scholarly journals Habitat quality versus spatial variables as determinants of small mammal assemblages in Atlantic Forest fragments

2015 ◽  
Vol 97 (1) ◽  
pp. 253-265 ◽  
Author(s):  
Ana C. Delciellos ◽  
Marcus V. Vieira ◽  
Carlos E. V. Grelle ◽  
Priscilla Cobra ◽  
Rui Cerqueira

Abstract Fragment size, isolation, and matrix properties have received considerable attention as predictors of species richness, abundance, and composition in habitat patches. However, measurements of habitat attributes or habitat quality are more directly related to the proximate effects of habitat fragmentation and may be more determinant of assemblages than traditional explanatory variables at local scales. We determine how habitat structure in fragments—a measure of habitat quality—compares to fragment size, isolation, and matrix properties as determinants of richness, abundance, and composition of non-volant small mammals in a fragmented landscape of Atlantic Forest. Small mammals were surveyed once in 25 fragments in the Macacu River watershed, Rio de Janeiro, Brazil, from 1999 to 2001 and 2005 to 2009. A total of 83 candidate models were formulated and compared by Akaike Information Criteria. Habitat structure was one of the main determinants of small mammal assemblages in fragments, as important as fragment isolation for species composition and climatic season for species richness. Rodents were more abundant in fragments with increased overstory and understory vegetation density and more fallen logs. The contrary pattern was found for overall species richness and for species of terrestrial habit, which were more abundant in fragments with more open forest: decreased overstory and understory vegetation density and less fallen logs. Habitat quality in fragments may be a more important determinant of assemblages of small mammals and other vertebrates than previously considered in landscape and land use studies. O tamanho e isolamento dos fragmentos e as propriedades da matriz têm recebido considerável atenção como preditores da riqueza, abundância e composição de espécies em manchas de habitat. Entretanto, medidas dos atributos do habitat ou da qualidade do habitat são mais diretamente relacionadas aos efeitos imediatos da fragmentação de habitat, e seriam mais determinantes das comunidades do que as variáveis explicativas tradicionais. Determinamos como a estrutura do habitat nos fragmentos—uma medida da qualidade do habitat—se compara ao tamanho e isolamento dos fragmentos, e às propriedades da matriz como determinantes da riqueza, abundância e composição de espécies de pequenos mamíferos não-voadores em uma paisagem fragmentada de Mata Atlântica. Os pequenos mamíferos foram amostrados uma vez em 25 fragmentos na Bacia do Rio Macacu, Rio de Janeiro, Brasil, de 1999 a 2001 e de 2005 a 2009. Um total de 83 modelos foram formulados e comparados utilizando o Critério de Informação de Akaike. A estrutura do habitat foi um dos principais determinantes das comunidades de pequenos mamíferos nos fragmentos de mata, tão importante quanto o isolamento entre fragmentos para a composição de espécies e os efeitos das estações climáticas sobre a riqueza de espécies. Os roedores foram mais abundantes nos fragmentos com estratificação vertical e sub-bosque mais densos e com maior presença de troncos caídos. O padrão contrário foi encontrado para a riqueza total de espécies e para espécies de hábito terrestre, que foram mais abundantes em fragmentos com estratificação vertical e sub-bosque menos densos e menor presença de troncos caídos. A qualidade do habitat em fragmentos pode ser determinante das comunidades de pequenos mamíferos e outros vertebrados, mais importante do que considerado previamente em estudos de paisagens e uso da terra.

2018 ◽  
Vol 35 ◽  
pp. 1-12
Author(s):  
Rosana Gentile ◽  
Thiago S. Cardoso ◽  
Sócrates F. Costa-Neto ◽  
Bernardo R. Teixeira ◽  
Paulo S. D'Andrea

The Atlantic Forest is one of the most disturbed Brazilian biomes, with 183 out of 298 species of mammals occurring in the state of Rio de Janeiro. In this study, we aimed to characterize the diversity, community structure, and habitat use of small mammals in the FIOCRUZ Atlantic Forest Campus (CFMA), including areas of Pedra Branca State Park (PBSP, subunit Pau da Fome), state of Rio de Janeiro. We also compared species diversity and composition between two moments 15 years apart (2001 and 2012–2015) and analyzed the population dynamics of the marsupial Didelphisaurita (Wied-Neuwied, 1826). Small mammal captures were made in different habitats: sylvatic-urban interface areas near human dwellings, disturbed forest, and preserved forest areas. Five marsupial species and four rodent species were captured in both periods. There was a reduction in species richness and β diversity between the two periods, indicating that disturbances in the environment over the years may have affected the small mammal community structure. The most altered environment showed the greatest species richness and abundance, while the forest areas showed the smallest values, which may be explained by the loss of mammal species, mainly specialist species in forested areas. We identified three groups of species according to habitat preferences: one related to environments with a higher density of vegetation in upper strata – Marmosaparaguayana (Tate, 1931) and Monodelphisamericana (Müller, 1776), another related to a higher density in lower forest strata – Akodoncursor (Winge, 1887), and another with no association with the investigated habitat variables – D.aurita and Oligoryzomysnigripes (Olfers, 1818). The small mammal community structure showed a low level of nestedness in both sampling periods. This study is the first report to evaluate the community structure of small mammals in the sylvatic-urban interface area of Pedra Branca State Park, the largest forest reserve within an urban area in Brazil. The surveys indicate that the small mammal diversity was low in both sampling periods and in both areas, and a species loss in the Pau da Fome locality was observed, despite it is a conservation unit. The greater species abundance and richness in the most disturbed areas suggest an increase of factors favoring the occurrence of synanthropic and opportunistic species.


2020 ◽  
Vol 36 (3) ◽  
pp. 101-108
Author(s):  
Daniele Pereira Rodrigues ◽  
Fabrício Luiz Skupien ◽  
Jady de Oliveira Sausen ◽  
Daniela Oliveira de Lima

AbstractSmall mammals can be used as environmental indicators and have been intensively studied in fragmented landscapes of Atlantic Forest, with a wide range of field methods. Our aim in this study was two-fold: we tested for the effects of methods and for the effects of the main environmental variables on observed small mammal richness in fragments of Atlantic Forest. We gathered information on small mammal richness, methods and environmental variables from 122 fragments of Atlantic Forest through literature review. These data were analysed using linear models and model selection based on AIC values along with a regression tree analysis. We found that studies will record more species with bigger trapping effort, using pitfall traps and sampling all forest strata. We also confirmed two important ecological assumptions: fragments at lower latitudes and bigger fragments were the ones with higher species richness. Methodological and environmental variables were analysed together on a regression tree, where trapping effort was the most important variable, surpassing any environmental effect. Considering that a significant number of the studies on Atlantic Forest fragments did not use pitfall traps or sample all forest strata, their results on forest fragmentation were affected by sampling bias.


2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Sarah A. Boyle ◽  
Noé U. de la Sancha ◽  
Pastor Pérez ◽  
David Kabelik

AbstractSpecies that live in degraded habitats often show signs of physiological stress. Glucocorticoid hormones (e.g., corticosterone and cortisol) are often assessed as a proxy of the extent of physiological stress an animal has experienced. Our goal was to quantify glucocorticoids in free-ranging small mammals in fragments of Interior Atlantic Forest. We extracted glucocorticoids from fur samples of 106 small mammals (rodent genera Akodon and Oligoryzomys, and marsupial genera Gracilinanus and Marmosa) from six forest fragments (2–1200 ha) in the Reserva Natural Tapytá, Caazapá Department, Paraguay. To our knowledge, this is the first publication of corticosterone and cortisol levels for three of the four sampled genera (Akodon, Oligoryzomys, and Marmosa) in this forest system. We discovered three notable results. First, as predicted, glucocorticoid levels were higher in individuals living withing small forest fragments. Second, animals captured live using restraint trapping methods (Sherman traps) had higher glucocorticoid levels than those animals captured using kill traps (Victor traps), suggesting that hair glucocorticoid measures can reflect acute stress levels in addition to long-term glucocorticoid incorporation. These acute levels are likely due to urinary steroids diffusing into the hair shaft. This finding raises a concern about the use of certain trapping techniques in association with fur hormone analysis. Finally, as expected, we also detected genus-specific differences in glucocorticoid levels, as well as cortisol/corticosterone ratios.


2020 ◽  
Vol 47 (6) ◽  
pp. 485
Author(s):  
Daniela Paula Montes de Oca ◽  
Martín Neyen Lammel ◽  
Regino Cavia

Abstract ContextPig production is increasing in developing countries and is increasing the coexistence of different production systems regarding management practices. Small mammals can cause major economic and sanitary problems on pig farms. The interactions among small mammals, production practices and habitat complexity have been sparsely studied. AimsThe aim was to compare small-mammal assemblages on extensive and intensive pig-production systems, and to analyse the relationship with environmental characteristics and management practices. MethodsSeasonal live-trapping of small mammals within 18 farms (under intensive or extensive management) was performed in central Argentina, simultaneously with a survey of environmental and management practices. Multiple regression analyses were performed to assess the relation between infestation levels and environmental characteristics. Key results In total, 472 small mammals were captured, including the exotic murids Rattus norvegicus, R. rattus and Mus musculus, three native sigmodontines, namely, Akodon azarae, Oligoryzomys flavescens and Oxymycterus rufus, and two native marsupials, namely, Didelphis albiventris and Lutreolina crassicaudata. The location of waste deposits, the density of cats, the frequency of rodent control and the way pig food was stored influenced wild small-mammal abundance; exotic rodent species were lower when the density of cats increased. Rattus norvegicus was more abundant where rodent control was not frequent or null, contrary to M. musculus. Both species were more abundant in food and pig sheds, whereas native species were associated with vegetated areas outside of sheds. Also, A. azarae was associated with the density of pigs. Didelphis albiventris was more abundant on extensive farms, whereas L. crassicaudata was captured on intensive farms. Conclusions Small-mammal abundance did not respond to the type of production system per se, but exotic species abundance was influenced by management decisions. The most important human behaviours related to exotic rodent infestation were the possession of cats, the frequency of rodent control and the way waste and pig feed were managed. Implications Our findings highlighted the need for integrated studies on factors influencing the dynamics of rodent populations in commercial piggery systems, for the development of effective pest management. Management recommendations need to assess environmental complexity and human behaviour as important moderators of the population dynamics of small mammal species in and around piggeries.


2021 ◽  
Vol 40 (2) ◽  
pp. 1-15
Author(s):  
Farah Shafawati Mohd-Taib ◽  
Siti Nabilah Ishak

The ecological study of small mammals often uses the cage-trapping method, installed with baits. Capture rates vary according to different baits used. We want to determine the bait preferences by different small mammal groups. The cage-trapping approach used common domestic bait types available, namely, aromatic banana, sweet potato with peanut butter, oil palm fruit, dried salted fish, jackfruit, and roasted coconut flesh. Sampling was conducted in three different habitat categories, namely urban, semi-urban, and recreational forests, located in Selangor, Malaysia, for one year. A total of 537 small mammals from 15 species were sampled, which was then grouped into seven groups (i.e., Rattus sp., Maxomys sp., Sundamys sp., Leopaldamys sabanus, Suncus murinus, squirrels, and Tupaia glis). Bait preferences were significantly different among the different small mammal groups, i.e., F (6,35) = 5.621, p = 0.000, with bananas shown to be most preferred bait, followed by oil palm fruits and sweet potatoes. Non-metric multidimensional scaling (nMDS) analysis revealed that the Rattus species encompassed the most diverse bait preference, while S. murinus and L. sabanus were the most selective. Muridae preferred sweet potatoes with peanut butter over bananas, while Sciuridae and Tupaiidae preferred bananas, and Soricidae preferred dried salted fish. This study elucidates the most effective bait selection for different small mammal assemblages, serving as a guide to increase capture rates when sampling targeted population of small mammals. Apart from that, it is helpful for effective rodent pest control.


2019 ◽  
Vol 46 (8) ◽  
pp. 690 ◽  
Author(s):  
Helen P. Waudby ◽  
Sophie Petit ◽  
Matthew J. Gill

Abstract ContextTrapping design influences information collected about wildlife populations and biodiversity. Trapping is also resource-intensive and has animal welfare implications. AimsThe scientific, financial and ethical performances of three trap designs were compared for estimating diversity and sampling small vertebrates. MethodsSmall vertebrates were trapped over 16 trapping sessions, from April 2009 to May 2011, with aluminium box-style (Elliott) traps and two pitfall trap designs (shallow–wide and deep–narrow), in an arid environment. Key resultsShallow pitfalls recorded highest overall species richness (S=22) and diversity (qD=10.622), reptile diversity (qD=8.112) and reptile capture rates (13.600 individuals per 100 trap nights). Shallow and deep pitfalls sampled ~79.0% and 85.0% (respectively) more small mammals than did Elliott traps. Deep pitfalls sampled the greatest diversity (qD=6.017) and number (29.700 individuals per 100 trap nights) of small mammals, and captured the greatest number of small mammal species (0.003) and individuals (0.106) per dollar. Shallow pitfalls were the most cost-efficient trap type for sampling reptile species (0.003) and individuals (0.044) per dollar. Between-session recapture rates were greatest in Elliott traps, indicating an increased likelihood of biased capture rates for certain small mammal species over time. Elliott traps were the least efficient traps on most scientific and cost measures, and recorded the greatest overall recapture rates, particularly for Sminthopsis crassicaudata and S. macroura. Body size of one species only, the nationally threatened Pseudomys australis, influenced its capture rate, with larger individuals more likely to be caught in deep pitfalls. Mortality was highest in pitfalls and mostly related to interactions between animals caught in the same trap. Key conclusionsShallow pitfalls are suitable for studies focused on estimating species richness, and reptile diversity and abundance. Deep pitfalls are cost-effective for sampling small mammals. Ethical issues associated with pitfalls could be managed by checking traps more often at night, and/or including materials that provide increased protection from predators caught in the same trap, particularly during periods of high abundance. ImplicationsTrap design profoundly influences cost-effectiveness and welfare outcomes of wildlife research. We provide a tool to assist cost-benefit related decisions.


2007 ◽  
Vol 67 (1) ◽  
pp. 179-186 ◽  
Author(s):  
PS. D’Andrea ◽  
R. Gentile ◽  
LS. Maroja ◽  
FA. Fernandes ◽  
R. Coura ◽  
...  

This study reports 2 years of the population dynamics and reproduction of a small mammal community using the removal method. The study was conducted in a rural area of the Atlantic Forest, in Sumidouro, Rio de Janeiro State, Brazil. The population sizes, age structure and reproduction were studied for the four most common species in the study area. The overall diversity was 1.67 and ranged between 0.8 to 1.67. The species richness was 13 considering the whole study. The most abundant species were the rodents Nectomys squamipes (n = 133), Akodon cursor (n = 74), Oligoryzomys nigripes (n = 25) and the marsupials Didelphis aurita (n = 58) and Philander frenatus (n = 50). Seven other rodents were captured once: Necromys lasiurus, Akodon montensis, Sooretamys angouya, Oecomys catherine, Oxymycterus judex, Euryzygomatomys spinosus and Trinomys iheringi. There were higher peaks for diversity and species richness during the winter (dry) months, probably due to higher food availability. The marsupials had a seasonal reproduction with highest population sizes at the end of the rainy seasons. Nectomys squamipes reproduced mostly during rainy periods. Akodon cursor reproduced predominantly in the winter with the highest population peaks occurring during this season. The analysis of the population dynamics of the rodent species indicated that no species behaved as an agricultural pest, probably due to the heterogeneous landscape of high rotativity of vegetable cultivation. Rodent populations were more susceptible to the removal procedure than marsupial ones.


2021 ◽  
Vol 9 ◽  
Author(s):  
Ingrid de Mattos ◽  
Bárbara Zimbres ◽  
Jader Marinho-Filho

Landscape conversion of natural environments into agriculture and pasture are driving a marked biodiversity decline in the tropics. Consequences of fragmentation might depend upon habitat amount in the landscape, while the quality of remnants can also affect some species. These factors have been poorly studied in relation to different spatial scales. Furthermore, the impacts of these human-driven alterations may go beyond species loss, possibly causing a loss of ecosystem function and services. In this study, we investigated how changes in landscape configuration (patch size and isolation), habitat loss (considering a landscape gradient of 10, 25, and 40% of remnant forest cover), and habitat quality (forest structure) affect small mammal abundance, richness, taxonomic/functional diversity, and species composition in fragmented landscapes of semideciduous forests in the Brazilian Cerrado. Analyses were performed separately for habitat generalists and forest specialists. We live-trapped small mammals and measured habitat quality descriptors four times in 36 forest patches over the years 2018 and 2019, encompassing both rainy and dry seasons, with a total capture effort of 45,120 trap-nights. Regression analyses indicated that the effect of landscape configuration was not dependent on the proportion of habitat amount in the landscape to determine small mammal assemblages. However, both patch size and habitat loss impacted different aspects of the assemblages in distinct ways. Smaller patches were mainly linked to an overall increase in small mammal abundance, while the abundance of habitat generalists was also negatively affected by habitat amount. Generalist species richness was determined by the proportion of habitat amount in the landscape. Specialist richness was influenced by patch forest quality only, suggesting that species with more demanding habitat requirements might respond to fragmentation and habitat loss at finer scales. Taxonomic or functional diversity were not influenced by landscape structure or habitat quality. However, patch size and habitat amount in the landscape were the major drivers of change in small mammal species composition in semideciduous forests in the Brazilian savanna.


2020 ◽  
Vol 15 (3) ◽  
pp. 663-681
Author(s):  
Robert Owen

Many questions concerning habitat preferences of Neotropical small mammals remain unanswered. These questions include where the animal lives within and among the available habitats, and the temporal (seasonal and interannual) variation in the habitat associations. The objectives of this research were: (1) to determine the associations of non-volant small mammal species (Rodentia and Didelphimorphia) with specific microhabitat characteristics including vegetation structure in an area near the western boundary of the Upper Paraná Atlantic Forest, and (2) to evaluate seasonal and interannual variation in those associations. Three grids were sampled in three seasons (Dry, Wet, Variable) during two years (2015-2017). The four predominant small mammal species (Gracilinanus agilis, Akodon montensis, Hylaeamys megacephalus, and Oligoryzomys nigripes) were evaluated for seasonal and interannual variation in habitat preferences. Each of the four exhibited seasonal and/or interannual variation in microhabitat preferences for three to six of the 17 environmental variables analyzed. This is the first study to explicitly evaluate temporal variation in habitat associations of small mammals in the Atlantic Forest ecoregion. The temporal patterns of habitat association among these four predominant species reveal a complex spatially and temporally dynamic composition and structure in this small mammal community.


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