Identification model and properties of the membrane transport mechanism of the microbial enzyme catalysis of 1,3-propanediol based on robustness analysis

Author(s):  
Hongli Wang ◽  
Jianxiong Ye ◽  
Enmin Feng ◽  
Peiyi Li
2012 ◽  
Vol 2012 ◽  
pp. 1-18
Author(s):  
Zhaohua Gong ◽  
Chongyang Liu ◽  
Yongsheng Yu

Mathematical modeling and parameter estimation are critical steps in the optimization of biotechnological processes. In the 1,3-propanediol (1,3-PD) production by glycerol fermentation process under anaerobic conditions, 3-hydroxypropionaldehyde (3-HPA) accumulation would arouse an irreversible cessation of the fermentation process. Considering 3-HPA inhibitions to cells growth and to activities of enzymes, we propose a novel mathematical model to describe glycerol continuous cultures. Some properties of the above model are discussed. On the basis of the concentrations of extracellular substances, a parameter identification model is established to determine the kinetic parameters in the presented system. Through the penalty function technique combined with an extension of the state space method, an improved genetic algorithm is then constructed to solve the parameter identification model. An illustrative numerical example shows the appropriateness of the proposed model and the validity of optimization algorithm. Since it is difficult to measure the concentrations of intracellular substances, a quantitative robustness analysis method is given to infer whether the model is plausible for the intracellular substances. Numerical results show that the proposed model is of good robustness.


1981 ◽  
Vol 60 (3) ◽  
pp. 4P-5P ◽  
Author(s):  
J. P. Monson ◽  
J. A. Smith ◽  
R. D. Cohen ◽  
R. A. Iles

2008 ◽  
Vol 31 (9) ◽  
pp. 1773-1777 ◽  
Author(s):  
Makoto Aoki ◽  
Maki Iguchi ◽  
Hiroyuki Hayashi ◽  
Hisashi Suzuki ◽  
Shigeki Shibasaki ◽  
...  

2007 ◽  
Vol 7 (3) ◽  
pp. 513-524 ◽  
Author(s):  
Kazufumi Yazaki ◽  
Akifumi Sugiyama ◽  
Masahiko Morita ◽  
Nobukazu Shitan

1982 ◽  
Vol 5 (10) ◽  
pp. 1217-1227 ◽  
Author(s):  
Patrizia Zaccheo ◽  
Pier Luigi Genevini ◽  
Sergio M. Cocucci

2002 ◽  
Vol 173 (2) ◽  
pp. 247-255 ◽  
Author(s):  
FA Verhoeven ◽  
HH Van der Putten ◽  
G Hennemann ◽  
JM Lamers ◽  
TJ Visser ◽  
...  

Cellular and nuclear uptake of [125I]tri-iodothyronine (T3) and [125I]triiodothyroacetic acid (Triac) were compared in cardiomyocytes of 2-3 day old rats, and the effect of thyroid hormone analogs on cellular T(3) uptake was measured. Cells (5-10 x 10(5) per well) were cultured in DMEM-M199 with 5% horse serum and 5% FCS. Incubations were performed for from 15 min to 24 h at 37 degrees C in the same medium, 0.5% BSA and [125I]T3 (100 pM), or [125I]Triac (240 pM). Expressed as % dose, T(3) uptake was five times Triac uptake, but expressed as fmol/pM free hormone, Triac uptake was at least 30% (P<0.001) greater than T3 uptake, whereas the relative nuclear binding of the two tracers was comparable. The 15 min uptake of [125I]T3 was competitively inhibited by 10 microM unlabeled T3 (45-52%; P<0.001) or 3,3'- diiodothyronine (T2) (52%; P<0.001), and to a smaller extent by thyroxine (T(4)) (27%; 0.05<0.1). In contrast, 10 microM 3,5-T2, Triac, or tetraiodothyroacetic acid (Tetrac) did not affect T3 uptake after 15 min or after 24 h. Diiodothyropropionic acid (DITPA) (10 microM) reduced 15-min T3 uptake by about 24% (P<0.05), but it had a greater effect after 4 h (56%; P<0.001). Exposure to 10 nM DITPA during culture reduced cellular T3 uptake, as did 10 nM T3, suggesting down-regulation of the plasma membrane T3 transporters. We conclude that i) Triac is taken up by cardiomyocytes; ii) 3,3'-T2 and, to a lesser extent, DITPA and T4 interfere with plasma membrane transport of T3, whereas 3,5-T2, Triac, or Tetrac do not; iii) the transport mechanism for Triac is probably different from that for T3.


2007 ◽  
Vol 129 (4) ◽  
pp. 317-329 ◽  
Author(s):  
Michael Walden ◽  
Alessio Accardi ◽  
Fang Wu ◽  
Chen Xu ◽  
Carole Williams ◽  
...  

The CLC-family protein CLC-ec1, a bacterial homologue of known structure, stoichiometrically exchanges two Cl− for one H+ via an unknown membrane transport mechanism. This study examines mutations at a conserved tyrosine residue, Y445, that directly coordinates a Cl− ion located near the center of the membrane. Mutations at this position lead to “uncoupling,” such that the H+/Cl− transport ratio decreases roughly with the volume of the substituted side chain. The uncoupled proteins are still able to pump protons uphill when driven by a Cl− gradient, but the extent and rate of this H+ pumping is weaker in the more uncoupled variants. Uncoupling is accompanied by conductive Cl− transport that is not linked to counter-movement of H+, i.e., a “leak.” The unitary Cl− transport rate, measured in reconstituted liposomes by both a conventional initial-velocity method and a novel Poisson dilution approach, is ∼4,000 s−1 for wild-type protein, and the uncoupled mutants transport Cl− at similar rates.


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