scholarly journals Single-molecule imaging and kinetic analysis of intermolecular polyoxometalate reactions

2021 ◽  
Author(s):  
Jack W. Jordan ◽  
Kayleigh L. Y. Fung ◽  
Stephen T. Skowron ◽  
Christopher S. Allen ◽  
Johannes Biskupek ◽  
...  

We induce and study reactions of polyoxometalate (POM) molecules, [PW12O40]3− (Keggin) and [P2W18O62]6− (Wells–Dawson), at the single-molecule level, utilising TEM as an analytical tool, and nanotubes as test tubes.

2015 ◽  
Vol 87 (8) ◽  
pp. 4100-4103 ◽  
Author(s):  
Anders Gunnarsson ◽  
Arjan Snijder ◽  
Jennifer Hicks ◽  
Jenny Gunnarsson ◽  
Fredrik Höök ◽  
...  

eLife ◽  
2015 ◽  
Vol 4 ◽  
Author(s):  
Robert Alexander Wu ◽  
Yavuz S Dagdas ◽  
S Tunc Yilmaz ◽  
Ahmet Yildiz ◽  
Kathleen Collins

Telomerase synthesizes chromosome-capping telomeric repeats using an active site in telomerase reverse transcriptase (TERT) and an integral RNA subunit template. The fundamental question of whether human telomerase catalytic activity requires cooperation across two TERT subunits remains under debate. In this study, we describe new approaches of subunit labeling for single-molecule imaging, applied to determine the TERT content of complexes assembled in cells or cell extract. Surprisingly, telomerase reconstitutions yielded heterogeneous DNA-bound TERT monomer and dimer complexes in relative amounts that varied with assembly and purification method. Among the complexes, cellular holoenzyme and minimal recombinant enzyme monomeric for TERT had catalytic activity. Dimerization was suppressed by removing a TERT domain linker with atypical sequence bias, which did not inhibit cellular or minimal enzyme assembly or activity. Overall, this work defines human telomerase DNA binding and synthesis properties at single-molecule level and establishes conserved telomerase subunit architecture from single-celled organisms to humans.


Tuberculosis ◽  
2019 ◽  
Vol 119 ◽  
pp. 101862 ◽  
Author(s):  
Yuanyuan Chen ◽  
Zhengyan Zhan ◽  
Hongtai Zhang ◽  
Lijun Bi ◽  
Xian-En Zhang ◽  
...  

2014 ◽  
Vol 111 (27) ◽  
pp. 9810-9815 ◽  
Author(s):  
Kimihide Hayakawa ◽  
Shotaro Sakakibara ◽  
Masahiro Sokabe ◽  
Hitoshi Tatsumi

2020 ◽  
Vol 22 (26) ◽  
pp. 14613-14620
Author(s):  
Simli Dey ◽  
Anirban Das ◽  
Arpan Dey ◽  
Sudipta Maiti

Single molecule imaging addresses the “which oligomer” question in membrane mediated toxicity of amyloid oligomers.


2020 ◽  
Vol 10 (1) ◽  
Author(s):  
Avtar Singh ◽  
Alexander L. Van Slyke ◽  
Maria Sirenko ◽  
Alexander Song ◽  
Paul J. Kammermeier ◽  
...  

Abstract The composition, stoichiometry and interactions of supramolecular protein complexes are a critical determinant of biological function. Several techniques have been developed to study molecular interactions and quantify subunit stoichiometry at the single molecule level. However, these typically require artificially low expression levels or detergent isolation to achieve the low fluorophore concentrations required for single molecule imaging, both of which may bias native subunit interactions. Here we present an alternative approach where protein complexes are assembled at physiological concentrations and subsequently diluted in situ for single-molecule level observations while preserving them in a near-native cellular environment. We show that coupling this dilution strategy with fluorescence correlation spectroscopy permits quantitative assessment of cytoplasmic oligomerization, while stepwise photobleaching and single molecule colocalization may be used to study the subunit stoichiometry of membrane receptors. Single protein recovery after dilution (SPReAD) is a simple and versatile means of extending the concentration range of single molecule measurements into the cellular regime while minimizing potential artifacts and perturbations of protein complex stoichiometry.


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