Enhanced Anti-E. coli ST131 Metabolites Production by a Novel Streptomyces sp. CMB51 Strain Isolated from a Coal Mininig Soil Using Statistical Optimization

2021 ◽  
pp. 1-15
Author(s):  
Ibtissem Djinni ◽  
Warda Djoudi ◽  
Nadia Harfi ◽  
Imene Stambouli ◽  
Sara Khamtache ◽  
...  
2013 ◽  
Vol 3 (8) ◽  
pp. 650-656 ◽  
Author(s):  
Valliappan Karuppiah ◽  
Chandramohan Aarthi ◽  
Kannan Sivakumar ◽  
Lakshmanan Kannan

Marine Drugs ◽  
2019 ◽  
Vol 17 (4) ◽  
pp. 211 ◽  
Author(s):  
Waner Zhan ◽  
Jianyun Yao ◽  
Kaihao Tang ◽  
Yangmei Li ◽  
Yunxue Guo ◽  
...  

Toxin-antitoxin (TA) systems are ubiquitous and abundant genetic elements in bacteria and archaea. Most previous TA studies have focused on commensal and pathogenic bacteria, but have rarely focused on marine bacteria, especially those isolated from the deep sea. Here, we identified and characterized three putative TA pairs in the deep-sea-derived Streptomyces sp. strain SCSIO 02999. Our results showed that Orf5461/Orf5462 and Orf2769/Orf2770 are bona fide TA pairs. We provide several lines of evidence to demonstrate that Orf5461 and Orf5462 constitute a type-II TA pair that are homologous to the YoeB/YefM TA pair from Escherichia coli. Although YoeB from SCSIO 02999 was toxic to an E. coli host, the homologous YefM antitoxin from SCSIO 02999 did not neutralize the toxic effect of YoeB from E. coli. For the Orf2769/Orf2770 TA pair, Orf2769 overexpression caused significant cell elongation and could lead to cell death in E. coli, and the neighboring Orf2770 could neutralize the toxic effect of Orf2769. However, no homologous toxin or antitoxin was found for this pair, and no direct interaction was found between Orf2769 and Orf2770. These results suggest that Orf2769 and Orf2770 may constitute a novel TA pair. Thus, deep-sea bacteria harbor typical and novel TA pairs. The biochemical and physiological functions of different TAs in deep-sea bacteria warrant further investigation.


2020 ◽  
Vol 21 (7) ◽  
pp. 2558
Author(s):  
Piotr Siupka ◽  
Artur Piński ◽  
Dagmara Babicka ◽  
Zofia Piotrowska-Seget

The increasing resistance of fungal pathogens has heightened the necessity of searching for new organisms and compounds to combat their spread. Streptomyces are bacteria that are well-known for the production of many antibiotics. To find novel antibiotic agents, researchers have turned to previously neglected and extreme environments. Here, we isolated a new strain, Streptomyces sp. S-2, for the first time, from black soot after hard coal combustion (collected from an in-use household chimney). We examined its antifungal properties against plant pathogens and against fungi that potentially pose threat to human health (Fusarium avenaceum, Aspergillus niger and the environmental isolates Trichoderma citrinoviridae Cin-9, Nigrospora oryzae sp. roseF7, and Curvularia coatesieae sp. junF9). Furthermore, we obtained the genome sequence of S-2 and examined its potential for secondary metabolites production using anti-SMASH software. The S-2 strain shows activity against all of the tested fungi. Genome mining elucidated a vast number of biosynthetic gene clusters (55), which distinguish this strain from closely related strains. The majority of the predicted clusters were assigned to non-ribosomal peptide synthetases or type 1 polyketide synthetases, groups known to produce compounds with antimicrobial activity. A high number of the gene clusters showed no, or low similarity to those in the database, raising the possibility that S-2 could be a producer of novel antibiotics. Future studies on Streptomyces sp. S-2 will elucidate its full biotechnological potential.


2020 ◽  
Vol 17 (1) ◽  
Author(s):  
Mee K. Lee ◽  
Mohd Saberi Mohamad ◽  
Yee Wen Choon ◽  
Kauthar Mohd Daud ◽  
Nurul Athirah Nasarudin ◽  
...  

AbstractThe metabolic network is the reconstruction of the metabolic pathway of an organism that is used to represent the interaction between enzymes and metabolites in genome level. Meanwhile, metabolic engineering is a process that modifies the metabolic network of a cell to increase the production of metabolites. However, the metabolic networks are too complex that cause problem in identifying near-optimal knockout genes/reactions for maximizing the metabolite’s production. Therefore, through constraint-based modelling, various metaheuristic algorithms have been improvised to optimize the desired phenotypes. In this paper, PSOMOMA was compared with CSMOMA and ABCMOMA for maximizing the production of succinic acid in E. coli. Furthermore, the results obtained from PSOMOMA were validated with results from the wet lab experiment.


2016 ◽  
Vol 5 (1) ◽  
pp. 28-34
Author(s):  
Mirko Lino Navarro
Keyword(s):  

Objetivo. Evaluar la actividad antimicrobiana in vitro del actinomiceto marino cepa 13A-2 frente a enterobacterias productoras de P-lactamasas aisladas de pacientes con infecciones urinarias. Material y Métodos. Mediante la técnica de doble capa se selecciono el actinomiceto con la mayor actividad antagonista frente a 16 enterobacterias de los géneros Klebsiella sp., Proteus sp. y E. coli, productoras de betalactamasas de pacientes con infección urinaria del Instituto Materno Perinatal de Lima. La cepa 13-A2, aislada de una esponja marina colectada del litoral peruano, fue identificada molecularmente por amplificación del gen que codifica ARNr 16S La naturaleza peptídica del antimicrobiano se determinó mediante las técnicas de Bradford, Qubit fluoremeter, PAGE-SDS y HPLC. Se logró cuantificar la producción del antimicrobiano utilizando un nuevo medio de cultivo propuesto por el autor el cual fue comparado con caldo marino.


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