scholarly journals Lower tumor mutational burden (TMB) and hepatic metastases may predict for lack of response to PD-1 blockade in MSI-H metastatic colorectal cancer (MCRC)

2018 ◽  
Vol 29 ◽  
pp. viii179
Author(s):  
I. Amanam ◽  
J. Chao ◽  
D. Lim ◽  
S. Rahmanuddin ◽  
A.B. Schrock ◽  
...  
2019 ◽  
Vol 37 (14) ◽  
pp. 1217-1227 ◽  
Author(s):  
Federico Innocenti ◽  
Fang-Shu Ou ◽  
Xueping Qu ◽  
Tyler J. Zemla ◽  
Donna Niedzwiecki ◽  
...  

PURPOSE CALGB/SWOG 80405 was a randomized phase III trial that found no statistically significant difference in overall survival (OS) in patients with first-line metastatic colorectal cancer treated with chemotherapy plus either bevacizumab or cetuximab. Primary tumor DNA from 843 patients has been used to discover genetic markers of OS. PATIENTS AND METHODS Gene mutations were determined by polymerase chain reaction. Microsatellite status was determined by genotyping of microsatellites. Tumor mutational burden (TMB) was determined by next-generation sequencing. Cox proportional hazard models were used, with adjusting factors. Interaction of molecular alterations with either the bevacizumab or the cetuximab arms was tested. RESULTS Patients with high TMB in their tumors had longer OS than did patients with low TMB (hazard ratio [HR], 0.73 [95% CI, 0.57 to 0.95]; P = .02). In patients with microsatellite instability–high (MSI-H) tumors, longer OS was observed in the bevacizumab arm than in the cetuximab arm (HR, 0.13 [95% CI, 0.06 to 0.30]; interaction P < .001 for interaction between microsatellite status and the two arms). Patients with BRAF mutant tumors had shorter OS than did patients with wild-type (WT) tumors (HR, 2.01 [95% CI, 1.49 to 2.71]; P < .001). Patients with extended RAS mutant tumors had shorter OS than did patients with WT tumors (HR, 1.52 [95% CI, 1.26 to 1.84]; P < .001). Patients with triple-negative tumors (WT for NRAS/ KRAS/ BRAF) had a median OS of 35.9 months (95% CI, 33.0 to 38.8 months) versus 22.2 months (95% CI, 19.6 to 24.4 months ) in patients with at least one mutated gene in their tumors ( P < .001). CONCLUSION In patients with metastatic colorectal cancer treated in first line, low TMB, and BRAF and RAS mutations are negative prognostic factors. Patients with MSI-H tumors benefited more from bevacizumab than from cetuximab, and studies to confirm this effect of MSI-H are warranted.


2018 ◽  
Vol 36 (15_suppl) ◽  
pp. 3591-3591 ◽  
Author(s):  
Volker Heinemann ◽  
Nicole Kraemer ◽  
Hannes Buchner ◽  
Ludwig Fischer von Weikersthal ◽  
Thomas Decker ◽  
...  

2020 ◽  
Vol 8 (Suppl 3) ◽  
pp. A25-A25
Author(s):  
Charles Schneider ◽  
Michael Krainock ◽  
Meenakshi Malhotra ◽  
Paul Billings ◽  
Alexey Aleshin

BackgroundHigh microsatellite instability (MSI-H) in metastatic colorectal cancer (mCRC) is associated with a beneficial response to immunotherapy. Additionally, within MSI-H cancers, tumor mutational burden (TMB) is independently predictive of immunotherapy responsiveness.1 Durable responses to therapy have been demonstrated in patients with MSI-H mCRC treated with Nivolumab and Ipilimumab.2 However, less is known about treatment responsiveness in patients with high mutational burden mCRC that demonstrates microsatellite stability (MSI-L).MethodsWe report on a 55-year-old female with a PALB-2 germline mutation who presented with a right-sided colonic adenocarcinoma with the involvement of the omentum and liver. The patient received 6 cycles of neoadjuvant FOLFOX, followed by an extended right hemicolectomy, omentectomy, and partial liver resection. The surgical specimen revealed a moderately differentiated adenocarcinoma in the cecum demonstrating a poor response to chemotherapy, 0/23 lymph nodes positive, one focus of adenocarcinoma in the liver with clear margins, and focal omental involvement with adenocarcinoma. The patient subsequently underwent 6 cycles of ‘adjuvant’ FOLFOX, with Oxaliplatin omitted after 3 cycles secondary to peripheral neuropathy. Soon after the patient experienced a recurrence that involved the anterior abdominal wall, between the peritoneum, and stomach, which was subsequently resected with negative margins. Molecular profiling of this metastatic focus revealed a TMB of 15.4 mutations per megabase, proficient Mismatch Repair (pMMR), a PDL1 CPS score of 26, and microsatellite stable (MSS) status. First, ctDNA analysis was performed at the time of recurrence and was found to be positive. Based on the TMB score of 15.4 and an elevated PDL1 score, the patient was initiated on Nivolumab and Ipilimumab. ctDNA measurements were obtained at the patient‘s request.ResultsDNA assessment performed after surgery and prior to initiation of immunotherapy revealed an approximate doubling of ctDNA levels, measured in mean tumor molecules (MTM) per mL of plasma, every month. During this period of time and correlating with the rise in ctDNA levels, the patient developed a new and enlarging FDG avid cardiophrenic lymph node. Following 2 cycles of Nivolumab and Ipilimumab, the FDG avid lymph node completely resolved and ctDNA clearance was observed (figure 1).Abstract 26 Figure 1ctDNA time-course demonstrating ctDNA kineticsTime-point A represents the initial ctDNA assay, performed at the time of resection of peritoneal metastasis. An additional time-point (B) drawn a month later reveals a further increase in ctDNA. Time-point C represents a peak in ctDNA levels, concomitant with the new emergence of a PET avid cardiophrenic lymph node. Combination Immunotherapy (IO) was begun shortly after time-point C. Time-point D represents ctDNA clearance and radiographic resolution of lymph node metastasis after two cycles of IO. MTM/mL - mean tumor molecules/milliliter of plasmaConclusionsHere we present a case of ctDNA clearance correlating with a radiographic resolution of metastatic disease in a patient with MSS mCRC. The data is provocative and suggests a possible contributory role of ctDNA-based testing as an additional monitoring parameter to measure disease-responsiveness to immunotherapy. Further investigation is warranted.Ethics ApprovalN/AConsentN/AReferencesSchrock AB, Ouyang C, Sandhu J, Sokol E, Jin D, Ross J8, Miller VA, Lim D, Amanam l, Chao J, Catenacci D, Cho M, Braiteh 7, Klempner SJ, Ali 8M, Fakih M. Tumor mutational burden is predictive of response to immune checkpoint inhibitors in MSl-high metastatic colorectal cancer. Ann Oncol 2019;30(7):1096–1103Overman MJ, et al. Durable Clinical/Benefit With Nivolumab Plus lpilimumab in DNA Mismatch Repair-Deficient/Microsatellite Instability-High Metastatic Colorectal Cancer. Clin Oncol 2018;36(8):773–779.


2021 ◽  
Vol 19 (1) ◽  
Author(s):  
Lijun Xu ◽  
Qing Zheng

Abstract Background Tumor mutational burden (TMB) is a promising predictor, which could stratify colorectal cancer (CRC) patients based on the response to immune checkpoint inhibitors (ICIs). MicroRNAs (miRNAs) act as the key regulators of anti-cancer immune response. However, the relationship between TMB and miRNA expression profiles is not elucidated in CRC. Methods Differentially expressed miRNAs (DE miRNAs) between the TMBhigh group and the TMBlow group were identified for the CRC cohort of the TCGA database. In the training cohort, a miRNA-related expression signature for predicting TMB level was developed by the least absolute shrinkage and selection operator (LASSO) method and tested with reference to its discrimination, calibration, and decision curve analysis (DCA) in the validation cohort. Functional enrichment analysis of these TMB-related miRNAs was performed. The correlation between this miRNA-related expression signature and three immune checkpoints was analyzed. Results Twenty-one out of 43 DE miRNAs were identified as TMB-related miRNAs, which were used to develop a miRNA-related expression signature. This TMB-related miRNA signature demonstrated great discrimination (AUCtest set = 0.970), satisfactory calibration (P > 0.05), and clinical utility in the validation cohort. Functional enrichment results revealed that these TMB-related miRNAs were mainly involved in biological processes associated with immune response and signaling pathways related with cancer. This miRNA-related expression signature showed a median positive correlation with PD-L1 (R = 0.47, P < 0.05) and CTLA4 (R = 0.39, P < 0.05) and a low positive correlation with PD-1 (R = 0.16, P < 0.05). Conclusion This study presents a miRNA-related expression signature which could stratify CRC patients with different TMB levels.


2017 ◽  
Vol 8 (5) ◽  
pp. 858-866 ◽  
Author(s):  
Sachin G. Pai ◽  
Benedito A. Carneiro ◽  
Young Kwang Chae ◽  
Ricardo L. Costa ◽  
Aparna Kalyan ◽  
...  

2017 ◽  
Vol 35 (15_suppl) ◽  
pp. 3583-3583 ◽  
Author(s):  
Jeffrey S. Ross ◽  
Siraj Mahamed Ali ◽  
Julia Andrea Elvin ◽  
Alexa Betzig Schrock ◽  
James Suh ◽  
...  

3583 Background: ERBB2 ( HER2) genomic alterations (GA) are evolving therapy taregets in metastatc coorectal cancer (mCRC). Methods: Hybrid capture based comprehensive genomic profiling (CGP) was performed on 8874 (9.6%) mCRC including both colonic adenocarcinomas (7587 cases; 85%) and rectal adenocarcinomas (1287 cases, 15%) Tumor mutational burden (TMB) was calculated from a minimum of 1.2 Mb of sequenced DNA. Results: ERBB2 amplifications or a short variant (SV) alterations or both were found in 433 (4.9%) of the total mCRC. 195 (45%) of the ERBB2 positive mCRC were female and 238 (55%) were male. Median age was 54 years (range 22 to 88 years). The most frequently co-altered genes were SV GA in TP53 (82%), APC (70%), KRAS (26%), SMAD4 (15%) and PIK3CA (13%). Clinically relevant GA significantly under-represented in ERBB2-altered CRC included significantly reduced GA in KRAS at 26% (p = 0.001) and BRAF at 4% (p = 0.003) as well as other kinases at 1% including EGFR, KIT, MET and RET. The frequency of TMB at > 10 mut/Mb (p < 0.0001), but at > 20 mut/Mb mCRC cases demonstrated virtually the same results regardless to ERBB2 status at a frequency of x%. The overall ERBB2 GA frequency at 5.3% in rectal mCRC is slightly higher than that seen in colonic mCRC at 4.9%, (p = 0.36). The frequency of TMB > 10 mut/Mb in ERBB2 WT mCRC is greater in the colonic mCRC than the rectal mCRC (p < 0.0001 for both comparisons). When > 20 mut/Mb is used as the cut-off, the greater frequency of TMB in colonic mCRC versus rectal mCRC remains significant (p < 0.0001). When the ERBB2altered mCRC cases are evaluated, the greater frequency of TMB > 10 mu/Mb in colonic mCRC versus rectal mCRC remains significant (p = 0.009), but the greater frequency in colonic verses rectal mCRC at the > 20 mut/Mb is not significant (p = 0.37). Conclusions: Although lower than observed in breast and upper gastrointestinal carcinomas where anti-HER2 therapies are approved indications, the frequency of ERBB2 GA in CRC at 4.9% is significant. Importantly, nearly half of CRC ERBB2 alterations are SVs, not detectable by routine IHC and FISH testing. However, the success of anti-HER2 therapies shown here and progress in on-going clinical trials indicates that targeting ERBB2 has potential to become an approved advance in precision therapy for mCRC patients.


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