scholarly journals Antimicrobial and cell-compatible surface-attached polymer networks – how the correlation of chemical structure to physical and biological data leads to a modified mechanism of action

2015 ◽  
Vol 3 (30) ◽  
pp. 6224-6238 ◽  
Author(s):  
Peng Zou ◽  
Dougal Laird ◽  
Esther K. Riga ◽  
Zhuoling Deng ◽  
Franziska Dorner ◽  
...  

In this paper, we investigate the correlation of physical parameters and antimicrobial activity.

2014 ◽  
Vol 14 (11) ◽  
pp. 941-952
Author(s):  
Eugenia Pinto ◽  
Helena Neves ◽  
Karnjana Hrimpeng ◽  
Ana-Filipa Silva ◽  
Agathe Begouin ◽  
...  

Author(s):  
Elahe Omidbakhsh Amiri ◽  
Jamshid Farmani ◽  
Zeynab Raftani Amiri ◽  
Ali Dehestani ◽  
Mojtaba Mohseni

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Noriyoshi Isozumi ◽  
Yuya Masubuchi ◽  
Tomohiro Imamura ◽  
Masashi Mori ◽  
Hironori Koga ◽  
...  

AbstractA model legume, Medicago truncatula, has over 600 nodule-specific cysteine-rich (NCR) peptides required for symbiosis with rhizobia. Among them, NCR169, an essential factor for establishing symbiosis, has four cysteine residues that are indispensable for its function. However, knowledge of NCR169 structure and mechanism of action is still lacking. In this study, we solved two NMR structures of NCR169 caused by different disulfide linkage patterns. We show that both structures have a consensus C-terminal β-sheet attached to an extended N-terminal region with dissimilar features; one moves widely, whereas the other is relatively stapled. We further revealed that the disulfide bonds of NCR169 contribute to its structural stability and solubility. Regarding the function, one of the NCR169 oxidized forms could bind to negatively charged bacterial phospholipids. Furthermore, the positively charged lysine-rich region of NCR169 may be responsible for its antimicrobial activity against Escherichia coli and Sinorhizobium meliloti. This active region was disordered even in the phospholipid bound state, suggesting that the disordered conformation of this region is key to its function. Morphological observations suggested the mechanism of action of NCR169 on bacteria. The present study on NCR169 provides new insights into the structure and function of NCR peptides.


Peptides ◽  
2013 ◽  
Vol 42 ◽  
pp. 55-62 ◽  
Author(s):  
Norihiro Takei ◽  
Nobuteru Takahashi ◽  
Tomohiro Takayanagi ◽  
Atsuo Ikeda ◽  
Kenji Hashimoto ◽  
...  

Author(s):  
Yoshihiro Yamanishi ◽  
Hisashi Kashima

In silico prediction of compound-protein interactions from heterogeneous biological data is critical in the process of drug development. In this chapter the authors review several supervised machine learning methods to predict unknown compound-protein interactions from chemical structure and genomic sequence information simultaneously. The authors review several kernel-based algorithms from two different viewpoints: binary classification and dimension reduction. In the results, they demonstrate the usefulness of the methods on the prediction of drug-target interactions and ligand-protein interactions from chemical structure data and genomic sequence data.


1979 ◽  
Vol 34 (11) ◽  
pp. 1021-1023 ◽  
Author(s):  
J. J. S. van Rensen ◽  
J. H. Hobé

Abstract The herbicide 4,6-dinitro-o-cresol inhibits electron transport to ferricyanide and non-cyclic photophosphorylation for 50% at about 15 μm. At higher concentrations the photosystem I depen­dent Mehler reaction ascorbate/dichlorophenolindophenol to methyl viologen is stimulated, while cyclic photophosphorylation is inhibited. The herbicide thus is an inhibitory uncoupler. Although the chemical structure of 4,6-dinitro-o-cresol is different from that of the diuron-type herbicides, its site and mechanism of action is similar. Both 4,6-dinitro-o-cresol and diuron inhibit electron transport between the primary electron acceptor of Photosystem II and the plastoquinone pool. This causes a closing of the reaction centers of Photosystem II. The interaction with the inhibited molecule however is different for the two herbicides.


Sign in / Sign up

Export Citation Format

Share Document