scholarly journals Molecular phylogeny reveals the true colours of Myeloconidaceae (Ascomycota: Ostropales)

2014 ◽  
Vol 27 (1) ◽  
pp. 38 ◽  
Author(s):  
Matthew P. Nelsen ◽  
Robert Lücking ◽  
Carrie J. Andrew ◽  
André Aptroot ◽  
Marcela E. S. Cáceres ◽  
...  
Keyword(s):  
Molecular Phylogeny ◽  
Species Concept ◽  
Large Subunit ◽  
Molecular Data ◽  
Small Subunit ◽  
Separate Genus ◽  
The Family ◽  
Single Genus ◽  
Ascospore Septation ◽  
Large Subunit Rdna

The lichen-forming fungal family Myeloconidaceae, with the single genus Myeloconis, has been suggested to share affinities with Porinaceae (Lecanoromycetes: Ostropales). We examined its position relative to this family by using molecular data from the mitochondrial small-subunit and nuclear large-subunit rDNA. Our results revealed that Myeloconis forms a monophyletic group nested within Porinaceae, closely related to Porina farinosa. Neither Porina s.str. nor Clathroporina sensu Harris form monophyletic groups; instead, two strongly supported clades were recovered, which differ in ascospore septation (septate v. muriform), with the clade producing muriform ascospores including Myeloconis. We therefore reduce Myeloconidaceae to synonymy with Porinaceae; however, because generic delimitations within Porinaceae remain unclear, we retain Myeloconis as a separate genus within the family. The species concept currently used in the genus, based largely on secondary metabolites and ascospore measurements, is supported by the phylogeny.

Revisiting the phylogeny of Ocellularieae, the second largest tribe within Graphidaceae (lichenized Ascomycota: Ostropales)

Phytotaxa ◽  
2014 ◽  
Vol 189 (1) ◽  
pp. 52 ◽  
Author(s):  
Ekaphan Kraichak ◽  
Sittiporn Parnmen ◽  
Robert Lücking ◽  
EIMY RIVAS PLATA ◽  
André Aptroot ◽  
...  
Keyword(s):  
Molecular Phylogeny ◽  
Rna Polymerase ◽  
Rna Polymerase Ii ◽  
Large Subunit ◽  
Small Subunit ◽  
New Combinations ◽  
New Name ◽  
Small Subunit Rdna ◽  
Large Subunit Rdna ◽  
First Time

We present an updated 3-locus molecular phylogeny of tribe Ocellularieae, the second largest tribe within subfamily Graphidoideae in the Graphidaceae. Adding 165 newly generated sequences from the mitochondrial small subunit rDNA (mtSSU), the nuclear large subunit rDNA (nuLSU), and the second largest subunit of the DNA-directed RNA polymerase II (RPB2), we currently distinguish 218 species among the sequenced material, including the outgroup. This corresponds to almost half the species at this point recognized within this tribe. The newly generated sequences include 23 newly described species and one newly described genus published elsewhere in this volume. For the first time, Sarcographina cyclospora Müll. Arg., in spite of its distinctly lirellate ascomata, is shown to belong in tribe Ocellularieae, as strongly supported sister to Ocellularia inturgescens (Müll. Arg.) Mangold. The following six new combinations are proposed: Melanotrema lynceodes (Nyl.) Rivas Plata, Lücking & Lumbsch, Ocellularia curranii (Vain.) Kraichak, Lücking & Lumbsch, O. khasiana (Patw. & Nagarkar) Kraichak, Lücking & Lumbsch, O. cinerea (Müll. Arg.) Kraichak, Lücking & Lumbsch, O. erodens (R. C. Harris) Kraichak, Lücking & Lumbsch, and O. laeviuscula (Nyl) Kraichak, Lücking & Lumbsch. Further, the new name Ocellularia hernandeziana Kraichak, Lücking & Lumbsch is introduced for Myriotrema ecorticatum. The nomenclatural status of the name Ocellularia microstoma is clarified.

scholarly journals A Novel Parasitoid of Marine Dinoflagellates, Pararosarium dinoexitiosum gen. et sp. nov. (Perkinsozoa, Alveolata), Showing Characteristic Beaded Sporocytes

2021 ◽  
Vol 12 ◽  
Author(s):  
Boo Seong Jeon ◽  
Myung Gil Park
Keyword(s):  
Dna Sequences ◽  
Phylogenetic Analyses ◽  
Large Subunit ◽  
Molecular Data ◽  
Small Subunit ◽  
New Family ◽  
The Family ◽  
Marine Dinoflagellates ◽  
Developmental Characteristics ◽  
Intensive Sampling

The phylum Perkinsozoa is known as an exclusively parasitic group within alveolates and is widely distributed in various aquatic environments from marine to freshwater environments. Nonetheless, their morphology, life cycle, the identity of the host, and physiological characteristics remain still poorly understood. During intensive sampling along the west coast of Korea in October and November 2017, a new parasitoid, which shares several characteristics with the extant families Perkinsidae and Parviluciferaceae, was discovered and three strains of the new parasitoid were successfully established in cultures. Cross-infection experiments showed that among the examined planktonic groups, only dinoflagellates were susceptible to the new parasitoid, with infections observed in species belonging to eight genera. Even though the new parasitoid shared many morphological and developmental characteristics with other Perkinsozoan parasites, it differed from them by its densely packed trophocyte structure without a large vacuole or hyaline material during the growth stage. These characteristics are common among Parviluciferaceae members. Furthermore, through palintomic extracellular sporogenesis, it produced characteristic interconnected sporocytes resembling a string of beads. Phylogenetic analyses based on the small subunit and large subunit ribosomal DNA sequences revealed that the new parasitoid was distantly related to the family Parviluciferaceae and was more closely related to the families Perkinsidae and Xcellidae. Morphological, ultrastructural, and molecular data on the new parasitoid raised the need to erect a new family, i.e., Pararosariidae, within the phylum Perkinsozoa with Pararosarium dinoexitiosum gen. et sp. nov. as the type species. The isolation and establishment in culture of the new parasitoid outside the family Parviluciferaceae in the present study would contribute to the better understanding of the diversity of Perkinsozoan parasites and provide useful material for comparisons to other parasite species in the further study.

Molecular phylogeny resolves a taxonomic misunderstanding and places Geisleria close to Absconditella s. str. (Ostropales: Stictidaceae)

2014 ◽  
Vol 46 (1) ◽  
pp. 115-128 ◽  
Author(s):  
André APTROOT ◽  
Sittiporn PARNMEN ◽  
Robert LÜCKING ◽  
Elisabeth BALOCH ◽  
Patricia JUNGBLUTH ◽  
...  
Keyword(s):  
Molecular Phylogeny ◽  
Type Species ◽  
Sequence Data ◽  
Large Subunit ◽  
Parallel Evolution ◽  
Small Subunit ◽  
Phylogenetic Position ◽  
Pioneer Species ◽  
Dry Conditions ◽  
Large Subunit Rdna

AbstractThe phylogenetic position of the genus Geisleria and its type species G. sychnogonioides was reconstructed using sequence data of the mitochondrial small subunit (mtSSU), the nuclear large subunit rDNA (nuLSU) and the first subunit of the RNA polymerase (RPB1). The species, previously classified in Verrucariaceae (Eurotiomycetes) and Strigulaceae (Dothideomycetes), is sister to the type of the genus Absconditella, A. sphagnorum, and nested within the genera Absconditella and Cryptodiscus combined (which also includes the lichenized Bryophagus). At first glance it appears to be a further example of parallel evolution of perithecioid ascomata within Stictidaceae (Lecanoromycetes: Ostropales), besides Ostropa and Robergea, adding to the growing list of perithecioid forms nested within apothecioid lineages in Ostropomycetidae, and specifically Ostropales, with other examples known from Graphidaceae (several genera), Gyalectaceae (Belonia), and Porinaceae. However, revision of type material collected by Nitschke revealed that the species actually develops typical apothecia with a narrowly exposed disc. We conclude that Geisleria sychnogonoides was erroneously considered a pyrenocarpous taxon, because in dry conditions the apothecia are closed and not recognizable as such. The species usually grows on unstable soil and therefore often only develops young, more or less closed ascomata (yet with mature ascospores), and has also been confused with the superficially similar Belonia incarnata, in which the ascomata remain closed even when mature. Geisleriasychnogonioides has so far only been known as a rarely reported pioneer species from loamy soils in Europe and North America. Here it is reported to occur abundantly on lateritic soils in subtropical Brazil, suggesting that it is cosmopolitan and possibly common, but much overlooked.

Affinities of the Boletus chromapes group to Royoungia and the description of two new genera, Harrya and Australopilus

2012 ◽  
Vol 25 (6) ◽  
pp. 418 ◽  
Author(s):  
Roy E. Halling ◽  
Mitchell Nuhn ◽  
Todd Osmundson ◽  
Nigel Fechner ◽  
James M. Trappe ◽  
...  
Keyword(s):  
New Genus ◽  
Phylogenetic Analyses ◽  
Large Subunit ◽  
Elongation Factor ◽  
Sister Group ◽  
Molecular Data ◽  
Translation Elongation ◽  
Spore Deposit ◽  
Large Subunit Rdna ◽  
Translation Elongation Factor 1Α

Harrya is described as a new genus of Boletaceae to accommodate Boletus chromapes, a pink-capped bolete with a finely scabrous stipe adorned with pink scabers, a chrome yellow base and a reddish-brown spore deposit. Phylogenetic analyses of large-subunit rDNA and translation elongation factor 1α confirmed Harrya as a unique generic lineage with two species, one of which is newly described (H. atriceps). Some Chinese taxa were recently placed in a separate genus, Zangia, supported by both morphology and molecular data. Multiple accessions from Queensland, Australia, support the synonymy of at least three species in a separate Australian clade in the new genus, Australopilus. The truffle-like Royoungia is also supported as a separate lineage in this clade of boletes. Even though it lacks stipe characters, it possesses the deep, bright yellow to orange pigments in the peridium. Additional collections from Zambia and Thailand represent independent lineages of uncertain phylogenetic placement in the Chromapes complex, but sampling is insufficient for formal description of new species. Specimens from Java referable to Tylopilus pernanus appear to be a sister group of the Harrya lineage.

scholarly journals Redescription, Morphogenesis, and Molecular Phylogeny of Pseudosincirra longicirrata nov. comb., With Establishment of a New Genus Pseudosincirra nov. gen. (Ciliophora, Hypotrichia)

2021 ◽  
Vol 12 ◽  
Author(s):  
Qi Gao ◽  
Chen Shao ◽  
Qiuyue Tang ◽  
Jingbao Li
Keyword(s):  
Molecular Phylogeny ◽  
New Genus ◽  
Sequence Data ◽  
Southern China ◽  
Phylogenetic Analyses ◽  
Small Subunit ◽  
Ssu Rdna ◽  
Original Population ◽  
The Family ◽  
Rdna Sequence Data

The morphology and morphogenesis of Pseudosincirra longicirrata nov. gen. and nov. comb., isolated from southern China, were investigated with living observation and protargol staining. Our population is similar to the original population in living characteristics and ciliary patterns. The main determinable morphogenetic features of P. longicirrata nov. comb. are the presence of five frontoventral-transverse cirral anlagen (FVT-anlagen) and a dorsomarginal kinety anlage. According to the origin of FVT-anlagen IV and V in proter, it can be determined that P. longicirrata nov. comb. possesses two frontoventral rows and one right marginal row. Hence, a new genus, Pseudosincirra nov. gen., is proposed, and the diagnosis of P. longicirrata nov. comb. is improved. The new genus is diagnosed as follows: adoral zone of membranelles and undulating membranes is in a Gonostomum pattern; there are three enlarged frontal cirri, one buccal cirrus, and one parabuccal cirrus; postperistomial cirrus and transverse cirri are lacking; there are two more or less long frontoventral rows and one right and two or more left marginal rows; cirri within all rows very widely spaced; dorsal kinety pattern is of Urosomoida type, that is, three dorsal kineties and one dorsomarginal kinety; and caudal cirri are present. Phylogenetic analyses based on the small subunit ribosomal (SSU rDNA) sequence data indicate that P. longicirrata nov. comb. clusters with Deviata and Perisincirra. It is considered that Pseudosincirra nov. gen. and Perisincirra paucicirrata should be assigned to the family Deviatidae; fine cirri, and cirri within all rows being relatively widely spaced, should be considered as plesiomorphies of Deviatidae; and Deviatidae is closely related to Dorsomarginalia or Strongylidium–Hemiamphisiella–Pseudouroleptus.

scholarly journals Debating phylogenetic relationships of the scleractinian Psammocora: molecular and morphological evidences

2007 ◽  
Vol 76 (1) ◽  
pp. 35-54 ◽  
Author(s):  
Francesca Benzoni ◽  
Fabrizio Stefani ◽  
Jaroslaw Stolarski ◽  
Michel Pichon ◽  
Guillaume Mitta ◽  
...  
Keyword(s):  
Molecular Phylogeny ◽  
Phylogenetic Relationships ◽  
Molecular Data ◽  
Genetic Distances ◽  
The Other ◽  
Congeneric Species ◽  
Genetic Affinity ◽  
Phylogenetic Structure ◽  
Skeletal Structures ◽  
The Family

The phylogenetic relationships of the scleractinian genus Psammocora with the other genera traditionally included in the family Siderastreidae and some Fungiidae are assessed based on combined skeletal and molecular data. P. explanulata differs from the other examined congeneric species (P. contigua, P. digitata, P. nierstraszi , P. profundacella, P. superficialis, and P. stellata) in possessing interstomatous septa between adult corallites, costae, and in having continuous buttress-like structures joining septal faces (i.e., fulturae) which typically occur in fungiids. These characters are shared with Coscinaraea wellsi but not with the remainder of the examined siderastreids (the congeneric C. columna, and Anomastraea irregularis, Horastrea indica, Pseudosiderastrea tayamai, Siderastrea savignyana) whose septa are interconnected by typical synapticulae. Most of the examined species form septa with distinct transverse groups of centers of calcification, a biomineralization pattern typical of the Robusta clade. The observations on skeletal structures corroborate the results of the ITS2 and 5.8S molecular phylogeny. C. wellsi and P. explanulata are phylogenetically very close to each other and show closer genetic affinity with the examined Fungiidae (Halomitra pileus, Herpolitha limax, Fungia paumotensis, and Podabacia crustacea) than with the other species in the genera Psammocora and Coscinaraea, or with any other siderastreid. Our results show that neither Psammocora nor Coscinaraea are monophyletic genera. The high genetic distances between the species of Siderastreidae, especially between Pseudosiderastrea tayamai and Siderastrea savignyana on one side and the other genera on the other, suggest a deep divergence in the phylogenetic structure of the family.

The American Proteaceae

1998 ◽  
Vol 11 (4) ◽  
pp. 287 ◽  
Author(s):  
Ghillean T. Prance ◽  
Vanessa Plana
Keyword(s):  
South America ◽  
Molecular Data ◽  
Central American ◽  
General Distribution ◽  
South American ◽  
Land Bridge ◽  
Eastern Brazil ◽  
The Family ◽  
Single Genus ◽  
Morphological And Molecular Data

The American Proteaceae are outliers from the main centres of diversity of the family in Australia and South Africa. There are about 83 species in eight genera which all belong to the monophyletic subfamily Grevilleoideae. Three genera, Embothrium, Oreocallis and Lomatia, are placed in the tribe Embothrieae (sensu Johnson and Briggs), four Euplassa, Gevuina, Panopsis and Roupala in the Macadamieae and the single genus Orites in the Oriteae. There are five genera endemic to America and three also have species in Australia and New Guinea (Gevuina, Lomatia and Orites). The Proteaceae appear to have arrived in South America via two routes. The larger genera Euplassa, Panopsis and Roupala, which are all endemic to America and have a general distribution in northern South America and south-eastern Brazil, are derived from Gondwanaland before it separated from South America. The remaining genera are distributed either in temperate South America or in the high Andes and appear to have arrived more recently via the Australia–Antarctica–South American connection. Three of these genera have species in both regions. The centres of species diversity of Euplassa, Panopsis and Roupala fall outside hypothesised forest refugia, indicating that they are not true rainforest species but species of seasonal habitats like those achieved at higher altitudes where they are commonly found. Two genera,Panopsis and Roupala, have reached Central America after the central American land bridge was formed six million years ago. The exact relationship to genera on other continents is still unclear and there is a need for a cladistic biogeographic analysis of the group based on both morphological and molecular data.

On the phylogeny of Ophiostoma, Ceratocystis s.s., and Microascus, and relationships within Ophiostoma based on partial ribosomal DNA sequences

1993 ◽  
Vol 71 (9) ◽  
pp. 1249-1265 ◽  
Author(s):  
G. Hausner ◽  
J. Reid ◽  
G. R. Klassen
Keyword(s):  
Dna Sequences ◽  
Sequence Data ◽  
Large Subunit ◽  
Small Subunit ◽  
Data Set ◽  
Rdna Sequences ◽  
Morphological Criteria ◽  
Small Subunit Rdna ◽  
Rdna Sequence Data ◽  
Large Subunit Rdna

Phylogenetic analysis of partial rDNA sequences suggests that Ophiostoma should remain the sole genus of the Ophiostomataceae, and this should be the sole family within the Ophiostomatales, whereas Ceratocystis s.s. would be best disposed within the Microascales. Although morphological criteria suggest that the genus Ophiostoma is heterogeneous, analysis of partial small subunit rDNA sequence data shows that Ophiostoma (excluding O. roraimense) represents a monophyletic taxon. Analysis of a partial large subunit rDNA data set, which included sequences from 55 species assignable to Ophiostoma, failed to support the strict subdivision of the genus based on either ascospore characters or the nature of the anamorph. Key words: Ceratocystis, Microascus, Ophiostoma, partial rDNA sequences, phylogeny.

Morphological characters and phylogenetic analysis reveal a new species of Phellinus with hooked hymenial setae from Vietnam

Phytotaxa ◽  
2018 ◽  
Vol 356 (1) ◽  
pp. 91 ◽  
Author(s):  
LIN ZHU ◽  
XING JI ◽  
JING SI ◽  
BAO-KAI CUI
Keyword(s):  
Rna Polymerase Ii ◽  
Large Subunit ◽  
Elongation Factor ◽  
Morphological Characters ◽  
Molecular Data ◽  
Translation Elongation ◽  
The Status ◽  
Large Subunit Rdna ◽  
Elongation Factor 1 ◽  
A New Species

Phellinus vietnamensis sp. nov. is described from Vietnam based on morphological characters and molecular data. Morphologically, it is characterized by perennial, pileate basidiomata, a dimitic hyphal system, hooked hymenial setae, and colorless, broadly subglobose to ovoid, thick-walled basidiospores 5.5–6 × 4.8–5.2 μm. Phylogenetically, the status of Phellinus vietnamensis is strongly supported based on sequences of the nuclear internal transcribed spacer (ITS) regions, the translation elongation factor 1-α gene (EF1-α) nuclear large subunit rDNA (nrLSU) and the second largest subunits of RNA polymerase II (RPB2).

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