scholarly journals INDRA-IPM: interactive pathway modeling using natural language with automated assembly

2019 ◽  
Vol 35 (21) ◽  
pp. 4501-4503 ◽  
Author(s):  
Petar V Todorov ◽  
Benjamin M Gyori ◽  
John A Bachman ◽  
Peter K Sorger

Abstract Summary INDRA-IPM (Interactive Pathway Map) is a web-based pathway map modeling tool that combines natural language processing with automated model assembly and visualization. INDRA-IPM contextualizes models with expression data and exports them to standard formats. Availability and implementation INDRA-IPM is available at: http://pathwaymap.indra.bio. Source code is available at http://github.com/sorgerlab/indra_pathway_map. The underlying web service API is available at http://api.indra.bio:8000. Supplementary information Supplementary data are available at Bioinformatics online.

2018 ◽  
Vol 23 (3) ◽  
pp. 175-191
Author(s):  
Anneke Annassia Putri Siswadi ◽  
Avinanta Tarigan

To fulfill the prospective student's information need about student admission, Gunadarma University has already many kinds of services which are time limited, such as website, book, registration place, Media Information Center, and Question Answering’s website (UG-Pedia). It needs a service that can serve them anytime and anywhere. Therefore, this research is developing the UGLeo as a web based QA intelligence chatbot application for Gunadarma University's student admission portal. UGLeo is developed by MegaHal style which implements the Markov Chain method. In this research, there are some modifications in MegaHal style, those modifications are the structure of natural language processing and the structure of database. The accuracy of UGLeo reply is 65%. However, to increase the accuracy there are some improvements to be applied in UGLeo system, both improvement in natural language processing and improvement in MegaHal style.


2020 ◽  
Vol 58 (7) ◽  
pp. 1227-1255
Author(s):  
Glenn Gordon Smith ◽  
Robert Haworth ◽  
Slavko Žitnik

We investigated how Natural Language Processing (NLP) algorithms could automatically grade answers to open-ended inference questions in web-based eBooks. This is a component of research on making reading more motivating to children and to increasing their comprehension. We obtained and graded a set of answers to open-ended questions embedded in a fiction novel written in English. Computer science students used a subset of the graded answers to develop algorithms designed to grade new answers to the questions. The algorithms utilized the story text, existing graded answers for a given question and publicly accessible databases in grading new responses. A computer science professor used another subset of the graded answers to evaluate the students’ NLP algorithms and to select the best algorithm. The results showed that the best algorithm correctly graded approximately 85% of the real-world answers as correct, partly correct, or wrong. The best NLP algorithm was trained with questions and graded answers from a series of new text narratives in another language, Slovenian. The resulting NLP algorithm model was successfully used in fourth-grade language arts classes for providing feedback to student answers on open-ended questions in eBooks.


2021 ◽  
Author(s):  
Nathan Ji ◽  
Yu Sun

The digital age gives us access to a multitude of both information and mediums in which we can interpret information. A majority of the time, many people find interpreting such information difficult as the medium may not be as user friendly as possible. This project has examined the inquiry of how one can identify specific information in a given text based on a question. This inquiry is intended to streamline one's ability to determine the relevance of a given text relative to his objective. The project has an overall 80% success rate given 10 articles with three questions asked per article. This success rate indicates that this project is likely applicable to those who are asking for content level questions within an article.


2018 ◽  
Vol 12 (02) ◽  
pp. 237-260
Author(s):  
Weifeng Xu ◽  
Dianxiang Xu ◽  
Abdulrahman Alatawi ◽  
Omar El Ariss ◽  
Yunkai Liu

Unigram is a fundamental element of [Formula: see text]-gram in natural language processing. However, unigrams collected from a natural language corpus are unsuitable for solving problems in the domain of computer programming languages. In this paper, we analyze the properties of unigrams collected from an ultra-large source code repository. Specifically, we have collected 1.01 billion unigrams from 0.7 million open source projects hosted at GitHub.com. By analyzing these unigrams, we have discovered statistical properties regarding (1) how developers name variables, methods, and classes, and (2) how developers choose abbreviations. We describe a probabilistic model which relies on these properties for solving a well-known problem in source code analysis: how to expand a given abbreviation to its original indented word. Our empirical study shows that using the unigrams extracted from source code repository outperforms the using of the natural language corpus by 21% when solving the domain specific problems.


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