scholarly journals The Impact of Graph Construction Scheme and Community Detection Algorithm on the Reliability of Community and Hub Identification in Structural Brain Networks

2020 ◽  
Author(s):  
Stavros I. Dimitriadis ◽  
Eirini Messaritaki ◽  
Derek K. Jones
Keyword(s):  
White Matter ◽  
Community Detection ◽  
Brain Networks ◽  
Detection Algorithm ◽  
Detection Algorithms ◽  
Construction Scheme ◽  
Human Connectome Project ◽  
Community Detection Algorithm ◽  
The Impact ◽  
The Brain

AbstractThe human brain is a complex network of volumes of tissue (nodes) that are interconnected by white matter tracts (edges). It can be represented as a graph to allow us to use graph theory to gain insight into normal human development and brain disorders. Most graph theoretical metrics measure either whole-network (global) or node-specific (local) properties of the network. However, a critical question in network neuroscience is how nodes cluster together to form communities, each of which possibly plays a specific functional role. Community partition analysis allows us to investigate the mesoscale organization of the brain. Various algorithms have been proposed in the literature, that allow the identification of such communities, with each algorithm resulting in different communities for the network. Those communities also depend on the method used to weigh the edges of the graphs representing the brain networks. In this work, we use the test-retest data from the Human Connectome Project to compare 32 such community detection algorithms, each paired with 7 graph construction schemes, and assess the reproducibility of the resulting community partitions.The reproducibility of community partition depended heavily on both the graph construction scheme and the community detection algorithm. Hard community detection algorithms, via which each node is assigned to only one community, outperformed soft ones, via which each node can be a part of more than one community. The best reproducibility was observed for the graph construction scheme that combines 9 white matter tract metrics paired with the greedy stability optimization algorithm, with either discrete or continuous Markovian chain. This graph-construction scheme / community detection algorithm pair also gave the highest similarity between representative group community affiliation and individual community affiliation. Connector hubs were better reproduced than provincial hubs.

Community detection in complex network by network embedding and density clustering

2021 ◽  
pp. 1-12
Author(s):  
JinFang Sheng ◽  
Huaiyu Zuo ◽  
Bin Wang ◽  
Qiong Li
Keyword(s):  
Complex Network ◽  
Community Detection ◽  
Dimensional Space ◽  
Detection Algorithm ◽  
Superior Performance ◽  
Network Embedding ◽  
Detection Algorithms ◽  
Density Clustering ◽  
Community Detection Algorithm ◽  
Low Dimensional

 In a complex network system, the structure of the network is an extremely important element for the analysis of the system, and the study of community detection algorithms is key to exploring the structure of the complex network. Traditional community detection algorithms would represent the network using an adjacency matrix based on observations, which may contain redundant information or noise that interferes with the detection results. In this paper, we propose a community detection algorithm based on density clustering. In order to improve the performance of density clustering, we consider an algorithmic framework for learning the continuous representation of network nodes in a low-dimensional space. The network structure is effectively preserved through network embedding, and density clustering is applied in the embedded low-dimensional space to compute the similarity of nodes in the network, which in turn reveals the implied structure in a given network. Experiments show that the algorithm has superior performance compared to other advanced community detection algorithms for real-world networks in multiple domains as well as synthetic networks, especially when the network data chaos is high.

Using bootstrap procedures for testing the modular partition inferred via leading eigenvector community detection algorithm

2021 ◽  
Author(s):  
Oksana Vertsimakha ◽  
Igor Dzeverin
Keyword(s):  
Community Detection ◽  
Detection Algorithm ◽  
Fine Tuning ◽  
Modular Structure ◽  
Biological Organization ◽  
Detection Algorithms ◽  
Community Detection Algorithm ◽  
Numeric Data ◽  
Bootstrap Algorithm ◽  
Modular Structures

AbstractModularity and modular structures can be recognized at various levels of biological organization and in various domains of studies. Recently, algorithms based on network analysis came into focus. And while such a framework is a powerful tool in studying modular structure, those methods usually pose a problem of assessing statistical support for the obtained modular structures. One of the widely applied methods is the leading eigenvector, or Newman’s spectral community detection algorithm. We conduct a brief overview of the method, including a comparison with some other community detection algorithms and explore a possible fine-tuning procedure. Finally, we propose an adapted bootstrap-based procedure based on Shimodaira’s multiscale bootstrap algorithm to derive approximately unbiased p-values for the module partitions of observations datasets. The proposed procedure also gives a lot of freedom to the researcher in constructing the network construction from the raw numeric data, and can be applied to various types of data and used in diverse problems concerning modular structure. We provide an R language code for all the calculations and the visualization of the obtained results for the researchers interested in using the procedure.

Recent trends on community detection algorithms: A survey

2020 ◽  
Vol 34 (35) ◽  
pp. 2050408
Author(s):  
Sumit Gupta ◽  
Dhirendra Pratap Singh
Keyword(s):  
Community Detection ◽  
Real Life ◽  
Detection Algorithm ◽  
Data Sets ◽  
Detection Algorithms ◽  
Life Problems ◽  
Application Data ◽  
Art Community ◽  
Community Detection Algorithm ◽  
Two Parameters

In today’s world scenario, many of the real-life problems and application data can be represented with the help of the graphs. Nowadays technology grows day by day at a very fast rate; applications generate a vast amount of valuable data, due to which the size of their representation graphs is increased. How to get meaningful information from these data become a hot research topic. Methodical algorithms are required to extract useful information from these raw data. These unstructured graphs are not scattered in nature, but these show some relationships between their basic entities. Identifying communities based on these relationships improves the understanding of the applications represented by graphs. Community detection algorithms are one of the solutions which divide the graph into small size clusters where nodes are densely connected within the cluster and sparsely connected across. During the last decade, there are lots of algorithms proposed which can be categorized into mainly two broad categories; non-overlapping and overlapping community detection algorithm. The goal of this paper is to offer a comparative analysis of the various community detection algorithms. We bring together all the state of art community detection algorithms related to these two classes into a single article with their accessible benchmark data sets. Finally, we represent a comparison of these algorithms concerning two parameters: one is time efficiency, and the other is how accurately the communities are detected.

scholarly journals A Neighborhood-Impact Based Community Detection Algorithm via Discrete PSO

2016 ◽  
Vol 2016 ◽  
pp. 1-15 ◽  
Author(s):  
Dongqing Zhou ◽  
Xing Wang
Keyword(s):  
Community Detection ◽  
Real Life ◽  
Detection Algorithm ◽  
Label Propagation ◽  
Detection Problem ◽  
Signed Networks ◽  
Discrete Pso ◽  
Community Detection Algorithm ◽  
Definition Of ◽  
The Impact

The paper addresses particle swarm optimization (PSO) into community detection problem, and an algorithm based on new label strategy is proposed. In contrast with other label propagation strategies, the main contribution of this paper is to design the definition of the impact of node and take it into use. Special initialization and update approaches based on it are designed in order to make full use of it. Experiments on synthetic and real-life networks show the effectiveness of proposed strategy. Furthermore, this strategy is extended to signed networks, and the corresponding objective function which is called modularity density is modified to be used in signed networks. Experiments on real-life networks also demonstrate that it is an efficacious way to solve community detection problem.

scholarly journals Evaluating the role of community detection in improving influence maximization heuristics

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
László Hajdu ◽  
Miklós Krész ◽  
András Bóta
Keyword(s):  
Community Detection ◽  
Real Life ◽  
Detection Algorithm ◽  
Influence Maximization ◽  
Overlapping Community Detection ◽  
Detection Algorithms ◽  
Overlapping Community ◽  
Community Detection Algorithm ◽  
The Cost

AbstractBoth community detection and influence maximization are well-researched fields of network science. Here, we investigate how several popular community detection algorithms can be used as part of a heuristic approach to influence maximization. The heuristic is based on the community value, a node-based metric defined on the outputs of overlapping community detection algorithms. This metric is used to select nodes as high influence candidates for expanding the set of influential nodes. Our aim in this paper is twofold. First, we evaluate the performance of eight frequently used overlapping community detection algorithms on this specific task to show how much improvement can be gained compared to the originally proposed method of Kempe et al. Second, selecting the community detection algorithm(s) with the best performance, we propose a variant of the influence maximization heuristic with significantly reduced runtime, at the cost of slightly reduced quality of the output. We use both artificial benchmarks and real-life networks to evaluate the performance of our approach.

Clustering Algorithm for Community Detection in Complex Network: A Comprehensive Review

2020 ◽  
Vol 13 (4) ◽  
pp. 542-549
Author(s):  
Smita Agrawal ◽  
Atul Patel
Keyword(s):  
Complex Network ◽  
Community Detection ◽  
Large Scale ◽  
Clustering Algorithm ◽  
Detection Algorithm ◽  
Connected Subgraph ◽  
Comprehensive Review ◽  
Detection Algorithms ◽  
Community Detection Algorithm ◽  
Large Scale Networks

Many real-world social networks exist in the form of a complex network, which includes very large scale networks with structured or unstructured data and a set of graphs. This complex network is available in the form of brain graph, protein structure, food web, transportation system, World Wide Web, and these networks are sparsely connected, and most of the subgraphs are densely connected. Due to the scaling of large scale graphs, efficient way for graph generation, complexity, the dynamic nature of graphs, and community detection are challenging tasks. From large scale graph to find the densely connected subgraph from the complex network, various community detection algorithms using clustering techniques are discussed here. In this paper, we discussed the taxonomy of various community detection algorithms like Structural Clustering Algorithm for Networks (SCAN), Structural-Attribute based Cluster (SA-cluster), Community Detection based on Hierarchical Clustering (CDHC), etc. In this comprehensive review, we provide a classification of community detection algorithm based on their approach, dataset used for the existing algorithm for experimental study and measure to evaluate them. In the end, insights into the future scope and research opportunities for community detection are discussed.

Gravitational community detection by predicting diameter

2021 ◽  
pp. 2150145
Author(s):  
Himansu Sekhar Pattanayak ◽  
Harsh K. Verma ◽  
Amrit Lal Sangal
Keyword(s):  
Community Detection ◽  
Ground Truth ◽  
Detection Algorithm ◽  
Local Information ◽  
Ground Truth Data ◽  
Overlapping Communities ◽  
Detection Algorithms ◽  
Np Hard Problem ◽  
Community Detection Algorithm ◽  
The Individual

Community detection is a pivotal part of network analysis and is classified as an NP-hard problem. In this paper, a novel community detection algorithm is proposed, which probabilistically predicts communities’ diameter using the local information of random seed nodes. The gravitation method is then applied to discover communities surrounding the seed nodes. The individual communities are combined to get the community structure of the whole network. The proposed algorithm, named as Local Gravitational community detection algorithm (LGCDA), can also work with overlapping communities. LGCDA algorithm is evaluated based on quality metrics and ground-truth data by comparing it with some of the widely used community detection algorithms using synthetic and real-world networks.

Network size, structure, and pathogen transmission: a simulation study comparing different community detection algorithms

Behaviour ◽  
2018 ◽  
Vol 155 (7-9) ◽  
pp. 639-670 ◽  
Author(s):  
Kelsey M. Sumner ◽  
Collin M. McCabe ◽  
Charles L. Nunn
Keyword(s):  
Community Detection ◽  
Disease Transmission ◽  
Size Structure ◽  
Disease Risk ◽  
Detection Algorithm ◽  
Network Size ◽  
Pathogen Transmission ◽  
Small Scale ◽  
Detection Algorithms ◽  
Community Detection Algorithm

Abstract Social substructure can influence pathogen transmission. Modularity measures the degree of social contact within versus between “communities” in a network, with increasing modularity expected to reduce transmission opportunities. We investigated how social substructure scales with network size and disease transmission. Using small-scale primate social networks, we applied seven community detection algorithms to calculate modularity and subgroup cohesion, defined as individuals’ interactions within subgroups proportional to the network. We found larger networks were more modular with higher subgroup cohesion, but the association’s strength varied by community detection algorithm and substructure measure. These findings highlight the importance of choosing an appropriate community detection algorithm for the question of interest, and if not possible, using multiple algorithms. Disease transmission simulations revealed higher modularity and subgroup cohesion resulted in fewer infections, confirming that social substructure has epidemiological consequences. Increased subdivision in larger networks could reflect constrained time budgets or evolved defences against disease risk.

Active semisupervised community detection based on asymmetric similarity measure

2015 ◽  
Vol 29 (13) ◽  
pp. 1550078 ◽  
Author(s):  
Mingwei Leng ◽  
Liang Huang ◽  
Longjie Li ◽  
Hanhai Zhou ◽  
Jianjun Cheng ◽  
...  
Keyword(s):  
Community Structure ◽  
Prior Knowledge ◽  
Complex Network ◽  
Community Detection ◽  
Detection Algorithm ◽  
Directed Network ◽  
Detection Algorithms ◽  
Community Detection Algorithm ◽  
Similarity Method ◽  
Asymmetric Similarity

Semisupervised community detection algorithms use prior knowledge to improve the performance of discovering the community structure of a complex network. However, getting those prior knowledge is quite expensive and time consuming in many real-world applications. This paper proposes an active semisupervised community detection algorithm based on the similarities between nodes. First, it transforms a given complex network into a weighted directed network based on the proposed asymmetric similarity method, some informative nodes are selected to be the labeled nodes by using an active mechanism. Second, the proposed algorithm discovers the community structure of a complex network by propagating the community labels of labeled nodes to their neighbors based on the similarity between a node and a community. Finally, the performance of the proposed algorithm is evaluated with three real networks and one synthetic network and the experimental results show that the proposed method has a better performance compared with some other community detection algorithms.

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