Selection of Carrier and B Cell Protectope Sequences for Vaccines

1995 ◽  
Vol 754 (1 Combined Vacc) ◽  
pp. 57-67
Author(s):  
HOWARD M. ETLINGER
Keyword(s):  
B Cell ◽  
Science ◽  
2019 ◽  
Vol 366 (6470) ◽  
pp. eaay7199 ◽  
Author(s):  
Kevin O. Saunders ◽  
Kevin Wiehe ◽  
Ming Tian ◽  
Priyamvada Acharya ◽  
Todd Bradley ◽  
...  

1993 ◽  
Vol 23 (11) ◽  
pp. 2945-2950 ◽  
Author(s):  
Gilles Dietrich ◽  
Francisco J. Varela ◽  
Vincent Hurez ◽  
Majida Bouanani ◽  
Michel D. Kazatchkine

Cell Reports ◽  
2021 ◽  
Vol 36 (7) ◽  
pp. 109561
Author(s):  
Olivia Swanson ◽  
Brianna Rhodes ◽  
Avivah Wang ◽  
Shi-Mao Xia ◽  
Robert Parks ◽  
...  

2015 ◽  
Vol 212 (10) ◽  
pp. 1663-1677 ◽  
Author(s):  
Nikita S. Kolhatkar ◽  
Archana Brahmandam ◽  
Christopher D. Thouvenel ◽  
Shirly Becker-Herman ◽  
Holly M. Jacobs ◽  
...  

Wiskott-Aldrich syndrome (WAS) is an X-linked immunodeficiency disorder frequently associated with systemic autoimmunity, including autoantibody-mediated cytopenias. WAS protein (WASp)–deficient B cells have increased B cell receptor (BCR) and Toll-like receptor (TLR) signaling, suggesting that these pathways might impact establishment of the mature, naive BCR repertoire. To directly investigate this possibility, we evaluated naive B cell specificity and composition in WASp-deficient mice and WAS subjects (n = 12). High-throughput sequencing and single-cell cloning analysis of the BCR repertoire revealed altered heavy chain usage and enrichment for low-affinity self-reactive specificities in murine marginal zone and human naive B cells. Although negative selection mechanisms including deletion, anergy, and receptor editing were relatively unperturbed, WASp-deficient transitional B cells showed enhanced proliferation in vivo mediated by antigen- and Myd88-dependent signals. Finally, using both BCR sequencing and cell surface analysis with a monoclonal antibody recognizing an intrinsically autoreactive heavy chain, we show enrichment in self-reactive cells specifically at the transitional to naive mature B cell stage in WAS subjects. Our combined data support a model wherein modest alterations in B cell–intrinsic, BCR, and TLR signals in WAS, and likely other autoimmune disorders, are sufficient to alter B cell tolerance via positive selection of self-reactive transitional B cells.


Author(s):  
W. H. Marshall ◽  
G. Sierp ◽  
T. Barbalho ◽  
F. T. Christiansen ◽  
S. Scholz ◽  
...  

2020 ◽  
Vol 36 (16) ◽  
pp. 4510-4512
Author(s):  
Giulio Isacchini ◽  
Carlos Olivares ◽  
Armita Nourmohammad ◽  
Aleksandra M Walczak ◽  
Thierry Mora

Abstract Summary Recent advances in modelling VDJ recombination and subsequent selection of T- and B-cell receptors provide useful tools to analyse and compare immune repertoires across time, individuals and tissues. A suite of tools—IGoR, OLGA and SONIA—have been publicly released to the community that allow for the inference of generative and selection models from high-throughput sequencing data. However, using these tools requires some scripting or command-line skills and familiarity with complex datasets. As a result, the application of the above models has not been available to a broad audience. In this application note, we fill this gap by presenting Simple OLGA & SONIA (SOS), a web-based interface where users with no coding skills can compute the generation and post-selection probabilities of their sequences, as well as generate batches of synthetic sequences. The application also functions on mobile phones. Availability and implementation SOS is freely available to use at sites.google.com/view/statbiophysens/sos with source code at github.com/statbiophys/sos.


2001 ◽  
Vol 212 (3) ◽  
pp. 333-343 ◽  
Author(s):  
ROB J. DE BOER ◽  
ANTÓNIO A. FREITAS ◽  
ALAN S. PERELSON

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