Inferring Effective Connectivity Networks From fMRI Time Series With a Temporal Entropy-Score

Author(s):  
Jinduo Liu ◽  
Junzhong Ji ◽  
Guangxu Xun ◽  
Aidong Zhang
2020 ◽  
Vol 34 (04) ◽  
pp. 4852-4859
Author(s):  
Jinduo Liu ◽  
Junzhong Ji ◽  
Guangxu Xun ◽  
Liuyi Yao ◽  
Mengdi Huai ◽  
...  

Inferring effective connectivity between different brain regions from functional magnetic resonance imaging (fMRI) data is an important advanced study in neuroinformatics in recent years. However, current methods have limited usage in effective connectivity studies due to the high noise and small sample size of fMRI data. In this paper, we propose a novel framework for inferring effective connectivity based on generative adversarial networks (GAN), named as EC-GAN. The proposed framework EC-GAN infers effective connectivity via an adversarial process, in which we simultaneously train two models: a generator and a discriminator. The generator consists of a set of effective connectivity generators based on structural equation models which can generate the fMRI time series of each brain region via effective connectivity. Meanwhile, the discriminator is employed to distinguish between the joint distributions of the real and generated fMRI time series. Experimental results on simulated data show that EC-GAN can better infer effective connectivity compared to other state-of-the-art methods. The real-world experiments indicate that EC-GAN can provide a new and reliable perspective analyzing the effective connectivity of fMRI data.


NeuroImage ◽  
2005 ◽  
Vol 26 (1) ◽  
pp. 177-183 ◽  
Author(s):  
Clayton E. Curtis ◽  
Felice T. Sun ◽  
Lee M. Miller ◽  
Mark D'Esposito

NeuroImage ◽  
2005 ◽  
Vol 24 (2) ◽  
pp. 350-362 ◽  
Author(s):  
William D. Penny ◽  
Nelson J. Trujillo-Barreto ◽  
Karl J. Friston

2021 ◽  
Vol 0 (0) ◽  
Author(s):  
Nader Moharamzadeh ◽  
Ali Motie Nasrabadi

Abstract The brain is considered to be the most complicated organ in human body. Inferring and quantification of effective (causal) connectivity among regions of the brain is an important step in characterization of its complicated functions. The proposed method is comprised of modeling multivariate time series with Adaptive Neurofuzzy Inference System (ANFIS) and carrying out a sensitivity analysis using Fuzzy network parameters as a new approach to introduce a connectivity measure for detecting causal interactions between interactive input time series. The results of simulations indicate that this method is successful in detecting causal connectivity. After validating the performance of the proposed method on synthetic linear and nonlinear interconnected time series, it is applied to epileptic intracranial Electroencephalography (EEG) signals. The result of applying the proposed method on Freiburg epileptic intracranial EEG data recorded during seizure shows that the proposed method is capable of discriminating between the seizure and non-seizure states of the brain.


2021 ◽  
Author(s):  
Ivan Abraham ◽  
Bahar Shahsavarani ◽  
Ben Zimmerman ◽  
Fatima Husain ◽  
yuliy baryshnikov

Fine-grained information about dynamic structure of cortical networks is crucial in unpacking brain function. Here,we introduced a novel analytical method to characterize the dynamic interaction between distant brain regions,based on cyclicity analysis, and applied it to data from the Human Connectome Project. Resting-state fMRI time series are aperiodic and, hence, lack a base frequency. Cyclicity analysis, which is time-reparametrization invariant, is effective in recovering dynamic temporal ordering of such time series along a circular trajectory without assuming any time scale. Our analysis detected the propagation of slow cortical waves across thebrain with consistent shifts in lead-lag relationships between specific brain regions. We also observed short bursts of strong temporal ordering that dominated overall lead-lag relationships between pairs of regions in the brain, which were modulated by tasks. Our results suggest the possible role played by slow waves of ordered information between brain regions that underlie emergent cognitive function.


2010 ◽  
Vol 09 (04) ◽  
pp. 381-406 ◽  
Author(s):  
J. BOSCH-BAYARD ◽  
J. RIERA-DIAZ ◽  
R. BISCAY-LIRIO ◽  
K. F. K. WONG ◽  
A. GALKA ◽  
...  

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