scholarly journals Genome-Wide Estimates of Transposable Element Insertion and Deletion Rates in Drosophila Melanogaster

2017 ◽  
Vol 9 (5) ◽  
pp. 1329-1340 ◽  
Author(s):  
Jeffrey R. Adrion ◽  
Michael J. Song ◽  
Daniel R. Schrider ◽  
Matthew W. Hahn ◽  
Sarah Schaack
Keyword(s):  
Drosophila Melanogaster ◽  
Transposable Element ◽  
Transposable Element Insertion ◽  
Element Insertion ◽  
Insertion And Deletion ◽  
Genome Wide

scholarly journals Genome-wide characterization of non-reference transposable element insertion polymorphisms reveals genetic diversity in tropical and temperate maize

BMC Genomics ◽  
2017 ◽  
Vol 18 (1) ◽  
Author(s):  
Xianjun Lai ◽  
James C. Schnable ◽  
Zhengqiao Liao ◽  
Jie Xu ◽  
Gengyun Zhang ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Transposable Element ◽  
Transposable Element Insertion ◽  
Element Insertion ◽  
Genome Wide

scholarly journals A Recent Adaptive Transposable Element Insertion Near Highly Conserved Developmental Loci in Drosophila melanogaster

2009 ◽  
Vol 26 (9) ◽  
pp. 1949-1961 ◽  
Author(s):  
J. Gonzalez ◽  
J. M. Macpherson ◽  
D. A. Petrov
Keyword(s):  
Drosophila Melanogaster ◽  
Transposable Element ◽  
Transposable Element Insertion ◽  
Element Insertion

scholarly journals hobo enhancer trapping mutagenesis in Drosophila reveals an insertion specificity different from P elements.

Genetics ◽  
1993 ◽  
Vol 135 (4) ◽  
pp. 1063-1076 ◽  
Author(s):  
D Smith ◽  
J Wohlgemuth ◽  
B R Calvi ◽  
I Franklin ◽  
W M Gelbart
Keyword(s):  
Drosophila Melanogaster ◽  
Transposable Element ◽  
Enhancer Trap ◽  
P Element ◽  
Present Evidence ◽  
P Elements ◽  
Element Insertion ◽  
Enhancer Trapping ◽  
Indispensable Tool

Abstract P element enhancer trapping has become an indispensable tool in the analysis of the Drosophila melanogaster genome. However, there is great variation in the mutability of loci by these elements such that some loci are relatively refractory to insertion. We have developed the hobo transposable element for use in enhancer trapping and we describe the results of a hobo enhancer trap screen. In addition, we present evidence that a hobo enhancer trap element has a pattern of insertion into the genome that is different from the distribution of P elements in the available database. Hence, hobo insertion may facilitate access to genes resistant to P element insertion.

scholarly journals RNA splicing permits expression of a maize gene with a defective Suppressor-mutator transposable element insertion in an exon.

1987 ◽  
Vol 84 (16) ◽  
pp. 5863-5867 ◽  
Author(s):  
H. Y. Kim ◽  
J. W. Schiefelbein ◽  
V. Raboy ◽  
D. B. Furtek ◽  
O. E. Nelson
Keyword(s):  
Transposable Element ◽  
Rna Splicing ◽  
Transposable Element Insertion ◽  
Element Insertion ◽  
Maize Gene

A transposable element insertion disturbed starch synthase gene SSIIb in maize

2014 ◽  
Vol 34 (3) ◽  
pp. 1159-1171 ◽  
Author(s):  
Huanhuan Liu ◽  
Hangqin Liu ◽  
Lai Wei ◽  
Xiaohong Yang ◽  
Zhongwei Lin
Keyword(s):  
Transposable Element ◽  
Starch Synthase ◽  
Transposable Element Insertion ◽  
Element Insertion

scholarly journals Gene Expression Variation inDrosophila melanogasterDue to Rare Transposable Element Insertion Alleles of Large Effect

Genetics ◽  
2014 ◽  
Vol 199 (1) ◽  
pp. 85-93 ◽  
Author(s):  
Julie M. Cridland ◽  
Kevin R. Thornton ◽  
Anthony D. Long
Keyword(s):  
Gene Expression ◽  
Transposable Element ◽  
Transposable Element Insertion ◽  
Gene Expression Variation ◽  
Expression Variation ◽  
Element Insertion

scholarly journals Allopolyploidy has a moderate impact on restructuring at three contrasting transposable element insertion sites in resynthesizedBrassica napusallotetraploids

2013 ◽  
Vol 198 (2) ◽  
pp. 593-604 ◽  
Author(s):  
Véronique Sarilar ◽  
Paulina Martinez Palacios ◽  
Agnès Rousselet ◽  
Céline Ridel ◽  
Matthieu Falque ◽  
...  
Keyword(s):  
Transposable Element ◽  
Transposable Element Insertion ◽  
Element Insertion ◽  
Insertion Sites

scholarly journals Modulating signaling networks by CRISPR/Cas9-mediated transposable element insertion

2017 ◽  
Vol 64 (2) ◽  
pp. 405-412 ◽  
Author(s):  
Luis María Vaschetto
Keyword(s):  
Transposable Element ◽  
Signaling Networks ◽  
Transposable Element Insertion ◽  
Element Insertion

scholarly journals Structural variants and selective sweep foci contribute to insecticide resistance in the Drosophila melanogaster genetic reference panel

2018 ◽  
Author(s):  
Paul Battlay ◽  
Llewellyn Green ◽  
Pontus B. Leblanc ◽  
Joshua M. Schmidt ◽  
Alexandre Fournier-Level ◽  
...  
Keyword(s):  
Drosophila Melanogaster ◽  
Transposable Element ◽  
Selective Sweep ◽  
Association Studies ◽  
Transcript Abundance ◽  
Reference Panel ◽  
Drosophila Genome ◽  
Genome Wide Association Studies ◽  
Genome Wide ◽  
Number Variation

AbstractPatterns of nucleotide polymorphism within populations of Drosophila melanogaster suggest that insecticides have been the selective agents driving the strongest recent bouts of positive selection. However, there is a need to explicitly link selective sweep loci to the particular insecticide phenotypes that could plausibly account for the drastic selective responses that are observed in these non-target insects. Here, we screen the Drosophila Genetic Reference Panel with two common insecticides; malathion (an organophosphate) and permethrin (a pyrethroid). Genome wide association studies map ‘survival-on-malathion’ to two of the largest sweeps in the D. melanogaster genome; Ace and Cyp6g1. Malathion survivorship also correlates with lines which have high levels of Cyp12d1 and Jheh1 and Jheh2 transcript abundance. Permethrin phenotypes map to the largest cluster of P450 genes in the Drosophila genome, however in contrast to a selective sweep driven by insecticide use, the derived state seems to be associated with susceptibility. These results underscore previous findings that highlight the importance of structural variation to insecticide phenotypes: Cyp6g1 exhibits copy number variation and transposable element insertions, Cyp12d1 is tandemly duplicated, the Jheh loci are associated with a Bari1 transposable element insertion, and a Cyp6a17 deletion is associated with susceptibility.

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