scholarly journals A reduced Gompertz model for predicting tumor age using a population approach

2019 ◽  
Author(s):  
C. Vaghi ◽  
A. Rodallec ◽  
R. Fanciullino ◽  
J. Ciccolini ◽  
J. Mochel ◽  
...  

AbstractTumor growth curves are classically modeled by ordinary differential equations. In analyzing the Gompertz model several studies have reported a striking correlation between the two parameters of the model.We analyzed tumor growth kinetics within the statistical framework of nonlinear mixed-effects (population approach). This allowed for the simultaneous modeling of tumor dynamics and interanimal variability. Experimental data comprised three animal models of breast and lung cancers, with 843 measurements in 94 animals. Candidate models of tumor growth included the Exponential, Logistic and Gompertz. The Exponential and – more notably – Logistic models failed to describe the experimental data whereas the Gompertz model generated very good fits. The population-level correlation between the Gompertz parameters was further confirmed in our analysis (R2 > 0.96 in all groups). Combining this structural correlation with rigorous population parameter estimation, we propose a novel reduced Gompertz function consisting of a single individual parameter. Leveraging the population approach using bayesian inference, we estimated the time of tumor initiation using three late measurement timepoints. The reduced Gompertz model was found to exhibit the best results, with drastic improvements when using bayesian inference as compared to likelihood maximization alone, for both accuracy and precision. Specifically, mean accuracy was 12.1% versus 74.1% and mean precision was 15.2 days versus 186 days, for the breast cancer cell line.These results offer promising clinical perspectives for the personalized prediction of tumor age from limited data at diagnosis. In turn, such predictions could be helpful for assessing the extent of invisible metastasis at the time of diagnosis.Author summaryMathematical models for tumor growth kinetics have been widely used since several decades but mostly fitted to individual or average growth curves. Here we compared three classical models (Exponential, Logistic and Gompertz) using a population approach, which accounts for inter-animal variability. The Exponential and the Logistic models failed to fit the experimental data while the Gompertz model showed excellent descriptive power. Moreover, the strong correlation between the two parameters of the Gompertz equation motivated a simplification of the model, the reduced Gompertz model, with a single individual parameter and equal descriptive power. Combining the mixed-effects approach with Bayesian inference, we predicted the age of individual tumors with only few late measurements. Thanks to its simplicity, the reduced Gompertz model showed superior predictive power. Although our method remains to be extended to clinical data, these results are promising for the personalized estimation of the age of a tumor from limited measurements at diagnosis. Such predictions could contribute to the development of computational models for metastasis.

2018 ◽  
Vol 39 (3) ◽  
pp. 1327
Author(s):  
Cleber Franklin Santos de Oliveira ◽  
João Marcos Novais Tavares ◽  
Gerusa Da Silva Salles Corrêa ◽  
Bruno Serpa Vieira ◽  
Silvana Alves Pedrozo Vitalino Barbosa ◽  
...  

The aim of this study was to compare mathematical models describing growth curves of white-egg layers at different population densities. To fit the models, 4,000 growing white-egg layers were utilized. The experimental design was completely randomized, with population densities of 71, 68, 65, 62, and 59 birds per cage in the starter phase and 19, 17, 15, 13, and 11 birds per cage in the grower phase, with 10 replicates each. Birds were weighed weekly to determine the average body weight and the weight gain. Gompertz and Logistic models were utilized to estimate their growth. The data analysis was carried out using the PROC NLMIXED procedure of the SAS® statistical computer software to estimate the parameters of the equation because mixed models were employed. The mean squared error, the coefficient of determination, and Akaike’s information criterion were used to evaluate the quality of fit of the models. The studied models converged for the description of the growth of the birds at the different densities studied, showing that they were appropriate for estimating the growth of white-egg layers housed at different population densities. The Gompertz model showed a better fit than the Logistic model.


Author(s):  
Cristina Vaghi ◽  
Anne Rodallec ◽  
Raphaelle Fanciullino ◽  
Joseph Ciccolini ◽  
Jonathan Mochel ◽  
...  

2018 ◽  
Vol 63 (No. 8) ◽  
pp. 331-338 ◽  
Author(s):  
Paz Claudia Cristina Paro de ◽  
Venturini Guilherme Costa ◽  
Contini Enio ◽  
Costa Ricardo Lopes Dias da ◽  
Lameirinha Luara Paula ◽  
...  

Growth curves of the Morada Nova sheep males and females were described using nonlinear models and the relationships between body weight and thoracic circumference were evaluated. Altogether 1516 repeated measures of body weight and thoracic circumference of the Morada Nova sheep (668 males and 848 females) taken since birth till 730 days of age were used. The Brody, Richards, von Bertalanffy, Gompertz, and Logistic models have been tested. The Fisher’s test (F) was used to verify the differences (P &lt; 0.05) in growth curves between males and females. The Gompertz model presented a significant difference (P &lt; 0.001) for growth curve parameters between males (asymptotic weight (A) = 40.5 kg and maturing rate (k) = 0.0043 kg/day) and females (A = 36.44 kg and k = 0.0028 kg/day). The relationships between body weight and thoracic circumference presented R<sup>2</sup> above 0.7 and a high significance (P &lt; 0.0001) for all categories, showing that the thoracic circumference may be a good indicator of body weight. In addition, a significant effect (P &lt; 0.05) of the relationship between thoracic circumference and prediction of animal’s body weight was verified using the models of linear, quadratic, and cubic regression. Among the models studied, the Gompertz model presented the best fit and biological interpretation. Furthermore, the Gompertz model indicated the need to separate animals by sex in order to properly meet nutritional requirements and determine adequate slaughter age. Thoracic circumference can be used to predict animal body weight with a high accuracy.


2020 ◽  
Vol 16 (2) ◽  
pp. e1007178 ◽  
Author(s):  
Cristina Vaghi ◽  
Anne Rodallec ◽  
Raphaëlle Fanciullino ◽  
Joseph Ciccolini ◽  
Jonathan P. Mochel ◽  
...  

Author(s):  
Leah Zilversmit Pao ◽  
Emily W. Harville ◽  
Jeffrey K. Wickliffe ◽  
Arti Shankar ◽  
Pierre Buekens

Metals, stress, and sociodemographics are commonly studied separately for their effects on birth outcomes, yet often jointly contribute to adverse outcomes. This study analyzes two methods for measuring cumulative risk to understand how maternal chemical and nonchemical stressors may contribute to small for gestational age (SGA). SGA was calculated using sex-specific fetal growth curves for infants of pregnant mothers (n = 2562) enrolled in the National Institute of Child Health and Human Development (NICHD) Fetal Growth Study. The exposures (maternal lead, mercury, cadmium, Cohen’s perceived stress, Edinburgh depression scores, race/ethnicity, income, and education) were grouped into three domains: metals, psychosocial stress, and sociodemographics. In Method 1 we created cumulative risk scores using tertiles. Method 2 employed weighted quantile sum (WQS) regression. For each method, logistic models were built with three exposure domains individually and race/ethnicity, adjusting for age, parity, pregnancy weight gain, and marital status. The adjusted effect of overall cumulative risk with three domains, was also modeled using each method. Sociodemographics was the only exposure associated with SGA in unadjusted models ((odds ratio) OR: 1.35, 95% (confidence interval) CI: 1.08, 1.68). The three cumulative variables in adjusted models were not significant individually, but the overall index was associated with SGA (OR: 1.17, 95% CI: 1.02, 1.35). In the WQS model, only the sociodemographics domain was significantly associated with SGA. Sociodemographics tended to be the strongest risk factor for SGA in both risk score and WQS models.


2019 ◽  
Author(s):  
Arsenii Dokuchaev ◽  
Svyatoslav Khamzin ◽  
Olga Solovyova

AbstractAgeing is the dominant risk factor for cardiovascular diseases. A great body of experimental data has been gathered on cellular remodelling in the Ageing myocardium from animals. Very few experimental data are available on age-related changes in the human cardiomyocyte. We have used our combined electromechanical model of the human cardiomyocyte and the population modelling approach to investigate the variability in the response of cardiomyocytes to age-related changes in the model parameters. To generate the model population, we varied nine model parameters and excluded model samples with biomarkers falling outside of the physiological ranges. We evaluated the response to age-related changes in four electrophysiological model parameters reported in the literature: reduction in the density of the K+ transient outward current, maximal velocity of SERCA, and an increase in the density of NaCa exchange current and CaL-type current. The sensitivity of the action potential biomarkers to individual parameter variations was assessed. Each parameter modulation caused an increase in APD, while the sensitivity of the model to changes in GCaL and Vmax_up was much higher than to those in the effects of Gto and KNaCa. Then 60 age-related sets of the four parameters were randomly generated and each set was applied to every model in the control population. We calculated the frequency of model samples with repolarisation anomalies (RA) and the shortening of the electro-mechanical window in the ageing model populations as an arrhythmogenic ageing score. The linear dependence of the score on the deviation of the parameters showed a high determination coefficient with the most significant impact due to the age-related change in the CaL current. The population-based approach allowed us to classify models with low and high risk of age-related RA and to predict risks based on the control biomarkers.


2019 ◽  
Vol 23 (Suppl. 6) ◽  
pp. 1901-1908
Author(s):  
Mehmet Gurcan ◽  
Arzu Demirelli

The distribution of the data is very important in all of the parametric methods used in the applied statistics. More clearly, if the experimental data fit well to the theoretical distribution, the results will be more efficient in parametric methods. The adaptability of experimental data to a theoretical distribution depends on the flexibility of the theoretical distribution used. If the flexibility of the theoretical distribution is sufficient, it can be used easily for experimental data. Most of the theoretical distributions have shape and location parameters. However, these two parameters are not always sufficient for the distribution adapt to the experimental data. Therefore, theoretical distributions with high flexibility in parametric methods are needed. Obtaining the new theoretical distributions that provide this feature is important for the literature. In this study, a new probability distribution has been obtained via Richard link function which has been high flexibility. In the introduction, important information is given related to growth models and Richard growth curve. Later, some details about the Richard distribution and wrapped distribution have been given.


2020 ◽  
Vol 42 (2) ◽  
Author(s):  
Édipo Menezes da Silva ◽  
Maraísa Hellen Tadeu ◽  
Victor Ferreira da Silva ◽  
Rafael Pio ◽  
Tales Jesus Fernandes ◽  
...  

Abstract Blackberry is a small fruit with several properties beneficial to human health and its cultivation is an alternative for small producers due to its fast and high financial return. Studying the growth of fruits over time is extremely important to understand their development, helping in the most appropriate crop management, avoiding post-harvest losses, which is one of the aggravating factors of blackberry cultivation, being a short shelf life fruit. Thus, growth curves are highlighted in this type of study and modeling through statistical models helps understanding how such growth occurs. Data from this study were obtained from an experiment conducted at the Federal University of Lavras in 2015. The aim of this study was to adjust nonlinear, double Logistic and double Gompertz models to describe the diameter growth of four blackberry cultivars (‘Brazos’, ‘Choctaw’, ‘Guarani’ and ‘Tupy’). Estimations of parameters were obtained using the least squares method and the Gauss-Newton algorithm, with the “nls” and “glns” functions of the R statistical software. The comparison of adjustments was made by the Akaike information criterion (AICc), residual standard deviation (RSD) and adjusted determination coefficient (R2 aj). The models satisfactorily described data, choosing the Logistic double model for ‘Brazos’ and ‘Guarani’ cultivars and the double Gompertz model for ‘Tupy’ and ‘Choctaw’ cultivars.


2018 ◽  
Vol 80 (01) ◽  
pp. 072-078 ◽  
Author(s):  
Berdine Heesterman ◽  
John-Melle Bokhorst ◽  
Lisa de Pont ◽  
Berit Verbist ◽  
Jean-Pierre Bayley ◽  
...  

Background To improve our understanding of the natural course of head and neck paragangliomas (HNPGL) and ultimately differentiate between cases that benefit from early treatment and those that are best left untreated, we studied the growth dynamics of 77 HNPGL managed with primary observation. Methods Using digitally available magnetic resonance images, tumor volume was estimated at three time points. Subsequently, nonlinear least squares regression was used to fit seven mathematical models to the observed growth data. Goodness of fit was assessed with the coefficient of determination (R 2) and root-mean-squared error. The models were compared with Kruskal–Wallis one-way analysis of variance and subsequent post-hoc tests. In addition, the credibility of predictions (age at onset of neoplastic growth and estimated volume at age 90) was evaluated. Results Equations generating sigmoidal-shaped growth curves (Gompertz, logistic, Spratt and Bertalanffy) provided a good fit (median R 2: 0.996–1.00) and better described the observed data compared with the linear, exponential, and Mendelsohn equations (p < 0.001). Although there was no statistically significant difference between the sigmoidal-shaped growth curves regarding the goodness of fit, a realistic age at onset and estimated volume at age 90 were most often predicted by the Bertalanffy model. Conclusions Growth of HNPGL is best described by decelerating tumor growth laws, with a preference for the Bertalanffy model. To the best of our knowledge, this is the first time that this often-neglected model has been successfully fitted to clinically obtained growth data.


2019 ◽  
Vol 09 (06) ◽  
pp. 1950046
Author(s):  
C. L. Wang

Two parameters are proposed as Jonscher indices, named after A. K. Jonscher for his pioneering contribution to the universal dielectric relaxation law. Time domain universal dielectric relaxation law is then obtained from the asymptotic behavior of dielectric response function and relaxation function by replacing parameters in Mittag–Leffler functions with Jonscher indices. Relaxation types can be easily determined from experimental data of discharge current in barium stannate titanate after their Jonscher indices are determined.


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