scholarly journals Spatiotemporal organization of branched microtubule networks

2019 ◽  
Author(s):  
Akanksha Thawani ◽  
Howard A Stone ◽  
Joshua W Shaevitz ◽  
Sabine Petry
Keyword(s):  
Single Molecule ◽  
Reaction Pathway ◽  
Reaction Model ◽  
Sequential Reaction ◽  
Spatiotemporal Organization ◽  
Nucleation Sites ◽  
Egg Extracts ◽  
Microtubule Networks ◽  
Rate Limiting ◽  
Kinetics Of

AbstractTo understand how chromosomes are segregated, it is necessary to explain the precise spatiotemporal organization of microtubules (MTs) in the mitotic spindle. We useXenopusegg extracts to study the nucleation and dynamics of MTs in branched networks, a process that is critical for spindle assembly. Surprisingly, new branched MTs preferentially originate near the minus-ends of pre-existing MTs. A sequential reaction model, consisting of deposition of nucleation sites on an existing MT, followed by rate-limiting nucleation of branches, reproduces the measured spatial profile of nucleation, the distribution of MT plus-ends and tubulin intensity. By regulating the availability of the branching effectors TPX2, augmin and γ-TuRC, combined with single-molecule observations, we show that first TPX2 is deposited on pre-existing MTs, followed by binding of augmin/γ-TuRC to result in the nucleation of branched MTs. In sum, regulating the localization and kinetics of nucleation effectors governs the architecture of branched MT networks.Impact StatementA sequential reaction pathway involving TPX2, augmin and γ-TuRC governs the assembly and architecture of branched microtubule networks.

scholarly journals Spatiotemporal organization of branched microtubule networks

eLife ◽  
2019 ◽  
Vol 8 ◽  
Author(s):  
Akanksha Thawani ◽  
Howard A Stone ◽  
Joshua W Shaevitz ◽  
Sabine Petry
Keyword(s):  
Single Molecule ◽  
Reaction Model ◽  
Sequential Reaction ◽  
Spatiotemporal Organization ◽  
Nucleation Sites ◽  
Egg Extracts ◽  
Xenopus Egg ◽  
Microtubule Networks ◽  
Xenopus Egg Extracts ◽  
Rate Limiting

To understand how chromosomes are segregated, it is necessary to explain the precise spatiotemporal organization of microtubules (MTs) in the mitotic spindle. We use Xenopus egg extracts to study the nucleation and dynamics of MTs in branched networks, a process that is critical for spindle assembly. Surprisingly, new branched MTs preferentially originate near the minus-ends of pre-existing MTs. A sequential reaction model, consisting of deposition of nucleation sites on an existing MT, followed by rate-limiting nucleation of branches, reproduces the measured spatial profile of nucleation, the distribution of MT plus-ends and tubulin intensity. By regulating the availability of the branching effectors TPX2, augmin and γ-TuRC, combined with single-molecule observations, we show that first TPX2 is deposited on pre-existing MTs, followed by binding of augmin/γ-TuRC to result in the nucleation of branched MTs. In sum, regulating the localization and kinetics of nucleation effectors governs the architecture of branched MT networks.

Reaction kinetics of 1,2-diaminobenzene with ethyl 2-oxopropanoate and 2,3-butanedione

1988 ◽  
Vol 53 (12) ◽  
pp. 3154-3163 ◽  
Author(s):  
Jiří Klicnar ◽  
Jaromír Mindl ◽  
Ivana Obořilová ◽  
Jaroslav Petříček ◽  
Vojeslav Štěrba
Keyword(s):  
Reaction Kinetics ◽  
Acid Catalysis ◽  
Reaction Pathway ◽  
Hydroxide Ion ◽  
Tetrahedral Intermediate ◽  
Rate Limiting Step ◽  
Limiting Step ◽  
General Acid ◽  
Rate Limiting ◽  
Kinetics Of

The reaction of 1,2-diaminobenzene with 2,3-butanedione is subject to general acid catalysis in acetate and phosphate buffers (pH 4-7). The rate-limiting step of formation of 2,3-dimethylquinoxaline consists in the protonation of dipolar tetrahedral intermediate. In the case of the reaction of 1,2-diaminobenzene with ethyl 2-oxopropanoate, the dehydration of carbinolamine gradually becomes rate-limiting with increasing pH in acetate buffers, whereas in phosphate buffers a new reaction pathway makes itself felt, viz. the formation of amide catalyzed by the basic buffer component and by hydroxide ion.

Base-catalyzed formation of spiro adduct from N-methyl-N-(2,4,6-trinitrophenyl)glycinamide, the smiles rearrangement of the amide in methanol

1988 ◽  
Vol 53 (3) ◽  
pp. 601-618 ◽  
Author(s):  
Jaromír Kaválek ◽  
Vladimír Macháček ◽  
Makky M. M. Hassanien ◽  
Vojeslav Štěrba
Keyword(s):  
Proton Transfer ◽  
Equilibrium Constant ◽  
Ammonium Salt ◽  
Aliphatic Amine ◽  
Reaction Pathway ◽  
Smiles Rearrangement ◽  
Rate Limiting Step ◽  
Limiting Step ◽  
Rate Limiting ◽  
Kinetics Of

The reaction of N-methyl-N-(2,4,6-trinitrophenyl)glycinamide (Ic with methoxide in methanol produces the spiro adduct IIc(A). In methanolic acetate buffers, the equilibrium is rapidly established between the spiro adduct IIc(A) and the dipolar ion of 2-methylamino-N-(2,4,6-trinitrophenyl)acetamide (IIIc(Z)). The equilibrium constant of the reaction IIIc(Z) ⇆ IIc(A) + H+ is by eight orders of magnitude greater than that of the analogous cyclization of 2-methylamino-N-methyl-N-(2,4,6-trinitrophenyl)acetamide to the spiro adduct. In chloracetate buffers, the dipolar ion is protonated to give 2-methylammonium-N-(2,4,6-trinitrohenyl)acetamide IIIc(K). The kinetics of the reversible reaction IIIc(Z) ⇆ IIc(A) + H+ has been studied in acetate buffers, aliphatic amine – ammonium salt buffers, and methoxide solutions. In all cases, the rate-limiting step was the proton transfer with half-lives in milliseconds. In more basic methanolic buffers (pH > 10) the rate-limiting step consists in the formation of spiro adduct from the zwiterion IIIc(Z) resulting from the protonation of the anion IIIc(A). n acetate buffers, the second reaction pathway via the cation IIIc(K) is predominant.

Reaction mechanism and chemical kinetics of NH3-NO/NO2-SCR system with vanadium-based catalyst under marine diesel exhaust conditions

2019 ◽  
Vol 234 (3) ◽  
pp. 342-352
Author(s):  
Zhanguang Wang ◽  
Yuanqing Zhu ◽  
Song Zhou ◽  
Yongming Feng
Keyword(s):  
Catalytic Mechanism ◽  
Catalytic Reduction ◽  
Reaction Pathway ◽  
Reaction Model ◽  
Temperature Oxidation ◽  
Marine Diesel ◽  
Standard Scr ◽  
Experimental Values ◽  
Scr System ◽  
Kinetics Of

As one of the most effective NOx emission removing technologies to meet the Tier III limitation by International Maritime Organization, urea-selective catalytic reduction (SCR) technology is starting to be used in two-stroke marine diesel engines. Based on the two-cycle catalytic mechanism proposed by Topsoe, in combination with the exhaust characteristics of the marine diesel, expansion studies on detailed SCR reaction model were carried out in this paper. According to the temperature dependence of reaction pathway, SCR reaction model was divided into three parts: low temperature reaction pathway, standard SCR reaction pathway, and high temperature oxidation pathways, and an expanded NH3-NO/NO2-SCR reaction model for V2O5 catalyst was proposed in the paper. In order to verify the accuracy of the expanded SCR reaction model, simulating and testing studies of SCR reaction under marine diesel conditions were carried out with a commercial extruded V2O5/TiO2 catalyst. The simulation values are agreed well with experimental values at 150–500 ℃, and kinetics characteristics of SCR reaction process under V2O5/TiO2 catalyst can be predicted accurately with the expanded NH3-NO/NO2-SCR reaction model.

scholarly journals Kinetics of HIV-1 capsid uncoating revealed by single-molecule analysis

eLife ◽  
2018 ◽  
Vol 7 ◽  
Author(s):  
Chantal L Márquez ◽  
Derrick Lau ◽  
James Walsh ◽  
Vaibhav Shah ◽  
Conall McGuinness ◽  
...  
Keyword(s):  
Single Molecule ◽  
Nuclear Import ◽  
Rate Limiting Step ◽  
Viral Cdna ◽  
Microscopy Method ◽  
Single Molecule Analysis ◽  
Rate Limiting ◽  
Kinetics Of ◽  
Hiv 1

Uncoating of the metastable HIV-1 capsid is a tightly regulated disassembly process required for release of the viral cDNA prior to nuclear import. To understand the intrinsic capsid disassembly pathway and how it can be modulated, we have developed a single-particle fluorescence microscopy method to follow the real-time uncoating kinetics of authentic HIV capsids in vitro immediately after permeabilizing the viral membrane. Opening of the first defect in the lattice is the rate-limiting step of uncoating, which is followed by rapid, catastrophic collapse. The capsid-binding inhibitor PF74 accelerates capsid opening but stabilizes the remaining lattice. In contrast, binding of a polyanion to a conserved arginine cluster in the lattice strongly delays initiation of uncoating but does not prevent subsequent lattice disassembly. Our observations suggest that different stages of uncoating can be controlled independently with the interplay between different capsid-binding regulators likely to determine the overall uncoating kinetics.

scholarly journals KIF3A accelerates KIF3C within the kinesin-2 heterodimer to generate symmetrical phosphate release rates for each processive step

2020 ◽  
pp. jbc.RA120.015272
Author(s):  
Sean M. Quinn ◽  
Troy Vargason ◽  
Nilisha Pokhrel ◽  
Edwin Antony ◽  
Juergen Hahn ◽  
...  
Keyword(s):  
Single Molecule ◽  
Slow Step ◽  
Phosphate Release ◽  
Intrinsic Kinetics ◽  
The Central Nervous System ◽  
Atp Binding And Hydrolysis ◽  
Future Work ◽  
Rate Limiting ◽  
Kinetics Of

Heterodimeric KIF3AC is a mammalian kinesin-2 that is highly expressed in the central nervous system and is associated with vesicles in neurons. KIF3AC is an intriguing member of the kinesin-2 family because the intrinsic kinetics of KIF3A and KIF3C when expressed as homodimers and analyzed in vitro are distinctively different from each other. For example, the single-molecule velocities of the engineered homodimers KIF3AA and KIF3CC are 293 nm/s and 7.5 nm/s, respectively, whereas KIF3AC has a velocity of 186 nm/s. These results led us to hypothesize that heterodimerization alters the intrinsic catalytic properties of the two heads, and an earlier computational analysis predicted that processive steps would alternate between a fast step for KIF3A followed by a slow step for KIF3C resulting in asymmetric stepping. To test this hypothesis directly, we measured the presteady-state kinetics of phosphate release for KIF3AC, KIF3AA, and KIF3CC followed by computational modeling of the KIF3AC phosphate release transients. The results reveal that KIF3A and KIF3C retain their intrinsic ATP binding and hydrolysis kinetics. Yet within KIF3AC, KIF3A activates the rate of phosphate release for KIF3C such that the coupled steps of phosphate release and dissociation from the microtubule become more similar for KIF3A and KIF3C. These coupled steps are the rate-limiting transition for the ATPase cycle suggesting that within KIF3AC, the stepping kinetics are similar for each head during the processive run. Future work will be directed to define how these properties enable KIF3AC to achieve its physiological functions.

Kinetics of cyclization of S-ethoxycarbonylmethylisothiouronium chloride to 2-imino-4-thiazolidone

1979 ◽  
Vol 44 (3) ◽  
pp. 912-917 ◽  
Author(s):  
Vladimír Macháček ◽  
Said A. El-bahai ◽  
Vojeslav Štěrba
Keyword(s):  
Hydrochloric Acid ◽  
Dilute Hydrochloric Acid ◽  
Base Catalysis ◽  
General Base ◽  
Rate Limiting Step ◽  
Limiting Step ◽  
Kinetics Of Formation ◽  
Acid Catalyzed ◽  
Rate Limiting ◽  
Kinetics Of

Kinetics of formation of 2-imino-4-thiazolidone from S-ethoxycarbonylmethylisothiouronium chloride has been studied in aqueous buffers and dilute hydrochloric acid. The reaction is subject to general base catalysis, the β value being 0.65. Its rate limiting step consists in acid-catalyzed splitting off of ethoxide ion from dipolar tetrahedral intermediate. At pH < 2 formation of this intermediate becomes rate-limiting; rate constant of its formation is 2 . 104 s-1.

Kinetics and mechanism of cyclization of N-(2-methoxycarbonylphenyl)-N’-methylsulphonamide to 3-methyl-(1H)-2,1,3-benzothiadiazin-4(3H)-one 2,2-dioxide

1991 ◽  
Vol 56 (8) ◽  
pp. 1701-1710 ◽  
Author(s):  
Jaromír Kaválek ◽  
Vladimír Macháček ◽  
Miloš Sedlák ◽  
Vojeslav Štěrba
Keyword(s):  
Potassium Hydroxide ◽  
Acid Catalysis ◽  
Potassium Hydroxide Solution ◽  
Hydroxide Solution ◽  
General Base ◽  
Rate Limiting Step ◽  
Limiting Step ◽  
Cyclization Kinetics ◽  
Rate Limiting ◽  
Kinetics Of

The cyclization kinetics of N-(2-methylcarbonylphenyl)-N’-methylsulfonamide (IIb) into 3-methyl-(1H)-2,1,3-benzothiadiazin-4(3H)-one 2,2-dioxide (Ib) has been studied in ethanolamine, morpholine, and butylamine buffers and in potassium hydroxide solution. The cyclization is subject to general base and general acid catalysis. The value of the Bronsted coefficient β is about 0.1, which indicates that splitting off of the proton from negatively charged tetrahedral intermediate represents the rate-limiting and thermodynamically favourable step. In the solutions of potassium hydroxide the cyclization of dianion of the starting ester IIb probably becomes the rate-limiting step.

Kinetic analysis of mechanism of intestinal Na+-dependent sugar transport

1985 ◽  
Vol 248 (5) ◽  
pp. C498-C509 ◽  
Author(s):  
D. Restrepo ◽  
G. A. Kimmich
Keyword(s):  
Experimental Data ◽  
Steady State ◽  
Sugar Transport ◽  
Enzyme Kinetic ◽  
Steady State Distribution ◽  
State Distribution ◽  
Least Squares Fit ◽  
Coupling Stoichiometry ◽  
Rate Limiting ◽  
Kinetics Of

Zero-trans kinetics of Na+-sugar cotransport were investigated. Sugar influx was measured at various sodium and sugar concentrations in K+-loaded cells treated with rotenone and valinomycin. Sugar influx follows Michaelis-Menten kinetics as a function of sugar concentration but not as a function of Na+ concentration. Nine models with 1:1 or 2:1 sodium:sugar stoichiometry were considered. The flux equations for these models were solved assuming steady-state distribution of carrier forms and that translocation across the membrane is rate limiting. Classical enzyme kinetic methods and a least-squares fit of flux equations to the experimental data were used to assess the fit of the different models. Four models can be discarded on this basis. Of the remaining models, we discard two on the basis of the trans sodium dependence and the coupling stoichiometry [G. A. Kimmich and J. Randles, Am. J. Physiol. 247 (Cell Physiol. 16): C74-C82, 1984]. The remaining models are terter ordered mechanisms with sodium debinding first at the trans side. If transfer across the membrane is rate limiting, the binding order can be determined to be sodium:sugar:sodium.

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