scholarly journals Quantitative analysis of spore shapes improves identification of fungi

2021 ◽  
Author(s):  
Alexander Ordynets ◽  
Sarah Keßler ◽  
Ewald Langer
Keyword(s):  
Species Identification ◽  
Shape Analysis ◽  
Fungal Spores ◽  
Principal Component ◽  
Fungal Spore ◽  
Fungal Species ◽  
Automated Identification ◽  
Linear Measurements ◽  
Shape Information ◽  
Identification Of Fungi

Morphology of organisms is an important source of evidence for biodiversity assessment, taxonomic decisions, and understanding of evolution. Shape information about zoological and botanical objects is often treated quantitatively and in this form improves species identification. In studies of fungi, quantitative shape analysis was almost ignored. The disseminated propagules of fungi, the spores, are crucial for their taxonomy – currently in the form of linear measurements or subjectively defined shape categories. It remains unclear how much quantifying spore shape information can improve species identification. In this study, we tested the hypothesis that shape, as a richer source of information, overperforms size when performing automated identification of fungal species. We used the fungi of the genus Subulicystidium (Agaricomycetes, Basidiomycota) as a study object. We analysed 2D spore shape data via elliptic Fourier and Principal Component analyses. With flexible discriminant analysis, we achieved a slightly higher species identification success rate for shape predictors (61.5%) than for size predictors (59.1%). However, we achieved the highest rate for a combination of both (64.7%). We conclude that quantifying fungal spore shapes is worth the effort. We provide an open access protocol which, we hope, will stimulate a broader use of quantitative shape analysis in fungal taxonomy. We also discuss the challenges of such analyses that are specific to fungal spores.

scholarly journals Geometric morphometric analysis of spore shapes improves identification of fungi

PLoS ONE ◽  
2021 ◽  
Vol 16 (8) ◽  
pp. e0250477
Author(s):  
Alexander Ordynets ◽  
Sarah Keßler ◽  
Ewald Langer
Keyword(s):  
Species Identification ◽  
Morphometric Analysis ◽  
Fungal Spores ◽  
Principal Component ◽  
Test System ◽  
Linear Measurements ◽  
Geometric Information ◽  
Geometric Morphometric ◽  
Geometric Morphometric Analysis ◽  
Shape And Size

Morphology of organisms is an essential source of evidence for taxonomic decisions and understanding of ecology and evolutionary history. The geometric structure (i.e., numeric description of shape) provides richer and mathematically different information about an organism’s morphology than linear measurements. A little is known on how these two sources of morphological information (shape vs. size) contribute to the identification of organisms when implied simultaneously. This study hypothesized that combining geometric information on the outline with linear measurements results in better species identification than either evidence alone can provide. As a test system for our research, we used the microscopic spores of fungi from the genus Subulicystidium (Agaricomycetes, Basidiomycota). We analyzed 2D spore shape data via elliptic Fourier and principal component analyses. Using flexible discriminant analysis, we achieved the highest species identification success rate for a combination of shape and size descriptors (64.7%). The shape descriptors alone predicted species slightly better than size descriptors (61.5% vs. 59.1%). We conclude that adding geometric information on the outline to linear measurements improves the identification of the organisms. Despite the high relevance of spore traits for the taxonomy of fungi, they were previously rarely analyzed with the tools of geometric morphometrics. Therefore, we supplement our study with an open access protocol for digitizing and summarizing fungal spores’ shape and size information. We propagate a broader use of geometric morphometric analysis for microscopic propagules of fungi and other organisms.

scholarly journals Incidence of post-harvest disease and airborne fungal spores in a vegetable market

2012 ◽  
Vol 71 (1) ◽  
pp. 147-157 ◽  
Author(s):  
Umesh Kakde ◽  
Hemalata Kakde
Keyword(s):  
Fungal Spores ◽  
Pathogenic Fungi ◽  
Fungal Spore ◽  
Fungal Species ◽  
Post Harvest ◽  
Cladosporium Herbarum ◽  
Rotorod Sampler ◽  
Airborne Fungal Spores ◽  
Penicillium Spp ◽  
Post Harvest Disease

Incidence of post-harvest disease and airborne fungal spores in a vegetable marketThe sampling of bioaerosols has been carried out using a Rotorod sampler as well as by exposing culture plates. The screening of some common vegetables was also done for the isolation of fungi as market pathogens to study post-harvest diseases. Altogether, fifty nine fungal spore types and 78 species of 33 genera belonging to different groups were recorded respectively on the rotorod strips and on exposed Petri dishes. Many saprophytic and pathogenic fungi were found to be associated with sampled vegetables from the market. In all forty-six fungal species belonging to 26 genera were recovered from five varieties of vegetables collected from the samemarket. The most dominant forms of fungi were ofAspergillusfollowed byCladosporium, Penicillium, Alternaria, Fusarium, Curvularia, Trichoderma, andRhizopus. Aspergillus niger, A.flavus, A. fumigatus, Penicillium spp.andCladosporium herbarum, found to be dominant during the period of investigation. Important mycotoxin-producing fungi such asA. flavus, A. fumigatusandFusarium moniliformewere isolated from the vegetables collected from the market.

scholarly journals The earliest example of sexual dimorphism in bivalves—evidence from the astartid Nicaniella (Lower Jurassic, southern Germany)

2021 ◽  
pp. 1-10
Author(s):  
Baran Karapunar ◽  
Winfried Werner ◽  
Franz T. Fürsich ◽  
Alexander Nützel
Keyword(s):  
Principal Component Analysis ◽  
Life History ◽  
Shape Analysis ◽  
Principal Component ◽  
Sex Change ◽  
Lower Jurassic ◽  
Allocation Of Resources ◽  
Fourier Shape Analysis ◽  
Lower Height ◽  
Male To Female

Abstract Protandrous sex change (sex change from male to female) is one of the diverse sexual expressions exhibited by bivalves, but its expression in the shell is quite rare. Previous studies on living and fossil astartids suggest a relationship between protandrous sex change and the formation of crenulations on the ventral shell margin at later ontogenetic stages. Here we report the formation of such crenulations in the Early Jurassic astartid Nicaniella rakoveci (Kuhn, 1935) from the Amaltheenton Formation at Buttenheim, Franconia. This is the earliest known record of protandrous hermaphroditism in fossil bivalves, predating previous reports by at least 13 Myr. A principal component analysis of linear size measurements and Fourier shape analysis of the shell outlines revealed that the outline of Nicaniella rakoveci specimens varies from subquadrate to subcircular, but this variation is independent of the presence or absence of crenulations and therefore not associated with sex. Crenulated specimens exhibit a lower height/inflation ratio than non-crenulated ones, suggesting that the protandrous females have more inflated valves than the males. The formation of crenulations was probably related to allocation of resources for reproduction. The most likely function of the crenulations was to increase the internal shell volume in the female stage to accommodate more eggs rather than being an adaptation against predation as often assumed for other bivalves. The formation of crenulations is part of the protandrous life history and probably is controlled by a genetic mechanism that is also responsible for sex change.

scholarly journals First Speleomycological Study on the Occurrence of Psychrophilic and Psychrotolerant Aeromycota in the Brestovská Cave (Western Tatras Mts., Slovakia) and First Reports for Some Species at Underground Sites

Biology ◽  
2021 ◽  
Vol 10 (6) ◽  
pp. 497
Author(s):  
Rafał Ogórek ◽  
Mateusz Speruda ◽  
Justyna Borzęcka ◽  
Agata Piecuch ◽  
Magdalena Cal
Keyword(s):  
Global Warming ◽  
Immune System ◽  
Biological Material ◽  
Fungal Spores ◽  
Airborne Fungi ◽  
Fungal Species ◽  
Air Samples ◽  
Cold Adapted ◽  
First Report

Most underground ecosystems are heterotrophic, fungi in these objects are dispersed in the air in the form of spores, and they may be potentially hazardous to mammals. Research in underground sites has focused on mesophilic airborne fungi and only a few concerned cold-adapted species. Therefore, the goal of our research was the first report of psychrophilic and psychrotolerant aeromycota in the Brestovská Cave using culture-based techniques with genetic and phenotypic identification. Plates with PDA medium containing sampled biological material were incubated at 8 ± 0.5 °C. The density of mycobiota inside the cave ranged from 37.4 to 71 CFU 1 m−3 of air and 63.3 CFU 1 m−3 of air outside the cave. Thus, the level of fungal spores did not exceed the standards for the mycological quality of the air. A total of 18 species were isolated during the study, and some species may be potentially dangerous to people with weakened immune system. All fungal species were present inside the cave and only seven of them were outside. Cladosporium cladosporioides dominated in the external air samples and Mortierella parvispora was cultured most frequently from internal air samples. To our knowledge, this is the first discovery of the fungal species such as Coniothyrium pyrinum, Cystobasidium laryngis, Filobasidium wieringae, Leucosporidium drummii, M. parvispora, Mrakia blollopis, Nakazawaea holstii, and Vishniacozyma victoriae in the air inside the underground sites. Moreover, C. pyrinum, C. laryngis, L. drummii, M. blollopis, and N. holstii have never been detected in any component of the underground ecosystems. There are possible reasons explaining the detection of those species, but global warming is the most likely.

scholarly journals Diversity, Concentration and Dynamics of Culturable Fungal Bioaerosols at Doha, Qatar

2020 ◽  
Vol 18 (1) ◽  
pp. 182
Author(s):  
Raghdaa K. Fayad ◽  
Roda F. Al-Thani ◽  
Fatima A. Al-Naemi ◽  
Mohammed H. Abu-Dieyeh
Keyword(s):  
Species Richness ◽  
Fungal Spores ◽  
Gravimetric Method ◽  
Fungal Spore ◽  
Industrial Area ◽  
Airborne Fungi ◽  
Culture Collection ◽  
Colony Count ◽  
Study Sites ◽  
Future Work

This research was conducted to investigate the dynamics of airborne fungi using viable culture collection and in respect to different abiotic variables, including seasonal and intra-diurnal variations. A gravimetric method was used to sample airborne fungal deposition on potato dextrose agar plates on alternate days, for a year between April 2015 to March 2016. From 176 settle plate exposures, a total of 1197 mould and 283 yeast colony-forming units (CFU), 21 genera and 62 species were retrieved. The highest fungal spore count was recorded in February 2016, whereas the lowest count occurred in August 2015. The main constituents of the fungal airspora were attributed to Cladosporium (60.2%), Aspergillus (10.4%), Fusarium (9.4%), Alternaria (8.5%), and Ganoderma spp. (2.3%). Temperature was negatively correlated with total colony count (r = −0.231, p ≤ 0.05) or species richness (r = −0.267, p ≤ 0.001), while wind speed was positively correlated with total colony count (r = 0.484, p ≤ 0.001) or species richness (r = 0.257, p ≤ −0.001). The highest dispersal of fungal spores was obtained at 18:00, whereas the lowest fungal spores release was recorded at 00:00 (midnight). There were no significant differences in species composition and richness of the airborne fungal population between two study sites, the Industrial area and Qatar University Campus. The count of Alternaria spp. and Fusarium spp. were significantly higher at the Industrial area site, which corresponds to a higher CO2 level than the Qatar University site. This study lays the foundation for future work to assess the implications of such aeromycological data on public health.

scholarly journals Characterisation of biofluorescent aerosol emissions over winter and summer periods in the United Kingdom

2018 ◽  
Author(s):  
Elizabeth Forde ◽  
Martin Gallagher ◽  
Virginia Foot ◽  
Roland Sarda-Esteve ◽  
Ian Crawford ◽  
...  
Keyword(s):  
United Kingdom ◽  
Relative Humidity ◽  
Aerosol Particles ◽  
Fungal Spores ◽  
Ultra Violet ◽  
Fungal Spore ◽  
Complete Analysis ◽  
Hierarchical Agglomerative Cluster ◽  
The United Kingdom ◽  
Fluorescent Particles

Abstract. Primary biological aerosol particles (PBAP) are an abundant subset of atmospheric aerosol particles which comprise viruses, bacteria, fungal spores, pollen, and fragments such as plant and animal debris. The abundance and diversity of these particles remain poorly constrained, causing significant uncertainties for modelling scenarios and for understanding the potential implications of these particles in different environments. PBAP concentrations were studied at four different sites in the United Kingdom (Weybourne, Davidstow, Capel Dewi, and Chilbolton) using an ultra-violet light induced fluorescence (UV-LIF) instrument, the Wideband Integrated Bioaerosol Spectrometer (WIBS), versions 3 and 4. Using hierarchical agglomerative cluster (HAC) analysis, particles were statistically discriminated between. Fluorescent particles and clusters were then analysed by assessing their diurnal variation and their relationship to the meteorological variables, temperature and relative humidity, and wind speed and direction. Using local land cover types, sources of the suspected fluorescent particles and clusters were then identified. Most sites exhibited a wet discharged fungal spore dominance, with the exception of one site, Davidstow, which had higher concentrations of bacteria, suggested to result from the presence of a local dairy factory. Differences were identified as to the sources of wet discharged fungal spores, with particles originating from arable and horticultural land at Chilbolton, and improved grassland areas at Weybourne. Total fluorescent particles at Capel Dewi were inferred to comprise two sources, with bacteria originating from the broadleaf and coniferous woodland and wet discharged fungal spores from nearby improved grassland areas, similar to Weybourne. The use of HAC and a higher fluorescence threshold (9SD) produced clusters which were considered to be biological following the complete analysis. More knowledge of the reaction of speciated biological particles to differences in meteorology, such as relative humidity and temperature would aid characterisation studies such as this.

scholarly journals Seasonal Diversity of Arbuscular Mycorrhizal Fungi in Mangroves of Goa, India

2013 ◽  
Vol 2013 ◽  
pp. 1-7 ◽  
Author(s):  
James D’Souza ◽  
Bernard Felinov Rodrigues
Keyword(s):  
Species Richness ◽  
Mycorrhizal Fungi ◽  
Monsoon Season ◽  
Arbuscular Mycorrhizal ◽  
Fungal Spore ◽  
Fungal Species ◽  
Spore Density ◽  
Species Variation ◽  
Fungal Community Composition ◽  
Mangrove Plant

Seasonal dynamics of arbuscular mycorrhizal (AM) fungal community composition in three common mangrove plant species, namely, Acanthus ilicifolius, Excoecaria agallocha, and Rhizophora mucronata, from two sites in Goa, India, were investigated. In all three species variation in AM fungal spore density was observed. Maximum spore density and AM species richness were recorded in the premonsoon season, while minimum spore density and richness were observed during monsoon season at both sites. A total of 11 AM fungal species representing five genera were recorded. Acaulospora laevis was recorded in all seasons at both sites. Multivariate analysis revealed that season and host coaffected AM spore density and species richness with the former having greater influence than the latter.

New genera of Paleogene fungal spores

1974 ◽  
Vol 52 (5) ◽  
pp. 953-958 ◽  
Author(s):  
William C. Elsik ◽  
Jan Jansonius
Keyword(s):  
Fungal Spores ◽  
Arctic Region ◽  
Fungal Spore ◽  
Western Hemisphere ◽  
Northwest Pacific ◽  
New Genera ◽  
New Form

Ctenosporites, Granatisporites, and Pesavis are described as new form genera of fossil fungal spores and spore-like fossils; Striadiporites and Pluricellaesporites are emended. Pesavis and Ctenosporites are geographically restricted to the northwest Pacific and Arctic region. Granatisporites is described to facilitate the classification of fungal spore types ubiquitous over at least the Western Hemisphere.

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