scholarly journals Cortical response to naturalistic stimuli is largely predictable with deep neural networks

2020 ◽  
Author(s):  
Meenakshi Khosla ◽  
Gia H. Ngo ◽  
Keith Jamison ◽  
Amy Kuceyeski ◽  
Mert R. Sabuncu

Naturalistic stimuli, such as movies, activate a substantial portion of the human brain, invoking a response shared across individuals. Encoding models that predict the neural response to a given stimulus can be very useful for studying brain function. However, existing neural encoding models focus on limited aspects of naturalistic stimuli, ignoring the complex and dynamic interactions of modalities in this inherently context-rich paradigm. Using movie watching data from the Human Connectome Project (HCP, N = 158) database, we build group-level models of neural activity that incorporate several inductive biases about information processing in the brain, including hierarchical processing, assimilation over longer timescales and multi-sensory auditory-visual interactions. We demonstrate how incorporating this joint information leads to remarkable prediction performance across large areas of the cortex, well beyond the visual and auditory cortices into multi-sensory sites and frontal cortex. Furthermore, we illustrate that encoding models learn high-level concepts that generalize remarkably well to alternate task-bound paradigms. Taken together, our findings underscore the potential of neural encoding models as a powerful tool for studying brain function in ecologically valid conditions.

2021 ◽  
Vol 7 (22) ◽  
pp. eabe7547
Author(s):  
Meenakshi Khosla ◽  
Gia H. Ngo ◽  
Keith Jamison ◽  
Amy Kuceyeski ◽  
Mert R. Sabuncu

Naturalistic stimuli, such as movies, activate a substantial portion of the human brain, invoking a response shared across individuals. Encoding models that predict neural responses to arbitrary stimuli can be very useful for studying brain function. However, existing models focus on limited aspects of naturalistic stimuli, ignoring the dynamic interactions of modalities in this inherently context-rich paradigm. Using movie-watching data from the Human Connectome Project, we build group-level models of neural activity that incorporate several inductive biases about neural information processing, including hierarchical processing, temporal assimilation, and auditory-visual interactions. We demonstrate how incorporating these biases leads to remarkable prediction performance across large areas of the cortex, beyond the sensory-specific cortices into multisensory sites and frontal cortex. Furthermore, we illustrate that encoding models learn high-level concepts that generalize to task-bound paradigms. Together, our findings underscore the potential of encoding models as powerful tools for studying brain function in ecologically valid conditions.


2020 ◽  
Author(s):  
Soma Nonaka ◽  
Kei Majima ◽  
Shuntaro C. Aoki ◽  
Yukiyasu Kamitani

SummaryAchievement of human-level image recognition by deep neural networks (DNNs) has spurred interest in whether and how DNNs are brain-like. Both DNNs and the visual cortex perform hierarchical processing, and correspondence has been shown between hierarchical visual areas and DNN layers in representing visual features. Here, we propose the brain hierarchy (BH) score as a metric to quantify the degree of hierarchical correspondence based on the decoding of individual DNN unit activations from human brain activity. We find that BH scores for 29 pretrained DNNs with varying architectures are negatively correlated with image recognition performance, indicating that recently developed high-performance DNNs are not necessarily brain-like. Experimental manipulations of DNN models suggest that relatively simple feedforward architecture with broad spatial integration is critical to brain-like hierarchy. Our method provides new ways for designing DNNs and understanding the brain in consideration of their representational homology.


2021 ◽  
Author(s):  
Derek Martin Smith ◽  
Brian T Kraus ◽  
Ally Dworetsky ◽  
Evan M Gordon ◽  
Caterina Gratton

Connector 'hubs' are brain regions with links to multiple networks. These regions are hypothesized to play a critical role in brain function. While hubs are often identified based on group-average functional magnetic resonance imaging (fMRI) data, there is considerable inter-subject variation in the functional connectivity profiles of the brain, especially in association regions where hubs tend to be located. Here we investigated how group hubs are related to locations of inter-individual variability, to better understand if hubs are (a) relatively conserved across people, (b) locations with malleable connectivity, leading individuals to show variable hub profiles, or (c) artifacts arising from cross-person variation. To answer this question, we compared the locations of hubs and regions of strong idiosyncratic functional connectivity ("variants") in both the Midnight Scan Club and Human Connectome Project datasets. Group hubs defined based on the participation coefficient did not overlap strongly with variants. These hubs have relatively strong similarity across participants and consistent cross-network profiles. Consistency across participants was further improved when participation coefficient hubs were allowed to shift slightly in local position. Thus, our results demonstrate that group hubs defined with the participation coefficient are generally consistent across people, suggesting they may represent conserved cross-network bridges. More caution is warranted with alternative hub measures, such as community density, which are based on spatial proximity and show higher correspondence to locations of individual variability.


2017 ◽  
Author(s):  
Michael F. Bonner ◽  
Russell A. Epstein

ABSTRACTBiologically inspired deep convolutional neural networks (CNNs), trained for computer vision tasks, have been found to predict cortical responses with remarkable accuracy. However, the complex internal operations of these models remain poorly understood, and the factors that account for their success are unknown. Here we developed a set of techniques for using CNNs to gain insights into the computational mechanisms underlying cortical responses. We focused on responses in the occipital place area (OPA), a scene-selective region of dorsal occipitoparietal cortex. In a previous study, we showed that fMRI activation patterns in the OPA contain information about the navigational affordances of scenes: that is, information about where one can and cannot move within the immediate environment. We hypothesized that this affordance information could be extracted using a set of purely feedforward computations. To test this idea, we examined a deep CNN with a feedforward architecture that had been previously trained for scene classification. We found that the CNN was highly predictive of OPA representations, and, importantly, that it accounted for the portion of OPA variance that reflected the navigational affordances of scenes. The CNN could thus serve as an image-computable candidate model of affordance-related responses in the OPA. We then ran a series of in silico experiments on this model to gain insights into its internal computations. These analyses showed that the computation of affordance-related features relied heavily on visual information at high-spatial frequencies and cardinal orientations, both of which have previously been identified as low-level stimulus preferences of scene-selective visual cortex. These computations also exhibited a strong preference for information in the lower visual field, which is consistent with known retinotopic biases in the OPA. Visualizations of feature selectivity within the CNN suggested that affordance-based responses encoded features that define the layout of the spatial environment, such as boundary-defining junctions and large extended surfaces. Together, these results map the sensory functions of the OPA onto a fully quantitative model that provides insights into its visual computations. More broadly, they advance integrative techniques for understanding visual cortex across multiple level of analysis: from the identification of cortical sensory functions to the modeling of their underlying algorithmic implementations.AUTHOR SUMMARYHow does visual cortex compute behaviorally relevant properties of the local environment from sensory inputs? For decades, computational models have been able to explain only the earliest stages of biological vision, but recent advances in the engineering of deep neural networks have yielded a breakthrough in the modeling of high-level visual cortex. However, these models are not explicitly designed for testing neurobiological theories, and, like the brain itself, their complex internal operations remain poorly understood. Here we examined a deep neural network for insights into the cortical representation of the navigational affordances of visual scenes. In doing so, we developed a set of high-throughput techniques and statistical tools that are broadly useful for relating the internal operations of neural networks with the information processes of the brain. Our findings demonstrate that a deep neural network with purely feedforward computations can account for the processing of navigational layout in high-level visual cortex. We next performed a series of experiments and visualization analyses on this neural network, which characterized a set of stimulus input features that may be critical for computing navigationally related cortical representations and identified a set of high-level, complex scene features that may serve as a basis set for the cortical coding of navigational layout. These findings suggest a computational mechanism through which high-level visual cortex might encode the spatial structure of the local navigational environment, and they demonstrate an experimental approach for leveraging the power of deep neural networks to understand the visual computations of the brain.


2018 ◽  
Vol 1 (3) ◽  
Author(s):  
Jiaxin Li ◽  
Chengbo Du ◽  
Mengjiao Chen ◽  
Ke Li ◽  
Jiao Xue ◽  
...  

Objective The nervous system is the control center that performs the function of the human body, including each nucleus of the cerebral cortex and basal ganglia, which can control the motion of the body through three pathways-direct pathway, indirect pathway and hyperdirect pathway. Long-term physical exercise can effectively improve the human respiratory and circulatory system function indicators and promote the development of nervous system.In order to discuss the mechanisms of the high level athletes' control of the brain function network and provide the experimental basis for the study of the motor control of the central nervous system, this research collects the activation images of the cortex and basal ganglia nuclei of the ordinary college students and the high level athletes and analyzes the function connection coefficient between the groups. Methods The subjects were 15 high level athletes and 15 ordinary college students. the changes of the brain structure and DTI fiber in the state of quiet and fatigue were collected by the functional magnetic resonance imaging (fMRI). Matlab software was used to compare images and data and to calculate the correlation coefficient between the related nuclear groups. Results (1) Compared with ordinary college students, the functional connectivity coefficient between the left thalamus and the left hippocampus is different in high level athletes (P<0.05). (2) The high level athletes’ functional connectivity in the left premotor area-right premotor area, left premotor area-right striatum, right premotor area-left central buckle in supplementary motor area, right premotor area-right central buckle in supplementary motor area, right premotor area-right striatum and right premotor area-left cerebellum were changed significantly after exercise fatigue (P<0.05). Conclusions The plasticity of brain function can be affected by long-term exercise training, which depends on sport training level. After exercise fatigue, the network connection system and nerve projection density change between cortical and subcortical nuclei, suggesting that exercise fatigue will change the functional connection between parts of the brain.(NSFC:31401018 SKXJX2014014).


2019 ◽  
Vol 10 (1) ◽  
Author(s):  
Andrea I. Luppi ◽  
Michael M. Craig ◽  
Ioannis Pappas ◽  
Paola Finoia ◽  
Guy B. Williams ◽  
...  

Abstract Prominent theories of consciousness emphasise different aspects of neurobiology, such as the integration and diversity of information processing within the brain. Here, we combine graph theory and dynamic functional connectivity to compare resting-state functional MRI data from awake volunteers, propofol-anaesthetised volunteers, and patients with disorders of consciousness, in order to identify consciousness-specific patterns of brain function. We demonstrate that cortical networks are especially affected by loss of consciousness during temporal states of high integration, exhibiting reduced functional diversity and compromised informational capacity, whereas thalamo-cortical functional disconnections emerge during states of higher segregation. Spatially, posterior regions of the brain’s default mode network exhibit reductions in both functional diversity and integration with the rest of the brain during unconsciousness. These results show that human consciousness relies on spatio-temporal interactions between brain integration and functional diversity, whose breakdown may represent a generalisable biomarker of loss of consciousness, with potential relevance for clinical practice.


2018 ◽  
Author(s):  
Mathieu Bourguignon ◽  
Martijn Baart ◽  
Efthymia C. Kapnoula ◽  
Nicola Molinaro

AbstractLip-reading is crucial to understand speech in challenging conditions. Neuroimaging investigations have revealed that lip-reading activates auditory cortices in individuals covertly repeating absent—but known—speech. However, in real-life, one usually has no detailed information about the content of upcoming speech. Here we show that during silent lip-reading of unknown speech, activity in auditory cortices entrains more to absent speech than to seen lip movements at frequencies below 1 Hz. This entrainment to absent speech was characterized by a speech-to-brain delay of 50–100 ms as when actually listening to speech. We also observed entrainment to lip movements at the same low frequency in the right angular gyrus, an area involved in processing biological motion. These findings demonstrate that the brain can synthesize high-level features of absent unknown speech sounds from lip-reading that can facilitate the processing of the auditory input. Such a synthesis process may help explain well-documented bottom-up perceptual effects.


2021 ◽  
Author(s):  
Oualid Benkarim ◽  
Casey Paquola ◽  
Bo-yong Park ◽  
Jessica Royer ◽  
Raúl Rodríguez-Cruces ◽  
...  

Ongoing brain function is largely determined by the underlying wiring of the brain, but the specific rules governing this relationship remain unknown. Emerging literature has suggested that functional interactions between brain regions emerge from the structural connections through mono- as well as polysynaptic mechanisms. Here, we propose a novel approach based on diffusion maps and Riemannian optimization to emulate this dynamic mechanism in the form of random walks on the structural connectome and predict functional interactions as a weighted combination of these random walks. Our proposed approach was evaluated in two different cohorts of healthy adults (Human Connectome Project, HCP; Microstructure-Informed Connectomics, MICs). Our approach outperformed existing approaches and showed that performance plateaus approximately around the third random walk. At macroscale, we found that the largest number of walks was required in nodes of the default mode and frontoparietal networks, underscoring an increasing relevance of polysynaptic communication mechanisms in transmodal cortical networks compared to primary and unimodal systems.


Author(s):  
Xiayu Chen ◽  
Ming Zhou ◽  
Zhengxin Gong ◽  
Wei Xu ◽  
Xingyu Liu ◽  
...  

ABSTRACTDeep neural networks (DNNs) have attained human-level performance on dozens of challenging tasks through an end-to-end deep learning strategy. Deep learning gives rise to data representations with multiple levels of abstraction; however, it does not explicitly provide any insights into the internal operations of DNNs. Its success appeals to neuroscientists not only to apply DNNs to model biological neural systems, but also to adopt concepts and methods from cognitive neuroscience to understand the internal representations of DNNs. Although general deep learning frameworks such as PyTorch and TensorFlow could be used to allow such cross-disciplinary studies, the use of these frameworks typically requires high-level programming expertise and comprehensive mathematical knowledge. A toolbox specifically designed for cognitive neuroscientists to map DNNs and brains is urgently needed. Here, we present DNNBrain, a Python-based toolbox designed for exploring internal representations in both DNNs and the brain. By integrating DNN software packages and well-established brain imaging tools, DNNBrain provides application programming and command line interfaces for a variety of research scenarios, such as extracting DNN activation, probing DNN representations, mapping DNN representations onto the brain, and visualizing DNN representations. We expect that our toolbox will accelerate scientific research in applying DNNs to model biological neural systems and utilizing paradigms of cognitive neuroscience to unveil the black box of DNNs.


Author(s):  
Preecha Yupapin ◽  
Amiri I. S. ◽  
Ali J. ◽  
Ponsuwancharoen N. ◽  
Youplao P.

The sequence of the human brain can be configured by the originated strongly coupling fields to a pair of the ionic substances(bio-cells) within the microtubules. From which the dipole oscillation begins and transports by the strong trapped force, which is known as a tweezer. The tweezers are the trapped polaritons, which are the electrical charges with information. They will be collected on the brain surface and transport via the liquid core guide wave, which is the mixture of blood content and water. The oscillation frequency is called the Rabi frequency, is formed by the two-level atom system. Our aim will manipulate the Rabi oscillation by an on-chip device, where the quantum outputs may help to form the realistic human brain function for humanoid robotic applications.


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