scholarly journals Male linked genomic region determines sex in dioecious Amaranthus palmeri

2020 ◽  
Author(s):  
Cátia José Neves ◽  
Maor Matzrafi ◽  
Meik Thiele ◽  
Anne Lorant ◽  
Mohsen B Mesgaran ◽  
...  
Keyword(s):  
Sex Determination ◽  
Genetic Control ◽  
Y Chromosome ◽  
Weed Management ◽  
Draft Genome ◽  
Amaranthus Palmeri ◽  
Specific Sequence ◽  
Male And Female ◽  
Evolutionary State ◽  
Male Specific

Abstract Dioecy, the separation of reproductive organs on different individuals, has evolved repeatedly in different plant families. Several evolutionary paths to dioecy have been suggested, but the mechanisms behind sex determination is not well understood. The diploid dioecious Amaranthus palmeri represents a well suited model system to study sex determination in plants. Despite the agricultural importance of the species, the genetic control and evolutionary state of dioecy in A. palmeri is currently unknown. Early cytogenetic experiments did not identify heteromorphic chromosomes. Here, we used whole genome sequencing of male and female pools from two independent populations to elucidate the genetic control of dioecy in A. palmeri. Read alignment to a close monoecious relative and allele frequency comparisons between male and female pools did not reveal significant sex linked genes. Consequently, we employed an alignment free k-mer comparison which enabled us to identify a large number of male specific k-mers. We assembled male specific contigs comprising a total of almost 2 Mb sequence, proposing a XY sex determination system in the species. We were able to identify the potential Y chromosome in the A. palmeri draft genome sequence as 90 % of our male specific sequence aligned to a single scaffold. Based on our findings we suggest an intermediate evolutionary state of dioecy with a young Y chromosome in A. palmeri. Our findings give insight into the evolution of sex chromosomes in plants and may help to develop sustainable strategies for weed management.

scholarly journals Male linked genomic regions determine sex in dioecious Amaranthus palmeri

2020 ◽  
Author(s):  
Cátia José Neves ◽  
Maor Matzrafi ◽  
Meik Thiele ◽  
Anne Lorant ◽  
Mohsen B. Mesgaran ◽  
...  
Keyword(s):  
Sex Determination ◽  
Genetic Control ◽  
Weed Management ◽  
Reproductive Organs ◽  
Amaranthus Palmeri ◽  
Male And Female ◽  
Evolutionary State ◽  
Plant Families ◽  
Sex Determination System ◽  
Male Specific

Dioecy, the separation of reproductive organs on different individuals, has evolved repeatedly in different plant families. Several evolutionary paths to dioecy have been suggested, but the mechanisms behind sex determination is not well understood. The diploid dioecious Amaranthus palmeri represents a well suited model system to study sex determination in plants. A. palmeri is one of the most troublesome weeds in the US, has successfully colonized other regions in the world and has evolved resistance to several herbicide classes. Despite the agricultural importance of the species, the genetic control and evolutionary state of dioecy in A. palmeri is currently unknown. Early cytogenetic experiments did not identify heteromorphic chromosomes. Here, we used whole genome sequencing of male and female pools from two independent populations to elucidate the genetic control of dioecy in A. palmeri. Read alignment to a close monoecious relative and allele frequency comparisons between male and female pools did not reveal significant sex linked genes. Consequently, we employed an alignment free k-mer comparison which enabled us to identify a large number of male specific k-mers. We assembled male specific contigs comprising a total of almost 2 Mb sequence, proposing a XY sex determination system in the species. Based on our findings we suggest an intermediate evolutionary state of dioecy in A. palmeri. Our findings give insight into the evolution of sex chromosomes in plants and may help to develop sustainable strategies for weed management.

SEX AND SUPERNUMERARY CHROMOSOMES IN THE DIOECIOUS GRASS SOHNSIA FILIFOLIA

1972 ◽  
Vol 14 (1) ◽  
pp. 175-180 ◽  
Author(s):  
D. N. Singh
Keyword(s):  
Sex Determination ◽  
Y Chromosome ◽  
Supernumerary Chromosome ◽  
The Other ◽  
Male Plant ◽  
Diploid Male ◽  
Male And Female ◽  
Supernumerary Chromosomes ◽  
Determination System ◽  
Sex Determination System

A dioecious grass Sohnsia filifolia (Fourn.) Airy Shaw (Syn. Calamochloa filifolia Fourn.) from Mexico has been found to have 2n = 20 chromosomes in both male and female plants. The staminate plants have one chromosome much longer than the other chromosomes of the complement. One pistillate plant was found to have 30 chromosomes, among which the largest chromosome is quite similar to the largest component of the diploid male plant. The longest chromosome has been designated as the Y chromosome. An XY-mechanism of the Drosophilia type has been suggested for the sex determination system in this species. One small supernumerary chromosome was observed in the microsporocytes of some male plants, but was absent in roots.

Clues from other animals and theoretical considerations

Development ◽  
1987 ◽  
Vol 101 (Supplement) ◽  
pp. 3-4
Author(s):  
Anne McLaren
Keyword(s):  
Sex Determination ◽  
Genetic Control ◽  
Y Chromosome ◽  
X Chromosome ◽  
X Chromosomes ◽  
The Third ◽  
Mouse Species ◽  
Primary Male ◽  
Theoretical Considerations ◽  
State Of Activity

In the first two papers of this volume, the genetic control of sex determination in Caenorhabditis and Drosophila is reviewed by Hodgkin and by Nöthiger & Steinmarin-Zwicky, respectively. Sex determination in both cases depends on the ratio of X chromosomes to autosomes, which acts as a signal to a cascade of règulatory genes located either on autosomes or on the X chromosome. The state of activity of the last gene in the sequence determines phenotypic sex. In the third paper, Erickson & Tres describe the structure of the mouse Y chromosome and the polymorphisms that have been detected in different mouse species and strains. As in all mammals, the Y carries the primary male-determining locus; autosomal genes may also be involved in sex determination, but they must act down-stream from the Y-linked locus.

Identification of sex in hop (Humulus lupulus) using molecular markers

Genome ◽  
1997 ◽  
Vol 40 (3) ◽  
pp. 357-361 ◽  
Author(s):  
Andreas Polley ◽  
Martin W. Ganal ◽  
Elisabeth Seigner
Keyword(s):  
Molecular Markers ◽  
Y Chromosome ◽  
Dna Sequences ◽  
Sex Chromosome ◽  
Rapid Identification ◽  
Humulus Lupulus ◽  
Specific Product ◽  
Male And Female ◽  
Cultivated Plant ◽  
Male Specific

The rapid identification of sex in the dioecious hop (Humulus lupulus) is important for the breeding of this cultivated plant because only unfertilized flowers of the female plants are used as an ingredient in the production of beer. It is thought that a sex-chromosome mechanism controls the development of male or female plants. We have compared pools of male and female plants derived from a hop cross to identify molecular markers associated with the Y or male-specific chromosome. Of 900 functional RAPD primers, 32 revealed fragments specific for male plants that were absent in female plants of this cross. Subsequently, the 32 positive primers were tested on unrelated male and female plants. Three of these 32 primers were specific for the Y chromosome in all lines. The Y-specific product derived from one of these primers (OPJ9) was of low copy in hybridization experiments and predominantly present in male plants. Primers developed from the DNA sequence of this product provide a marker for rapid sex identification in crosses of hop by means of PCR.Key words: chromosomes, RAPD, sex-specific DNA sequences, plant breeding, Y chromosome.

scholarly journals AL-QUR'AN DAN MATERIAL GENETIK DALAM SEL KELAMIN PRIA PENENTU JENIS KELAMIN BAYI

2018 ◽  
Vol 8 (2) ◽  
pp. 141-162
Author(s):  
Bayyinatul Muchtaromah
Keyword(s):  
Molecular Biology ◽  
Sex Determination ◽  
Y Chromosome ◽  
X Chromosome ◽  
Seventh Century ◽  
The Other ◽  
Male And Female

In many verses of al-Qur'an, men are called to pay their attention to understand how they were created. Human creation and incredible aspects followed were strongly mentioned in many verses in detail until it's impossible for anyone who lived in the seventh century to recognize it. One of them was the information saying that the determinant of baby gender is the spermatozoa coming from men sperm. Allah said in his verse: "and that He (Allah) creates in pairs, male and female. From Nutfah (drops of semen male and female discharge) when it is emitted" (translation of al-Qur'an 53 verse 45-46). Branches of knowledge which have developed, such as Genetics and Molecular Biology, have proved scientifically the information accuracy which has been given by al-Qur'an. Nowadays it has been well-known that sex determination is determined by sperm of man and in fact women play no roles in this determination. If the ovum fuses with sperm which carries Y chromosome than the baby will be born as a male. Conversely, if the sperm carries X chromosome than the baby will be a female. In the other word, the sex of the baby is determined by the kind of man's sperm chromosome which fuses with women's ovum.

H-Y antigen and sex determination

1988 ◽  
Vol 322 (1208) ◽  
pp. 73-81 ◽  
Keyword(s):  
Sex Determination ◽  
Y Chromosome ◽  
Original Description ◽  
Specific Factor ◽  
Female Gonad ◽  
Cell Stage ◽  
Stage Of Development ◽  
Development Data ◽  
Male Skin ◽  
Male Specific

The primary development of a male rather than a female gonad in mammals is determined by the presence of a Y chromosome. The other property unique to the Y chromosome is the occurrence of a cell-surface antigen (designated H-Y) which distinguishes male from female. Thus it was determined that male grafts were rejected by otherwise histocompatible females of the same inbred strain and later that H-Y-specific cytolytic T cells were produced by these grafted mice. When it was determined that females grafted with male skin produced antibody defining a serologically detectable male antigen (which may or may not be the same as H-Y), further immunogenetic analysis of this antigenic system became possible in terms of humoral and cellular factors. By using this assay it was demonstrated that the antigen was phylogenetically conserved and that it was expressed in the male mouse embryo as early as the 8-cell stage of development. The notion that H-Y was a single molecular species responsible for triggering the indifferent gonad to differentiate into the testis became a widely accepted hypothesis. In this report the H-Y antigenic system is traced historically from its original description to the role played in testis development. Data are presented which suggest that although H-Y is a male-specific factor and may play a role in male sex determination, it is unlikely that it is the primary inducer of testis differentiation.

Sex determination in mice: Y and chromosome 17 interactions

Development ◽  
1987 ◽  
Vol 101 (Supplement) ◽  
pp. 25-32
Author(s):  
Robert P. Erickson ◽  
Edward J. Durbin ◽  
Laura L. Tres
Keyword(s):  
Sex Determination ◽  
Y Chromosome ◽  
Dna Sequences ◽  
Sex Differentiation ◽  
Specific Antigen ◽  
Inbred Strains ◽  
Chromosome 17 ◽  
Male Sex ◽  
Male Specific ◽  
Type Chromosome

Mice provide material for studies of Y-chromosomal and autosomal sequences involved in sex determination. Eicher and coworkers have identified four subregions in the mouse Y chromosome, one of which corresponds to the Sxr fragment. This fragment demonstrates that only a small portion of the Y is necessary for male sex determination. The mouse Y chromosome also shows variants: the BALB/cWt Y chromosome, which causes nondisjunction of the Y in some germ cells leading to XO and XYY cells and resulting in many infertile true hermaphrodites; the YDom, a wild-type chromosome which can result in sex reversal on a C57BL/6J background; and Y-chromosomal variants detected with Y-derived genomic DNA clones among inbred strains. Two different autosomal loci affecting sex differentiation have been identified in the mouse by Eicher and coworkers. The first of these has not been mapped to a particular chromosome and has been designated Tda-1 (Testis-determining autosomal-1). This is the locus in C57BL/6J mice at which animals must be homozygous in order to develop as true hermaphrodites or sex-reversed animals in the presence of YDom. The other locus has been identified on proximal chromosome 17. This locus also caused hermaphrodites on the C57BL/6J background and it is most easily interpreted as a locus deleted in 7hp. It is located in a region on chromosome 17 containing other genes or DNA sequences that may be related to sex determination. These include both the Hye (histocompatibility Y expression) locus that affects the amount of male-specific antigen detected by serological and cell-mediated assays and a concentration of Bkm sequences. Despite the Y and chromosomal 17 localizations of Bkm sequences, there is no evidence that transcripts from these are involved in sex determination: RNA hybridizing to sense and anti-sense Bkm clones can be detected in day-14 fetal gonads of both sexes.

scholarly journals Divergence and Remarkable Diversity of the Y Chromosome in Guppies

2020 ◽  
Author(s):  
Pedro Almeida ◽  
Benjamin A Sandkam ◽  
Jake Morris ◽  
Iulia Darolti ◽  
Felix Breden ◽  
...  
Keyword(s):  
Y Chromosome ◽  
Sex Chromosomes ◽  
Sex Chromosome ◽  
Haplotype Diversity ◽  
Low Frequency ◽  
Color Variation ◽  
Recombination Suppression ◽  
Specific Sequence ◽  
Y Chromosome Evolution ◽  
Male Specific

Abstract The guppy sex chromosomes show an extraordinary diversity in divergence across populations and closely related species. In order to understand the dynamics of the guppy Y chromosome, we used linked-read sequencing to assess Y chromosome evolution and diversity across upstream and downstream population pairs that vary in predator and food abundance in three replicate watersheds. Based on our population-specific genome assemblies, we first confirmed and extended earlier reports of two strata on the guppy sex chromosomes. Stratum I shows significant accumulation of male-specific sequence, consistent with Y divergence, and predates the colonization of Trinidad. In contrast, Stratum II shows divergence from the X, but no Y-specific sequence, and this divergence is greater in three replicate upstream populations compared with their downstream pair. Despite longstanding assumptions that sex chromosome recombination suppression is achieved through inversions, we find no evidence of inversions associated with either Stratum I or Stratum II. Instead, we observe a remarkable diversity in Y chromosome haplotypes within each population, even in the ancestral Stratum I. This diversity is likely due to gradual mechanisms of recombination suppression, which, unlike an inversion, allow for the maintenance of multiple haplotypes. In addition, we show that this Y diversity is dominated by low-frequency haplotypes segregating in the population, suggesting a link between haplotype diversity and female preference for rare Y-linked color variation. Our results reveal the complex interplay between recombination suppression and Y chromosome divergence at the earliest stages of sex chromosome divergence.

scholarly journals Divergence and Remarkable Diversity of the Y Chromosome in Guppies

2020 ◽  
Author(s):  
Pedro Almeida ◽  
Benjamin A. Sandkam ◽  
Jake Morris ◽  
Iulia Darolti ◽  
Felix Breden ◽  
...  
Keyword(s):  
Y Chromosome ◽  
Sex Chromosomes ◽  
Sex Chromosome ◽  
Haplotype Diversity ◽  
Low Frequency ◽  
Recombination Suppression ◽  
Specific Sequence ◽  
Y Chromosome Evolution ◽  
Male Specific ◽  
Genome Assemblies

AbstractThe guppy sex chromosomes show an extraordinary diversity in divergence across populations and closely related species. In order to understand the dynamics of the guppy Y chromosome, we used linked-read sequencing to assess Y chromosome evolution and diversity across upstream and downstream population pairs that vary in predator and food abundance in three replicate watersheds. Based on our population-specific genome assemblies, we first confirmed and extended earlier reports of two strata on the guppy sex chromosomes. Stratum I shows significant accumulation of male-specific sequence, consistent with Y divergence, and predates the colonization of Trinidad. In contrast, Stratum II shows divergence from the X, but no Y-specific sequence, and this divergence is greater in three replicate upstream populations compared to their downstream pair. Despite longstanding assumptions that sex chromosome recombination suppression is achieved through inversions, we find no evidence of inversions associated with either Stratum I or Stratum II. Instead, we observe a remarkable diversity in Y chromosome haplotypes within each population, even in the ancestral Stratum I. This diversity is likely due to gradual mechanisms of recombination suppression, which, unlike an inversion, allow for the maintenance of multiple haplotypes. In addition, we show that this Y diversity is dominated by low-frequency haplotypes segregating in the population, suggesting a link between haplotype diversity and female-preference for rare Y-linked colour variation. Our results reveal the complex interplay between recombination suppression and Y chromosome divergence at the earliest stages of sex chromosome divergence.

scholarly journals The Snakeskin Gourami (Trichopodus pectoralis) Tends to Exhibit XX/XY Sex Determination

Fishes ◽  
2021 ◽  
Vol 6 (4) ◽  
pp. 43
Author(s):  
Thitipong Panthum ◽  
Nararat Laopichienpong ◽  
Ekaphan Kraichak ◽  
Worapong Singchat ◽  
Dung Ho My Nguyen ◽  
...  
Keyword(s):  
Sex Differences ◽  
Sex Determination ◽  
Y Chromosome ◽  
Cytogenetic Analysis ◽  
Genotyping By Sequencing ◽  
Sexually Dimorphic ◽  
Determination System ◽  
Sex Determination System ◽  
Male Specific ◽  
Determination Mechanism

The snakeskin gourami (Trichopodus pectoralis) has a high meat yield and is one of the top five aquaculture freshwater fishes in Thailand. The species is not externally sexually dimorphic, and its sex determination system is unknown. Understanding the sex determination system of this species will contribute to its full-scale commercialization. In this study, a cytogenetic analysis did not reveal any between-sex differences in chromosomal patterns. However, we used genotyping-by-sequencing to identify 4 male-linked loci and 1 female-linked locus, indicating that the snakeskin gourami tends to exhibit an XX/XY sex determination system. However, we did not find any male-specific loci after filtering the loci for a ratio of 100:0 ratio of males:females. This suggests that the putative Y chromosome is young and that the sex determination region is cryptic. This approach provides solid information that can help identify the sex determination mechanism and potential sex determination regions in the snakeskin gourami, allowing further investigation of genetic improvements in the species.

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