scholarly journals Community structure of bacteria on different types of mineral particles in a sandy soil

2012 ◽  
Vol 58 (5) ◽  
pp. 562-567 ◽  
Author(s):  
Masaya Nishiyama ◽  
Ryohei Sugita ◽  
Shigeto Otsuka ◽  
Keishi Senoo
2013 ◽  
Vol 47 (4) ◽  
pp. 291-297
Author(s):  
L. A. Kolodochka ◽  
O. S. Shevchenko

Abstract In different types of substrate (soil, litter, lichens and mosses) collected at three memorial complexes (cemeteries) of Kyiv (Ukraine), 70 species from 57 genera, 34 families of oribatid mites were found. A few eurytopic species capable of tolerance to different types of pollution make up an essential part in each species complex. The species diversity and complexity of oribatid community structure at researched areas increased with distance from the city center. There was no direct relation between the degree of dominance of most common species and the cemetery’s relative remoteness from the center of the city.


2016 ◽  
Vol 8 (1) ◽  
pp. 357-366 ◽  
Author(s):  
Eddy Yusron

A study on Echinoderms community structure in marine national parks of Wakatobi, Southeast Sulawesi was conducted in six locations, i.e., Waha Beach, Coastal Sombo, Beach Houses, Beach Kapota, Banakawa beach, and Umala beach in October 2013. All of the six parks were located the Wakatobi territorial waters with coordinates of 5°06'25" S and 123°124'10 E. The results showed of 18 species of echinoderms representing six different types of Asteroidea, two types of Ophiuroidea, six types of Echinoidea, and four types of Holothuroidea. Group of starfish or Asteroidea was the most prominent on seagrass area. Based on the six transects sites, it turned out that the group of starfish (Asteridea) occupied a relatively high level of species richness. From the quantitative analysis values, we obtained diversity index (H) of 1.105 in Sombu, the highest evenness index (J) of 0.989 was found in Umala, and the highest species richness index values (D) of 0.132 was obtained in kapota. It seemed that all echinoderm groups were generally like seagrass microhabitat (12 types). While, sand and dead coral habitats were only occupied by 8 (eight) echinoderm groups. Keywords: echinoderms, diversity, Wakatobi, Southeast Sulawesi


2013 ◽  
Vol 6 (2) ◽  
pp. 3931-3982 ◽  
Author(s):  
J. Moldanová ◽  
E. Fridell ◽  
H. Winnes ◽  
S. Holmin-Fridell ◽  
J. Boman ◽  
...  

Abstract. Emissions of particulate matter (PM) from shipping contribute significantly to the anthropogenic burden of PM. The environmental effects of PM from shipping include negative impact on human health through increased concentrations of particles in many coastal areas and harbour cities and the climate impact. The PM emitted by ship engines consists of organic carbon (OC), elemental or black carbon (EC/BC), sulphate, inorganic compounds containing V, Ni, Ca, Zn and other metals and associated water. The chemical composition and physical properties of PM vary with type of fuel burned, type of engine and engine operation mode. While primary PM emissions of species like V, Ni and Ca are supposed to be determined by composition of fuel and lubricant oil, emissions of particulate OC, EC and sulphate are affected both by fuel quality and by operation mode of the engine. In this paper a number of parameters describing emission factors (EFs) of gases and of particulate matter from ship engines were investigated during 2 on-board measurement campaigns for 3 different engines and 3 different types of fuels. The measured EFs for PM mass were in the range 0.3 to 2.7 g/kg-fuel with lowest values for emissions from combustion of marine gas oil (MGO) and the highest for heavy fuel oil (HFO). Emission factors for particle numbers EF(PN) in the range 5 × 1015–1 × 1017 #/kg-fuel were found, the number concentration was dominated by particles in the ultrafine mode and ca. 2/3 of particles were non-volatile. The PM mass was dominated by particles in accumulation mode. Main metal elements in case of HFO exhaust PM were V, Ni, Fe, Ca and Zn, in case of MGO Ca, Zn and P. V and Ni were typical tracers of HFO while Ca, Zn and P are tracers of the lubricant oil. EC makes up 10–38% of the PM mass, there were not found large differences between HFO and MGO fuels. EC and ash elements make up 23–40% of the PM mass. Organic matter makes up 25–60% of the PM. The measured EF(OC) were 0.59 ± 0.15 g/kg-fuel for HFO and 0.22 ± 0.01 g/kg-fuel for MGO. The measured EF(SO42−) were low, ca. 100–200 mg/kg-fuel for HFO with 1% fuel sulphur content (FSC), 70–85 mg/kg-fuel for HFO with 0.5% FSC and 3–6 mg/kg-fuel for MGO. This corresponds to 0.2–0.7% and 0.01–0.02% of fuel S converted to PM sulphate for HFO and MGO, respectively. The (scanning) transmission electron microscopy (TEM and STEM) images of the collected PM have shown three different types of particles: (1) soot composed mainly of C, O, sometimes N, and with traces of Si, S, V, Ca and Ni; (2) char and char-mineral particles composed of C, O, Ca and S (sometimes Si and Al) with traces of V and Ni and sometimes P and (3) amorphous, probably organic particles containing sulphur and some vanadium. The maps of elements obtained from STEM showed heterogeneous composition of primary soot particles with respect to the trace metals and sulphur. Composition of the char-mineral particles indicates that species like CaSO4, CaO and/or CaCO3, SiO2 and/or Al2SiO5, V2O5 and Fe3O4 may be present; the last two were also confirmed by analyses of FTIR spectra of the PM samples. The TPO of PM from the ship exhaust samples showed higher soot oxidation reactivity compared to automotive diesel soot, PM from the HFO exhaust is more reactive than PM from the MGO exhaust. This higher oxidation reactivity could be explained by high content of catalytically active contaminants; in particular in the HFO exhaust PM for which the energy-dispersive X-ray spectroscopy (EDXRF) analyses showed high content of V, Ni and S. Oxidative potential measured as a rate of consumption of consumption of Dithiothreitol (DTT) was for the first time measured on PM from ship exhaust. The obtained values were between 0.01 and 0.04 nmol-DTT/min/μg-PM, quite similar to oxidative potentials of PM collected in urban and traffic sites. The data obtained during the experiments add information on emission factors for both gaseous and PM-bound compounds from ship engines using different fuels and under different engine load conditions. Observed variability of the EFs illustrates uncertainties of these emission factors as a result of measurement uncertainties, influences from trace components of fuels and lubricants and from differences between individual engines.


2014 ◽  
Vol 62 (4) ◽  
pp. 1587 ◽  
Author(s):  
Georgea Santos Nogueira-Melo ◽  
Paulo Jorge Parreira Santos ◽  
Tatiana Baptista Gibertoni

<p>Mangroves are transitional ecosystems between terrestrial and marine environments, and are distinguished by a high abundance of animals, plants, and fungi. Although macrofungi occur in different types of habitat, including mangroves, little is known about their community structure and dynamic. Therefore the aim of this study was to analyze the diversity of macrofungi in a number of Brazilian mangroves, and the relationship between such diversity, precipitation and area of collection. A total of 32 field trips were undertaken from 2009 to 2010, and macrofungi were studied in four 250×40m transects: Timbó and Santa Cruz Channel on the Northern coast, and Maracaípe and Ariquindá on the Southern coast. All basidiomata found along the transects were placed in paper bags, air-dried and identified using existing literature. It was found that Northern areas predominantly featured <em>Avicennia schaueriana</em> mangroves, while <em>Rhizophora mangle</em> dominated in Southern transects. A total of 275 specimens were collected, and 33 species, 28 genera, 14 families and six orders were represented. Overall abundance and species richness did not vary significantly among areas, but varied according to time, being higher during the rainy season. Subtle differences in composition were observed over time and between areas, probably due to variations in plant species occurrence. Further studies with collections during months of greater precipitation in transects dominated by different mangrove species of the same ecosystem are suggested to assess the overall diversity of mycobiota in these ecosystems.</p><p> </p>


2020 ◽  
Author(s):  
Lei Zhang ◽  
Demei Tu ◽  
Xingchen Li ◽  
Wenxuan Lu ◽  
Jing Li

Abstract Background: The contamination of the aquatic environment of urban rivers with industrial wastewater has affected the abiotic conditions and biological activities of the trophic levels of the ecosystem, particularly sediments. However, most current research about microorganism in urban aquatic environments has focused on indicator bacteria related to feces and organic pollution. Meanwhile, they ignored the interactions among microorganisms. To deeply understand the impact of industrial contamination on microbial community, we study the bacterial community structure and diversity in river sediments under the influence of different types of industrial pollution by Illumina MiSeq high-throughput sequencing technology and conduct a more detailed analysis of microbial community structure through co-occurrence networks.Results: The overall community composition and abundance of individual bacterial groups differed between samples. In addition, redundancy analysis indicated that the structure of the bacterial community in river sediments was influenced by a variety of environmental factors. TN, TP, TOC and metals (Cu, Zn and Cd) were the most important driving factors that determined the bacterial community in urban river sediments (P <0.01). According to PICRUSt analysis, the bacterial communities in different locations had similar overall functional profiles. It is worth noting that the 15 functional genes related to xenobiotics biodegradation and metabolism were the most abundant in the same location. The non-random assembly patterns of bacterial composition in different types of industrially polluted sediments were determined by a co-occurrence network. Environmental conditions resulting from different industrial pollutants may play an important role in determining their co-occurrence patterns of these bacterial taxa. Among them, the bacterial taxa involved in carbon and nitrogen cycles in module I were relatively abundant, and the bacterial taxa in module II were involved in the repair of metal pollution.Conclusions: Our data indicate that long-term potential interactions between different types of industrial pollution and taxa collectively affect the structure of the bacterial community in urban river sediments.


2020 ◽  
Vol 8 (1) ◽  
pp. 1-41 ◽  
Author(s):  
Vinh Loc Dao ◽  
Cécile Bothorel ◽  
Philippe Lenca

AbstractDiscovering community structure in complex networks is a mature field since a tremendous number of community detection methods have been introduced in the literature. Nevertheless, it is still very challenging for practitioners to determine which method would be suitable to get insights into the structural information of the networks they study. Many recent efforts have been devoted to investigating various quality scores of the community structure, but the problem of distinguishing between different types of communities is still open. In this paper, we propose a comparative, extensive, and empirical study to investigate what types of communities many state-of-the-art and well-known community detection methods are producing. Specifically, we provide comprehensive analyses on computation time, community size distribution, a comparative evaluation of methods according to their optimization schemes as well as a comparison of their partitioning strategy through validation metrics. We process our analyses on a very large corpus of hundreds of networks from five different network categories and propose ways to classify community detection methods, helping a potential user to navigate the complex landscape of community detection.


Author(s):  
Karen J. Esler ◽  
Anna L. Jacobsen ◽  
R. Brandon Pratt

Similar drivers across mediterranean-type climate (MTC) regions have selected for plants with comparable traits (Chapters 3 and 6). This has resulted in the assembly of MTC region plant communities (groups of interacting populations of organisms) that are broadly similar, both structurally and functionally. However, there are also many different types of communities within MTC regions that may be quite divergent from one another even though they occur within a single region. These differences in community types also reveal both similarities and differences among the different MTC regions. This chapter briefly introduces and describes the composition and structure of the main types of plant communities that are found within MTC regions, including the iconic evergreen sclerophyllous shrublands, known as mediterranean-type vegetation (MTV), and other types of shrublands (drought-deciduous soft-leaved shrubs, desert shrublands along arid margins), grasslands, woodlands, and forests.


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