Molecular characterisation of Proxipyricularia zingiberis causing blast disease of ginger in Vietnam

Author(s):  
Duong Thi Nguyen ◽  
Nguyen Chi Hieu ◽  
Dao Thi Phuong Linh ◽  
Hoang Thi Bich Thao ◽  
Le Thi Kieu Oanh ◽  
...  
2018 ◽  
Vol 1 (2) ◽  
pp. 40-57
Author(s):  
Abdulghani Alsamarai ◽  
Shler Khorshed ◽  
Imad Weli

Background: Antibiotic resistance emerged as clinical problem challenge the effective treatment of infections. Virulence factor may play an important role in the influence of antimicrobial resistance. Objective: To determine the frequency of resistance gene in E. coli clinical isolates from women with urinary tract infection. Materials and Methods: Fifteen E.coli clinical isolates were tested by PCR to determine their molecular characterization. Results: The bla CTX –M gene was not detected in 6.7% out of the tested 15 E. coli clinical isolates from women with urinary tract infection. However, bla OXA gene was detected in all E. coli tested clinical isolates from pregnant women, female student and diabetic women with urinary tract infection. While bla TEM gene and bla SHV gene were not detected in 33.3% and 40% out of the tested E. coli clinical isolates respectively. Conclusions: Four types of ESBL genes were detected, and shows new trend of distribution, which indicated the predominance of OXA and CTX-M genes.


2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Debayan Mondal ◽  
Prudveesh Kantamraju ◽  
Susmita Jha ◽  
Gadge Sushant Sundarrao ◽  
Arpan Bhowmik ◽  
...  

AbstractIndigenous folk rice cultivars often possess remarkable but unrevealed potential in terms of nutritional attributes and biotic stress tolerance. The unique cooking qualities and blissful aroma of many of these landraces make it an attractive low-cost alternative to high priced Basmati rice. Sub-Himalayan Terai region is bestowed with great agrobiodiversity in traditional heirloom rice cultivars. In the present study, ninety-nine folk rice cultivars from these regions were collected, purified and characterized for morphological and yield traits. Based on traditional importance and presence of aroma, thirty-five genotypes were selected and analyzed for genetic diversity using micro-satellite marker system. The genotypes were found to be genetically distinct and of high nutritive value. The resistant starch content, amylose content, glycemic index and antioxidant potential of these genotypes represented wide variability and ‘Kataribhog’, ‘Sadanunia’, ‘Chakhao’ etc. were identified as promising genotypes in terms of different nutritional attributes. These cultivars were screened further for resistance against blast disease in field trials and cultivars like ‘Sadanunia’, ‘T4M-3-5’, ‘Chakhao Sampark’ were found to be highly resistant to the blast disease whereas ‘Kalonunia’, ‘Gobindabhog’, ‘Konkanijoha’ were found to be highly susceptible. Principal Component analysis divided the genotypes in distinct groups for nutritional potential and blast tolerance. The resistant and susceptible genotypes were screened for the presence of the blast resistant pi genes and association analysis was performed with disease tolerance. Finally, a logistic model based on phenotypic traits for prediction of the blast susceptibility of the genotypes is proposed with more than 80% accuracy.


2021 ◽  
Vol 2 (1) ◽  
Author(s):  
Wilton Mbinda ◽  
Agnes Kavoo ◽  
Fredah Maina ◽  
Margaret Odeph ◽  
Cecilia Mweu ◽  
...  

Abstract Background Finger millet blast disease, caused by Pyricularia oryzae, is a serious constrain of finger millet production which is threatening global food security especially to the resource poor smallholder farmers in arid and semi-arid regions. The disease adversely affects finger millet production and consumption due to its wide distribution and destruction in all finger millet growing areas of southern Asia and eastern Africa. Here, we present a study that investigated the occurrence, impact, risk factors and farmers’ knowledge and perceptions of finger millet blast in Kenya. Methods We surveyed blast disease occurrence and interviewed farmers in Bungoma and Kisii Counties of Kenya during March–April 2019. Data were analysed using SPSS statistical program. Descriptive analysis was done by calculating means, percentages, frequencies, and standard errors. Comparative statistics, chi-square and t-tests, were used to evaluate differences existing among the farm characteristics and socio-demographics and the knowledge and perceptions of blast disease and its management practices. Results Our results show that blast disease is prevalent in all surveyed areas and adversely affects the productivity of the crop leading to poor yields. The disease occurrence varied from 92 to 98%, and was significantly higher in the major finger millet growing areas compared to the minor ones. Blast occurrence was associated with rainfall, altitude, planting density, intercropping and other farming practices. In all the surveyed regions, farmers had little knowledge about blast disease identification, its detection and spread. Further, the farmers’ awareness of blast disease control was inconsistent with established practices. Conclusions Our results show mitigation of finger millet blast disease should aim at improving farmers’ adoption of best practices through development of acceptable blast-resistant finger millet varieties, use of sustainable disease management practices, fostering linkages and creating new partnerships in the production-supply chain and maintaining a functional seed system. Findings from this study provide essential insights for effective decision making and management of the disease. This is fundamental to sustainable and secure food and income for finger millet growing farmers in Kenya.


2021 ◽  
Vol 9 (7) ◽  
pp. 1441
Author(s):  
Van Bach Lam ◽  
Thibault Meyer ◽  
Anthony Arguelles Arias ◽  
Marc Ongena ◽  
Feyisara Eyiwumi Oni ◽  
...  

Rice monoculture in acid sulfate soils (ASSs) is affected by a wide range of abiotic and biotic constraints, including rice blast caused by Pyricularia oryzae. To progress towards a more sustainable agriculture, our research aimed to screen the biocontrol potential of indigenous Bacillus spp. against blast disease by triggering induced systemic resistance (ISR) via root application and direct antagonism. Strains belonging to the B. altitudinis and B. velezensis group could protect rice against blast disease by ISR. UPLC–MS and marker gene replacement methods were used to detect cyclic lipopeptide (CLiP) production and construct CLiPs deficient mutants of B. velezensis, respectively. Here we show that the CLiPs fengycin and iturin are both needed to elicit ISR against rice blast in potting soil and ASS conditions. The CLiPs surfactin, iturin and fengycin completely suppressed P. oryzae spore germination resulting in disease severity reduction when co-applied on rice leaves. In vitro microscopic assays revealed that iturin and fengycin inhibited the mycelial growth of the fungus P. oryzae, while surfactin had no effect. The capacity of indigenous Bacillus spp. to reduce rice blast by direct and indirect antagonism in ASS conditions provides an opportunity to explore their usage for rice blast control in the field.


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