Mechanistic underpinning of cell aspect ratio-dependent emergent collective motions in swarming bacteria

Soft Matter ◽  
2021 ◽  
Author(s):  
Palash Bera ◽  
Abdul Wasim ◽  
Jagannath Mondal ◽  
Pushpita Ghosh

Self-propelled bacteria can exhibit a large variety of non-equilibrium self-organized phenomena. Swarming is one such fascinating dynamical scenario where a number of motile individuals group into dynamical clusters and move...

2021 ◽  
Author(s):  
Palash Bera ◽  
Abdul Wasim ◽  
Jagannath Mondal ◽  
Pushpita Ghosh

AbstractSelf-propelled bacteria can exhibit a large variety of non-equilibrium self-organized phenomena. Swarming is one such fascinating dynamical scenario where a number of motile individuals grouped into clusters and move in synchronized flows and vortices. While precedent investigations in rod-like particles confirm that increased aspect-ratio promotes alignment and order, recent experimental studies in bacteria Bacillus subtilis show a non-monotonic dependence of cell-aspect ratio on their swarming motion. Here, by computer simulations of an agent-based model of selfpropelled, mechanically interacting, rod-shaped bacteria in overdamped condition, we explore the collective dynamics of bacterial swarm subjected to a variation of cell-aspect ratio. When modeled with an identical self-propulsion speed across a diverse range of cell aspect ratio, simulations demonstrate that both shorter and longer bacteria exhibit slow dynamics whereas the fastest speed is obtained at an intermediate aspect ratio. Our investigation highlights that the origin of this observed non-monotonic trend of bacterial speed and vorticity with cell-aspect ratio is rooted in the cell-size dependence of motility force. The swarming features remain robust for a wide range of surface density of the cells, whereas asymmetry in friction attributes a distinct effect. Our analysis identifies that at an intermediate aspect ratio, an optimum cell size and motility force promote alignment, which reinforces the mechanical interactions among neighboring cells leading to the overall fastest motion. Mechanistic underpinning of the collective motions reveals that it is a joint venture of the short-range repulsive and the size-dependent motility forces, which determines the characteristics of swarming.


2001 ◽  
Vol 707 ◽  
Author(s):  
Harumasa Yoshida ◽  
Tatsuhiro Urushido ◽  
Hideto Miyake ◽  
Kazumasa Hiramtsu

ABSTRACTWe have successfully fabricated self-organized GaN nanotips by reactive ion etching using chlorine plasma, and have revealed the formation mechanism. Nanotips with a high density and a high aspect ratio have been formed after the etching. We deduce from X-ray photoelectron spectroscopy (XPS) analysis that the nanotip formation is attributed to nanometer-scale masks of SiO2 on GaN. The structures calculated by Monte Carlo simulation of our formation mechanism are very similar to the experimental nanotip structures.


1991 ◽  
Vol 147 ◽  
pp. 197-204
Author(s):  
J.P. Chièze ◽  
C. de Boisanger

The dynamics of the cold atomic and molecular gas, on which we focus here, is strongly affected by non equilibrium heating and cooling processes. We give two different examples, in which the breaking of the thermal balance is due respectively to variations of the incident ultraviolet radiation flux, and non equilibrium abundances of H2 molecules in molecular clouds envelopes. Fluctuations of the ultraviolet radiation flux in clumpy molecular cloud envelopes result in the formation or the destruction of dense regions. Large density contrasts, greater than one order of magnitude, are easily achieved in cloud regions of moderate visual extinction. Condensation or expansion develop on quite short time scales, of the order of a few tenth of million year, and induce collective motions which can feed turbulence.Another example of the importance of out of equilibrium thermochemical processes is furnished by the study of the H — H2 transition layers in molecular clouds envelopes. They turn out to be unstable against convection-like motions, driven by the energy released by H2 photodestruction. The gas velocities involved in these motions are, again, typical of the observed turbulent velocity in clouds envelopes.


2008 ◽  
Vol 46 (12) ◽  
pp. 1280-1289 ◽  
Author(s):  
Jie Kong ◽  
Kai-Leung Yung ◽  
Yan Xu ◽  
Lan He ◽  
K. H. Lau ◽  
...  

2001 ◽  
Vol 693 ◽  
Author(s):  
Harumasa Yoshida ◽  
Tatsuhiro Urushido ◽  
Hideto Miyake ◽  
Kazumasa Hiramtsu

AbstractWe have successfully fabricated self-organized GaN nanotips by reactive ion etching using chlorine plasma, and have revealed the formation mechanism. Nanotips with a high density and a high aspect ratio have been formed after the etching. We deduce from X-ray photoelectron spectroscopy (XPS) analysis that the nanotip formation is attributed to nanometer-scale masks of SiO2 on GaN. The structures calculated by Monte Carlo simulation of our formation mechanism are very similar to the experimental nanotip structures.


1997 ◽  
Vol 82 (2) ◽  
pp. 566-571 ◽  
Author(s):  
Gyeong S. Hwang ◽  
Konstantinos P. Giapis

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