Reef fish at a remote tropical island (Principe Island, Gulf of Guinea): disentangling taxonomic, functional and phylogenetic diversity patterns with depth

2018 ◽  
Vol 69 (3) ◽  
pp. 395 ◽  
Author(s):  
F. Tuya ◽  
A. Herrero-Barrencua ◽  
N. E. Bosch ◽  
A. D. Abreu ◽  
R. Haroun
Keyword(s):  
Reef Fish ◽  
Functional Diversity ◽  
Functional Traits ◽  
Phylogenetic Diversity ◽  
Fish Assemblages ◽  
Taxonomic Diversity ◽  
Species Traits ◽  
Gulf Of Guinea ◽  
Tropical Island ◽  
Functional And Phylogenetic Diversity

The ecology of reef fish varies with depth, although patterns in diversity remain largely undescribed, in particular the complementarity of their taxonomic, functional and phylogenetic facets. In the present study we investigated patterns of taxonomic, functional and phylogenetic diversity of fish on 21 reefs, at depths ranging from 3 to 31m, at Príncipe Island (Gulf of Guinea). Taxonomic and functional diversity decreased monotonically with depth; the pattern was less accentuated for phylogenetic diversity. Functional diversity was saturated at high levels of taxonomic diversity, reflecting redundancy in species traits, particularly at the shallower reefs. Functional diversity increased linearly with phylogenetic diversity; thus, increasing niche availability seems to translate into a larger diversity of phylogenies. Dissimilarities in the structure and composition of fish assemblages among reefs were correlated with differences in depth, including a progressive turnover in species. Depth affected the functional traits of nearshore reef fish. Trophic breadth decreased with depth; carnivores and planktivores increased with depth, whereas herbivores decreased with depth. Small-sized fusiform fish dominated on the shallowest reefs. In summary, the present study demonstrated decays in biodiversity, from different perspectives, of reef fish with depth, which are connected with shifts in fish traits.

scholarly journals Is Phylogeny More Useful than Functional Traits for Assessing Diversity Patterns Under Community Assembly Processes?

Forests ◽  
2019 ◽  
Vol 10 (12) ◽  
pp. 1159 ◽  
Author(s):  
Jinshi Xu ◽  
Han Dang ◽  
Mao Wang ◽  
Yongfu Chai ◽  
Yaoxin Guo ◽  
...  
Keyword(s):  
Functional Diversity ◽  
Functional Traits ◽  
Community Assembly ◽  
Phylogenetic Diversity ◽  
Environmental Changes ◽  
Taxonomic Diversity ◽  
Elevational Gradient ◽  
Functional Trait ◽  
Β Diversity ◽  
Α Diversity

Phylogenetic and functional diversities and their relationship are important for understanding community assembly, which relates to forest sustainability. Thus, both diversities have been used in ecological studies evaluating community responses to environmental changes. However, it is unclear whether these diversity measures can uncover the actual community assembly processes. Herein, we examined their utility to assess such assembly processes by analyzing similarities in phylogenetic, functional, and taxonomic α- and β-diversities along an elevational gradient. Additionally, we examined the relationships among environment, phylogeny, and functional traits within the community. Based on our results, we evaluated whether phylogenetic or functional diversity could better reveal the actual community assembly processes. We found that taxonomic, phylogenetic, and functional α-diversities were correlated with one another. Although the functional α-diversity showed a linear correlation with the elevational gradient, taxonomic and phylogenetic α-diversities showed unimodal patterns. Both phylogenetic and functional β-diversities correlated with taxonomic β-diversity, but there was no significant relationship between the former. Overall, our results evidenced that phylogenetic diversity and taxonomic diversity showed similar patterns, whereas functional diversity showed a relatively independent pattern, which may be due to limitations in the functional trait dimensions used in the present study. Although it is difficult to unravel whether the environment shapes phylogeny or functional traits within a community, phylogenetic diversity is a good proxy for assessing the assembly processes, whereas functional diversity may improve knowledge on the community by maximizing information about the functional trait dimensions.

scholarly journals Functional diversity of Himalayan bat communities declines at high elevation without the loss of phylogenetic diversity

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Rohit Chakravarty ◽  
Ram Mohan ◽  
Christian C. Voigt ◽  
Anand Krishnan ◽  
Viktoriia Radchuk
Keyword(s):  
Species Richness ◽  
Functional Diversity ◽  
Phylogenetic Diversity ◽  
Environmental Filtering ◽  
Taxonomic Diversity ◽  
High Elevation ◽  
Elevational Gradients ◽  
Functional Richness ◽  
Functional Dispersion ◽  
Functional And Phylogenetic Diversity

AbstractSpecies richness exhibits well-known patterns across elevational gradients in various taxa, but represents only one aspect of quantifying biodiversity patterns. Functional and phylogenetic diversity have received much less attention, particularly for vertebrate taxa. There is still a limited understanding of how functional, phylogenetic and taxonomic diversity change in concert across large gradients of elevation. Here, we focused on the Himalaya—representing the largest elevational gradients in the world—to investigate the patterns of taxonomic, functional and phylogenetic diversity in a bat assemblage. Combining field data on species occurrence, relative abundance, and functional traits with measures of phylogenetic diversity, we found that bat species richness and functional diversity declined at high elevation but phylogenetic diversity remained unchanged. At the lowest elevation, we observed low functional dispersion despite high species and functional richness, suggesting a niche packing mechanism. The decline in functional richness, dispersion, and divergence at the highest elevation is consistent with patterns observed due to environmental filtering. These patterns are driven by the absence of rhinolophid bats, four congeners with extreme trait values. Our data, some of the first on mammals from the Himalayan region, suggest that in bat assemblages with relatively high species diversity, phylogenetic diversity may not be a substitute to measure functional diversity.

scholarly journals Functional Diversity: An Epistemic Roadmap

BioScience ◽  
2019 ◽  
Vol 69 (10) ◽  
pp. 800-811 ◽  
Author(s):  
Christophe Malaterre ◽  
Antoine C Dussault ◽  
Sophia Rousseau-Mermans ◽  
Gillian Barker ◽  
Beatrix E Beisner ◽  
...  
Keyword(s):  
Species Diversity ◽  
Functional Diversity ◽  
Functional Traits ◽  
Management Strategies ◽  
Taxonomic Diversity ◽  
Ecological Management ◽  
Diversity Studies

Abstract Functional diversity holds the promise of understanding ecosystems in ways unattainable by taxonomic diversity studies. Underlying this promise is the intuition that investigating the diversity of what organisms actually do (i.e., their functional traits) within ecosystems will generate more reliable insights into the ways these ecosystems behave, compared to considering only species diversity. But this promise also rests on several conceptual and methodological (i.e., epistemic) assumptions that cut across various theories and domains of ecology. These assumptions should be clearly addressed, notably for the sake of an effective comparison and integration across domains, and for assessing whether or not to use functional diversity approaches for developing ecological management strategies. The objective of this contribution is to identify and critically analyze the most salient of these assumptions. To this aim, we provide an epistemic roadmap that pinpoints these assumptions along a set of historical, conceptual, empirical, theoretical, and normative dimensions.

scholarly journals Effects of management outweigh effects of plant diversity on restored animal communities in tallgrass prairies

2021 ◽  
Vol 118 (5) ◽  
pp. e2015421118
Author(s):  
Peter W. Guiden ◽  
Nicholas A. Barber ◽  
Ryan Blackburn ◽  
Anna Farrell ◽  
Jessica Fliginger ◽  
...  
Keyword(s):  
Plant Diversity ◽  
Tallgrass Prairie ◽  
Phylogenetic Diversity ◽  
Restoration Ecology ◽  
Taxonomic Diversity ◽  
Negative Effects ◽  
Tallgrass Prairies ◽  
Degraded Ecosystems ◽  
Functional And Phylogenetic Diversity ◽  
Animal Communities

A primary goal of ecological restoration is to increase biodiversity in degraded ecosystems. However, the success of restoration ecology is often assessed by measuring the response of a single functional group or trophic level to restoration, without considering how restoration affects multitrophic interactions that shape biodiversity. An ecosystem-wide approach to restoration is therefore necessary to understand whether animal responses to restoration, such as changes in biodiversity, are facilitated by changes in plant communities (plant-driven effects) or disturbance and succession resulting from restoration activities (management-driven effects). Furthermore, most restoration ecology studies focus on how restoration alters taxonomic diversity, while less attention is paid to the response of functional and phylogenetic diversity in restored ecosystems. Here, we compared the strength of plant-driven and management-driven effects of restoration on four animal communities (ground beetles, dung beetles, snakes, and small mammals) in a chronosequence of restored tallgrass prairie, where sites varied in management history (prescribed fire and bison reintroduction). Our analyses indicate that management-driven effects on animal communities were six-times stronger than effects mediated through changes in plant biodiversity. Additionally, we demonstrate that restoration can simultaneously have positive and negative effects on biodiversity through different pathways, which may help reconcile variation in restoration outcomes. Furthermore, animal taxonomic and phylogenetic diversity responded differently to restoration, suggesting that restoration plans might benefit from considering multiple dimensions of animal biodiversity. We conclude that metrics of plant diversity alone may not be adequate to assess the success of restoration in reassembling functional ecosystems.

scholarly journals Iberian Protected Areas Capture Regional Functional, Phylogenetic and Taxonomic Diversity of Most Tetrapod Groups

2021 ◽  
Vol 9 ◽  
Author(s):  
Sonia Llorente-Culebras ◽  
Rafael Molina-Venegas ◽  
A. Márcia Barbosa ◽  
Silvia B. Carvalho ◽  
Miguel Á. Rodríguez ◽  
...  
Keyword(s):  
Protected Areas ◽  
National Parks ◽  
Phylogenetic Diversity ◽  
Land Use Changes ◽  
Taxonomic Diversity ◽  
Anthropogenic Pressures ◽  
Breeding Bird ◽  
Habitat Specificity ◽  
Functional And Phylogenetic Diversity ◽  
Species Roles

Protected areas (PAs) have been created with the purpose of preserving biodiversity, acting as refuges from anthropogenic pressures. Traditionally, PAs have been designed and managed to represent mainly taxonomic diversity, ignoring other diversity facets such as its functional and phylogenetic components. Yet, functional and phylogenetic diversity are, respectively, connected with species’ roles on ecosystems and evolutionary history held within communities. Here, we focused on the amphibian, reptile, resident breeding bird, and non-flying mammal faunas of the national and natural parks of the Iberian Peninsula, to evaluate whether these PAs are adequately representing regional functional, phylogenetic, and taxonomic diversity of each group. Specifically, we computed functional and phylogenetic diversity within each PA, and then compared those values to the ones obtained from a random assembly of species from the regional pool, that was defined as the region encompassing the PA and a neighboring area of 50 km beyond its boundary. We also calculated the proportion of species in each regional pool that were present within the PAs. In general, the functional and phylogenetic diversity of amphibians, reptiles and non-flying mammals found within PAs did not differ significantly from random expectations generated from the species pertaining to the regional pool, although a few PAs showed a higher diversity. In contrast, resident breeding birds presented lower functional and phylogenetic diversity than expected by chance in many of the PAs, which could relate to climatic variables and the habitat specificity of some species. The proportion of species from the regional pools that are present in the PAs was high for amphibians, reptiles and mammals, and slightly lower for birds. These results suggest that the Iberian natural and national parks are effectively capturing the functional, phylogenetic and taxonomic diversity of most tetrapod assemblages present at the regional level. Future studies should identify priority areas to expand the representation of these biodiversity components, and assess potential effects of climate and land-use changes on current patterns.

Continuous forest has greater taxonomic, functional and phylogenetic plant diversity than an adjacent naturally fragmented forest

2014 ◽  
Vol 30 (4) ◽  
pp. 323-333 ◽  
Author(s):  
Miguel A. Munguía-Rosas ◽  
Selmy G. Jurado-Dzib ◽  
Candy R. Mezeta-Cob ◽  
Salvador Montiel ◽  
Armando Rojas ◽  
...  
Keyword(s):  
Tropical Forest ◽  
Forest Fragmentation ◽  
Plant Diversity ◽  
Phylogenetic Diversity ◽  
Taxonomic Diversity ◽  
Evergreen Forest ◽  
Forest Fragments ◽  
Fragmented Forest ◽  
Continuous Forest ◽  
Functional And Phylogenetic Diversity

Abstract:Several studies have evaluated the short-term effects of tropical forest fragmentation on plant taxonomic diversity, while only a few have evaluated its effects on functional or phylogenetic diversity. To our knowledge no study has looked at the long-term consequences of tropical forest fragmentation on the three main components of plant diversity simultaneously: taxonomic, functional and phylogenetic diversity. We sampled the vascular flora using belt transects (50 × 4 m) in a continuous tropical semi-evergreen forest (16 transects) and in an adjacent naturally fragmented forest (fragments of 1.7-My-old semi-evergreen forest immersed in a mangrove/sedge matrix) (18 transects), and compared their taxonomic, functional and phylogenetic plant diversity. There were 36 species in the continuous forest and 28 in the fragmented forest. Continuous forest was taxonomically more diverse (25%) than the fragmented forest. All functional diversity metrics were greater (6–33%) in the continuous than in the fragmented forest. Phylogenetic diversity was 19% greater and phylogenetically more overdispersed in the continuous forest than in the fragmented forest. The results suggest that in the fragmented forest not only is taxonomic plant diversity lower, but functional and phylogenetic diversity are as well. The negative effects of forest fragmentation on plant diversity seem to be chronic.

scholarly journals Patch size and vegetation structure drive changes to mixed-species flock diversity and composition across a gradient of fragment sizes in the Western Andes of Colombia

The Condor ◽  
2020 ◽  
Vol 122 (2) ◽  
Author(s):  
Harrison H Jones ◽  
Scott K Robinson
Keyword(s):  
Species Richness ◽  
Functional Diversity ◽  
Edge Effects ◽  
Vegetation Structure ◽  
Phylogenetic Diversity ◽  
Patch Size ◽  
Forest Edge ◽  
Mixed Species ◽  
Functional And Phylogenetic Diversity ◽  
Diversity Metrics

Abstract Forest fragmentation is a leading driver of biodiversity loss, yet its effects on positive species interactions remain poorly known. We examined the effects of fragmentation on mixed-species bird flocks in the Western Andes of Colombia. Using 500-m transect surveys (n = 14 transects), we sampled flocks in 8 fragments (range: 10–173 ha) and an unfragmented reference site within the same altitudinal band (1,900–2,200 m.a.s.l.) and matrix type (cattle pasture). We evaluated the relative contributions of 9 predictor variables, including patch size, distance from edge, and selective aspects of vegetation structure on the composition, size, species richness, functional diversity, and phylogenetic diversity of flocks. We found effects of both patch size and vegetation structure on flock species richness, size, and functional diversity, but no support for edge effects. Generally, flock richness and size responded differently to fragmentation than did functional and phylogenetic diversity metrics. Both flock size and richness increased with patch size, but this variable had no effect on functional and phylogenetic diversity. Flock richness and size increased in high-canopy forests with greater foliage height diversity, whereas unlogged, old-growth primary forests with large-diameter trees had lower flock richness and size, but significantly greater functional diversity. Phylogenetic diversity was not affected by patch size, edge effects, or vegetation structure. We found differences in flock composition in response to fragmentation. Richness of Furnariidae in flocks increased with increasing distance from edge and foliage height diversity, whereas that of Thraupidae and boreal migrant species increased in early successional and forest edge flocks, respectively. All flock diversity metrics differed significantly seasonally, with smaller, less diverse flocks observed in January–March than in June–August. Flocking behavior persisted in 10-ha fragments, likely because Andean flocks are “open membership” in nature, but there was extensive species turnover as forest edge and generalist species replaced forest-interior species in smaller fragments.

scholarly journals Use of functional traits to assess changes in stream fish assemblages across a habitat gradient

2016 ◽  
Vol 14 (1) ◽  
Author(s):  
Mariela Domiciano Ribeiro ◽  
Fabrício Barreto Teresa ◽  
Lilian Casatti
Keyword(s):  
Functional Traits ◽  
Environmental Conditions ◽  
Habitat Structure ◽  
Trophic Ecology ◽  
Fish Assemblages ◽  
Habitat Degradation ◽  
Species Traits ◽  
Habitat Characteristics ◽  
Physical Habitat ◽  
Habitat Gradient

Abstract Functional traits are important for understanding the links between species occurrence and environmental conditions. Identifying these links makes it possible to predict changes in species composition within communities under specific environmental conditions. We used functional traits related to habitat use and trophic ecology in order to assess the changes in fish community composition between streams with varying habitat structure. The relationship between the species traits and habitat characteristics was analyzed using an RLQ ordination analysis. Although species were widely distributed in habitats with different structures, physical conditions did favor some species based on their functional characteristics. Eight functional traits were found to be associated with stream habitat structure, allowing us to identify traits that may predict the susceptibility of fish species to physical habitat degradation.

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