Analysis of gene expression profiles for distinct stages of intestinal-type gastric cancer using suppression subtractive hybridization and cDNA microarray

2005 ◽  
Vol 40 (10) ◽  
pp. 1244-1245 ◽  
Author(s):  
Xiu-Ju Sun ◽  
Kai-Lai Sun ◽  
Zhi-Hong Zheng ◽  
Dong-Mei Hao ◽  
Wei-Neng Fu ◽  
...  
Oncogene ◽  
2004 ◽  
Vol 23 (40) ◽  
pp. 6830-6844 ◽  
Author(s):  
Natini Jinawath ◽  
Yoichi Furukawa ◽  
Suguru Hasegawa ◽  
Meihua Li ◽  
Tatsuhiko Tsunoda ◽  
...  

2004 ◽  
Vol 20 (1-5) ◽  
pp. 77-88 ◽  
Author(s):  
Kyung Taek Rim ◽  
Kun Koo Park ◽  
Jae Hyuck Sung ◽  
Yong Hyun Chung ◽  
Jeong Hee Han ◽  
...  

Welders with radiographic pneumoconiosis abnormalities have shown a gradual clearing of the X-ray identified effects following removal from exposure. In some cases, the pulmonary fibrosis associated with welding fumes appears in a more severe form in welders. Accordingly, for the early detection of welding-fume-exposure-induced pulmonary fibrosis, the gene expression profiles of peripheral mononuclear cells from rats exposed to welding fumes were studied using suppression-subtractive hybridization (SSH) and a cDNA microarray. As such, Sprague-Dawley rats were exposed to a stainless steel arc welding fume for 2 h/day in an inhalation chamber with a 107.59 / 2.6 mg/m3 concentration of total suspended particulate (TSP) for 30 days. Thereafter, the total RNA was extracted from the peripheral blood mononuclear cells, the cDNA synthesized from the total RNA using the SMARTTM PCR cDNA method, and SSH performed to select the welding-fume-exposure-regulated genes. The cDNAs identified by the SSH were then cloned into a plasmid miniprep, sequenced and the sequences analysed using the NCBI BLAST programme. In the SSH cloned cDNA microarray analysis, five genes were found to increase their expression by 1.9-fold or more, including Rgs 14, which plays an important function in cellular signal transduction pathways; meanwhile 36 genes remained the same and 30 genes decreased their expression by more than 59%, including genes associated with the immune response, transcription factors and tyrosine kinases. Among the 5200 genes analysed, 256 genes (5.1%) were found to increase their gene expression, while 742 genes (15%) decreased their gene expression in response to the welding-fume exposure when tested using a commercial 5.0k DNA microarray. Therefore, unlike exposure to other toxic substances, prolonged welding-fume exposure was found to substantially downregulate many genes.


Oncogene ◽  
2002 ◽  
Vol 21 (42) ◽  
pp. 6549-6556 ◽  
Author(s):  
Jiafu Ji ◽  
Xin Chen ◽  
Suet Yi Leung ◽  
Jen-Tsan A Chi ◽  
Kent Man Chu ◽  
...  

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