scholarly journals Toward structural and functional genomics of Agrobacterium tumefaciens: Linkage map of the left region of linear chromosome

2000 ◽  
Vol 44 (1) ◽  
pp. 97-98 ◽  
Author(s):  
D. M. De Costa ◽  
K. Suzuki ◽  
K. Yoshida
2001 ◽  
Vol 76 (6) ◽  
pp. 363-371 ◽  
Author(s):  
Devika M. De Costa ◽  
Katsunori Suzuki ◽  
Megumi Satou ◽  
Kazuo Yoshida

2019 ◽  
Vol 8 (45) ◽  
Author(s):  
Naxin Huo ◽  
Yong Gu ◽  
Kent F. McCue ◽  
Diaa Alabed ◽  
James G. Thomson

This work reports the draft genome sequence of Agrobacterium tumefaciens strain 1D1526. The assembled genome is composed of a 2,881,823-bp circular chromosome, a 2,235,711-bp linear chromosome, and a 44,582-bp unassembled contig.


2012 ◽  
Vol 79 (4) ◽  
pp. 1414-1417 ◽  
Author(s):  
Steven Slater ◽  
João C. Setubal ◽  
Brad Goodner ◽  
Kathryn Houmiel ◽  
Jian Sun ◽  
...  

ABSTRACTTwo groups independently sequenced theAgrobacterium tumefaciensC58 genome in 2001. We report here consolidation of these sequences, updated annotation, and additional analysis of the evolutionary history of the linear chromosome, which is apparently limited to the biovar I group ofAgrobacterium.


2004 ◽  
Vol 186 (20) ◽  
pp. 6824-6829 ◽  
Author(s):  
Sylvia Balsiger ◽  
Curdin Ragaz ◽  
Christian Baron ◽  
Franz Narberhaus

ABSTRACT Four genes coding for small heat shock proteins (sHsps) were identified in the genome sequence of Agrobacterium tumefaciens, one on the circular chromosome (hspC), one on the linear chromosome (hspL), and two on the pAT plasmid (hspAT1 and hspAT2). Induction of sHsps at elevated temperatures was revealed by immunoblot analyses. Primer extension experiments and translational lacZ fusions demonstrated that expression of the pAT-derived genes and hspL is controlled by temperature in a regulon-specific manner. While the sHsp gene on the linear chromosome turned out to be regulated by RpoH (σ32), both copies on pAT were under the control of highly conserved ROSE (named for repression of heat shock gene expression) sequences in their 5′ untranslated region. Secondary structure predictions of the corresponding mRNA strongly suggest that it represses translation at low temperatures by masking the Shine-Dalgarno sequence. The hspC gene was barely expressed (if at all) and not temperature responsive.


2006 ◽  
Vol 25 (7) ◽  
pp. 651-659 ◽  
Author(s):  
Shivendra Bajaj ◽  
Yidong Ran ◽  
Jonathan Phillips ◽  
Gunaseelan Kularajathevan ◽  
Sunil Pal ◽  
...  

1999 ◽  
Vol 181 (17) ◽  
pp. 5160-5166 ◽  
Author(s):  
Brad W. Goodner ◽  
Brian P. Markelz ◽  
M. Casey Flanagan ◽  
Chris B. Crowell ◽  
Jodi L. Racette ◽  
...  

ABSTRACT A combined genetic and physical map of the Agrobacterium tumefaciens A348 (derivative of C58) genome was constructed to address the discrepancy between initial single-chromosome genetic maps and more recent physical mapping data supporting the presence of two nonhomologous chromosomes. The combined map confirms the two-chromosome genomic structure and the correspondence of the initial genetic maps to the circular chromosome. The linear chromosome is almost devoid of auxotrophic markers, which probably explains why it was missed by genetic mapping studies.


1982 ◽  
Vol 188 (1) ◽  
pp. 12-17 ◽  
Author(s):  
P. J. J. Hooykaas ◽  
R. Peerbolte ◽  
A. J. G. Regensburg-Tuïnk ◽  
P. de Vries ◽  
R. A. Schilperoort

2020 ◽  
Vol 117 (42) ◽  
pp. 26366-26373
Author(s):  
J. S. Robalino-Espinosa ◽  
J. R. Zupan ◽  
A. Chavez-Arroyo ◽  
P. Zambryski

Agrobacterium tumefaciensC58 contains four replicons, circular chromosome (CC), linear chromosome (LC), cryptic plasmid (pAt), and tumor-inducing plasmid (pTi), and grows by polar growth from a single growth pole (GP), while the old cell compartment and its old pole (OP) do not elongate. We monitored the replication and segregation of these four genetic elements during polar growth. The three largest replicons (CC, LC, pAt) reside in the OP compartment prior to replication; post replication one copy migrates to the GP prior to division. CC resides at a fixed location at the OP and replicates first. LC does not stay fixed at the OP once the cell cycle begins and replicates from varied locations 20 min later than CC. pAt localizes similarly to LC prior to replication, but replicates before the LC and after the CC. pTi does not have a fixed location, and post replication it segregates randomly throughout old and new cell compartments, while undergoing one to three rounds of replication during a single cell cycle. Segregation of the CC and LC is dependent on the GP and OP identity factors PopZ and PodJ, respectively. Without PopZ, replicated CC and LC do not efficiently partition, resulting in sibling cells without CC or LC. Without PodJ, the CC and LC exhibit abnormal localization to the GP at the beginning of the cell cycle and replicate from this position. These data reveal PodJ plays an essential role in CC and LC tethering to the OP during early stages of polar growth.


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