New tetranucleotide microsatellites for fine-scale discrimination among endangered chinook salmon (Oncorhynchus tshawytscha)

2003 ◽  
Vol 3 (3) ◽  
pp. 376-379 ◽  
Author(s):  
Carolyn Greig ◽  
David P. Jacobson ◽  
Michael A. Banks
Keyword(s):  
Chinook Salmon ◽  
Oncorhynchus Tshawytscha ◽  
Fine Scale ◽  
Tetranucleotide Microsatellites

scholarly journals Making progress on bycatch avoidance in the ocean salmon fishery using a transdisciplinary approach

2016 ◽  
Vol 73 (9) ◽  
pp. 2380-2394 ◽  
Author(s):  
Saskia A. Otto ◽  
Sarah Simons ◽  
Joshua S. Stoll ◽  
Peter Lawson
Keyword(s):  
Pacific Northwest ◽  
Chinook Salmon ◽  
Oncorhynchus Tshawytscha ◽  
Fishing Effort ◽  
Fine Scale ◽  
Transdisciplinary Approach ◽  
Stakeholder Collaboration ◽  
Study Region ◽  
Fish Stocks ◽  
Spatio Temporal

Abstract Transdisciplinary research that crosses disciplinary boundaries and includes stakeholder collaboration is increasingly being used to address pressing and complex socio-ecological challenges in the Anthropocene. In fisheries, we see transdisciplinary approaches being employed to address a range of challenges, including bycatch where fine-scale data are collected by fishers to help advance spatial approaches in which fishing effort is shifted away from bycatch hotspots. However, the spatio-temporal overlap of morphologically undistinguishable fish stocks, some of which are depleted, is a major concern for some fisheries, including the Pacific Northwest troll Chinook salmon (Oncorhynchus tshawytscha) fishery. In this study, we develop and evaluate a transdisciplinary approach to avoid bycatch in the commercial Chinook salmon troll fishery off northern and central Oregon. Based on a unique genetic dataset collected by fishers, fine-scale patterns of stock distribution and spatial stock overlap were assessed. Two hotspots of weak Klamath stock in the study region were identified and related to bathymetry. Results were then fed into a simple bioeconomic model to evaluate costs and benefits of reallocating effort under two scenarios of allowable catch of a weak stock (Klamath). The scenarios demonstrate that effort reallocation could lead to a reduction in Klamath catch as well as to increases in net profit, but outcomes depend on the distance from the fleets' home port to the new fishing area. The output of the model at its current stage should be regarded strategically, providing a qualitative understanding of the types of best fleet strategies. Despite some challenges in transdisciplinarity discussed in this study and the present limitations to incorporate fine-scale changes of Chinook salmon stock distributions in management regulations, we contend that this approach to research has the potential to lead to improved management outcomes.

Systematic hexamitid (Protozoa: Diplomonadida) Infection in seawater pen-reared Chinook salmon Oncorhynchus tshawytscha

1992 ◽  
Vol 14 ◽  
pp. 81-89 ◽  
Author(s):  
ML Kent ◽  
J Ellis ◽  
JW Fournie ◽  
SC Dawe ◽  
JW Bagshaw ◽  
...  
Keyword(s):  
Chinook Salmon ◽  
Oncorhynchus Tshawytscha

Fine-scale taxonomic and temporal variability in the energy density of invertebrate prey of juvenile Chinook salmon Oncorhynchus tshawytscha

2020 ◽  
Vol 655 ◽  
pp. 185-198
Author(s):  
J Weil ◽  
WDP Duguid ◽  
F Juanes
Keyword(s):  
Energy Density ◽  
Chinook Salmon ◽  
Temporal Variability ◽  
Energy Content ◽  
Single Point ◽  
Single Species ◽  
Fine Scale ◽  
Temporal Differences ◽  
Juvenile Chinook Salmon ◽  
Juvenile Chinook

Variation in the energy content of prey can drive the diet choice, growth and ultimate survival of consumers. In Pacific salmon species, obtaining sufficient energy for rapid growth during early marine residence is hypothesized to reduce the risk of size-selective mortality. In order to determine the energetic benefit of feeding choices for individuals, accurate estimates of energy density (ED) across prey groups are required. Frequently, a single species is assumed to be representative of a larger taxonomic group or related species. Further, single-point estimates are often assumed to be representative of a group across seasons, despite temporal variability. To test the validity of these practices, we sampled zooplankton prey of juvenile Chinook salmon to investigate fine-scale taxonomic and temporal differences in ED. Using a recently developed model to estimate the ED of organisms using percent ash-free dry weight, we compared energy content of several groups that are typically grouped together in growth studies. Decapod megalopae were more energy rich than zoeae and showed family-level variability in ED. Amphipods showed significant species-level variability in ED. Temporal differences were observed, but patterns were not consistent among groups. Bioenergetic model simulations showed that growth rate of juvenile Chinook salmon was almost identical when prey ED values were calculated on a fine scale or on a taxon-averaged coarse scale. However, single-species representative calculations of prey ED yielded highly variable output in growth depending on the representative species used. These results suggest that the latter approach may yield significantly biased results.

scholarly journals Managed Wetlands Can Benefit Juvenile Chinook Salmon in a Tidal Marsh

2021 ◽  
Author(s):  
Nicole M. Aha ◽  
Peter B. Moyle ◽  
Nann A. Fangue ◽  
Andrew L. Rypel ◽  
John R. Durand
Keyword(s):  
San Francisco ◽  
Growth Rates ◽  
Chinook Salmon ◽  
Oncorhynchus Tshawytscha ◽  
Nursery Habitat ◽  
San Francisco Estuary ◽  
Rice Fields ◽  
Fish Growth ◽  
Juvenile Chinook Salmon ◽  
Juvenile Chinook

AbstractLoss of estuarine and coastal habitats worldwide has reduced nursery habitat and function for diverse fishes, including juvenile Chinook salmon (Oncorhynchus tshawytscha). Underutilized off-channel habitats such as flooded rice fields and managed ponds present opportunities for improving rearing conditions and increasing habitat diversity along migratory corridors. While experiments in rice fields have shown enhanced growth rates of juvenile fishes, managed ponds are less studied. To evaluate the potential of these ponds as a nursery habitat, juvenile Chinook salmon (~ 2.8 g, 63 mm FL) were reared in cages in four contrasting locations within Suisun Marsh, a large wetland in the San Francisco Estuary. The locations included a natural tidal slough, a leveed tidal slough, and the inlet and outlet of a tidally muted managed pond established for waterfowl hunting. Fish growth rates differed significantly among locations, with the fastest growth occurring near the outlet in the managed pond. High zooplankton biomass at the managed pond outlet was the best correlate of salmon growth. Water temperatures in the managed pond were also cooler and less variable compared to sloughs, reducing thermal stress. The stress of low dissolved oxygen concentrations within the managed pond was likely mediated by high concentrations of zooplankton and favorable temperatures. Our findings suggest that muted tidal habitats in the San Francisco Estuary and elsewhere could be managed to promote growth and survival of juvenile salmon and other native fishes.

Analysis of straying variation in Alaskan hatchery chinook salmon (Oncorhynchus tshawytscha) following transplantation

1999 ◽  
Vol 56 (4) ◽  
pp. 578-589 ◽  
Author(s):  
Jeffrey J Hard ◽  
William R Heard
Keyword(s):  
British Columbia ◽  
Chinook Salmon ◽  
Oncorhynchus Tshawytscha ◽  
Release Site ◽  
Substantial Variation

In 1976 chinook salmon (Oncorhynchus tshawytscha) gametes from the Chickamin and Unuk rivers in southeastern Alaska were transplanted 250 km to establish hatchery runs at Little Port Walter (LPW), Baranof Island. From 1977 to 1989, 1 862 058 marked smolts from 12 broods were released from LPW. Homing and straying were estimated from adult recoveries at 25 locations in Alaska and British Columbia between 1981 and 1989. Of 22 198 LPW fish recovered over this period, 21 934 (98.8%) were collected at LPW. Of 264 fish recovered elsewhere, 38.3% were within 7 km of LPW; 64.4% were within 25 km of LPW. No LPW fish were recovered from the ancestral rivers, but nine fish were recovered from rivers supporting wild chinook salmon. Straying declined with distance from the release site but varied between hatcheries and streams. Straying declined with increasing age and run size. Straying was similar between the populations but varied among broods, and analysis of straying in experimental groups provided evidence for a heritable component. Males strayed more often than females. Population, gender, run size, and recovery age interacted to produce substantial variation in straying, indicating that run composition can produce complex straying responses.

Route selection in a large river during the homing migration of Chinook salmon (Oncorhynchus tshawytscha)

2006 ◽  
Vol 63 (8) ◽  
pp. 1752-1762 ◽  
Author(s):  
Matthew L Keefer ◽  
Christopher C Caudill ◽  
Christopher A Peery ◽  
Theodore C Bjornn
Keyword(s):  
Chinook Salmon ◽  
Oncorhynchus Tshawytscha ◽  
Columbia River ◽  
Large River ◽  
Migration Route ◽  
Route Selection ◽  
Behavioral Differences ◽  
Long Distance ◽  
Selection Decisions ◽  
Efficient Route

Upstream-migrating adult salmon must make a series of correct navigation and route-selection decisions to successfully locate natal streams. In this field study, we examined factors influencing migration route selections early in the migration of 4361 radio-tagged adult Chinook salmon (Oncorhynchus tshawytscha) as they moved upstream past dams in the large (~1 km wide) Columbia River. Substantial behavioral differences were observed among 11 conspecific populations, despite largely concurrent migrations. At dams, Chinook salmon generally preferred ladder passage routes adjacent to the shoreline where their natal tributaries entered, and the degree of preference increased as salmon proximity to natal tributaries increased. Columbia River discharge also influenced route choices, explaining some route selection variability. We suggest that salmon detect lateral gradients in orientation cues across the Columbia River channel that are entrained within tributary plumes and that these gradients in cues can persist downstream for tens to hundreds of kilometres. Detection of tributary plumes in large river systems, using olfactory or other navigation cues, may facilitate efficient route selection and optimize energy conservation by long-distance migrants.

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