gene is regulated by two promoters and the novel transcripts are regulated by the distal promoter located upstream of exon 1A. We have demonstrated that the AP-1 (activator protein 1) motif is critical for sustaining the basal activity of distal promoter. Analysis of the proximal promoter revealed the region regulating promoter activity contained putative binding elements including those for CREB (cAMP-response-element-binding protein), GATA-2 and Oct-1. Using the chromatin immunoprecipitation assay, we demonstrated that CREB, GATA-2 and Oct-1 transcription factors bind to these critical regulatory promoter elements. Mutational studies suggested that these motifs functioned independently, but have a compound effect regulating hOX2R gene transcription. Furthermore, proximal promoter activity is enhanced by both PKA (protein kinase A) and PKC (protein kinase C) pathway activation, via binding of CREB and GATA-2 transcription factors. In conclusion, we have demonstrated that expression of hOX2R is regulated by a complex involving a proximal PKA/PKC-regulated promoter and a distal promoter regulating tissue-specific expression of alternative transcripts which in turn post-transcriptionally regulate receptor levels.


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