scholarly journals GenASM: A High-Performance, Low-Power Approximate String Matching Acceleration Framework for Genome Sequence Analysis

2020 ◽  
Author(s):  
Damla Senol Cali ◽  
Gurpreet S. Kalsi ◽  
Zulal Bingol ◽  
Can Firtina ◽  
Lavanya Subramanian ◽  
...  
Keyword(s):  
Sequence Analysis ◽  
Low Power ◽  
Genome Sequence ◽  
High Performance ◽  
String Matching ◽  
Approximate String Matching ◽  
Genome Sequence Analysis

scholarly journals Recurrent Mycobacterium chelonae Skin Infection Unmasked as Factitious Disorder Using Bacterial Whole Genome Sequence Analysis

2020 ◽  
Vol 7 (11) ◽  
Author(s):  
Sarah Flohr ◽  
Alban Ramette ◽  
Philipp K A Agyeman ◽  
Andrea Duppenthaler ◽  
Cordula Scherer ◽  
...  
Keyword(s):  
Sequence Analysis ◽  
Genome Sequence ◽  
Surgical Therapy ◽  
Skin Infection ◽  
Whole Genome Sequence ◽  
Factitious Disorder ◽  
Whole Genome ◽  
Mycobacterium Chelonae ◽  
Genome Sequence Analysis ◽  
Adequate Therapy

Abstract Mycobacterium chelonae infections usually resolve with adequate therapy. We report the case of an adolescent with a chronic and progressive M chelonae infection refractory to combined antimicrobial and surgical therapy. Whole genome sequence analysis of consecutive isolates distinguished reinfection from recurrence and contributed to the diagnosis of a factitious disorder.

scholarly journals Application of whole genome sequence analysis to the study of Mycobacterium tuberculosis in Nunavut, Canada

PLoS ONE ◽  
2017 ◽  
Vol 12 (10) ◽  
pp. e0185656 ◽  
Author(s):  
Andrea D. Tyler ◽  
Elaine Randell ◽  
Maureen Baikie ◽  
Kym Antonation ◽  
Debra Janella ◽  
...  
Keyword(s):  
Mycobacterium Tuberculosis ◽  
Sequence Analysis ◽  
Genome Sequence ◽  
Whole Genome Sequence ◽  
Whole Genome ◽  
Genome Sequence Analysis

scholarly journals Genome Sequence Analysis of CsRV1: A Pathogenic Reovirus that Infects the Blue Crab Callinectes sapidus Across Its Trans-Hemispheric Range

2016 ◽  
Vol 7 ◽  
Author(s):  
Emily M. Flowers ◽  
Tsvetan R. Bachvaroff ◽  
Janet V. Warg ◽  
John D. Neill ◽  
Mary L. Killian ◽  
...  
Keyword(s):  
Sequence Analysis ◽  
Blue Crab ◽  
Genome Sequence ◽  
Callinectes Sapidus ◽  
Genome Sequence Analysis
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