scholarly journals 1,135 ionomes reveals the global pattern of leaf and seed mineral nutrient and trace element diversity in Arabidopsis thaliana

2021 ◽  
Author(s):  
Ana Carolina A. L. Campos ◽  
William F.A. Dijk ◽  
Priya Ramakrishna ◽  
Tom Giles ◽  
Pamela Korte ◽  
...  

PLoS ONE ◽  
2012 ◽  
Vol 7 (4) ◽  
pp. e35121 ◽  
Author(s):  
Ivan Baxter ◽  
Christian Hermans ◽  
Brett Lahner ◽  
Elena Yakubova ◽  
Marina Tikhonova ◽  
...  


2018 ◽  
Author(s):  
Nadia Bouain ◽  
Arthur Korte ◽  
Santosh B. Satbhai ◽  
Seung Y. Rhee ◽  
Wolfgang Busch ◽  
...  

AbstractThe molecular genetic mechanisms by which plants modulate their root growth rate (RGR) in response to nutrient deficiency are largely unknown. Using a panel of Arabidopsis thaliana natural accessions, we provide a comprehensive combinatorial analysis of RGR variation under macro- and micronutrient deficiency, namely phosphorus (P), iron (Fe), and zinc (Zn), which affect root growth in opposite directions. We found that while -P stimulates early RGR of most accessions, -Fe or -Zn reduces it. The combination of either -P-Fe or -P-Zn leads to suppression of the growth inhibition exerted by -Fe or -Zn alone. Surprisingly, Arabidopsis reference accession Columbia (Col-0) is not representative of the species under -P and -Zn. Using a genome wide association study, we identify candidate genes that control RGR under the assayed nutrient deficiency conditions. By using a network biology driven search using these candidate genes, we further identify a functional module enriched in regulation of cell cycle, DNA replication and chromatin modification that possibly underlies the suppression of root growth reduction in -P-Fe conditions. Collectively, our findings provide a framework for understanding the regulation of RGR under nutrient deficiency, and open new routes for the identification of both large effect genes and favorable allelic variations to improve root growth.





2021 ◽  
Vol 22 (18) ◽  
pp. 10166
Author(s):  
Gianpiero Vigani ◽  
Monirul Islam ◽  
Viviana Cavallaro ◽  
Fabio F. Nocito ◽  
Massimo E. Maffei

The geomagnetic field (GMF) is an environmental factor affecting the mineral nutrient uptake of plants and a contributing factor for efficient iron (Fe) uptake in Arabidopsis seedlings. Understanding the mechanisms underlining the impact of the environment on nutrient homeostasis in plants requires disentangling the complex interactions occurring among nutrients. In this study we investigated the effect of GMF on the interplay between iron (Fe) and sulfur (S) by exposing Arabidopsis thaliana plants grown under single or combined Fe and S deficiency, to near-null magnetic field (NNMF) conditions. Mineral analysis was performed by ICP-MS and capillary electrophoresis, whereas the expression of several genes involved in Fe and S metabolism and transport was assayed by qRT-PCR. The results show that NNMF differentially affects (i) the expression of some Fe- and S-responsive genes and (ii) the concentration of metals in plants, when compared with GMF. In particular, we observed that Cu content alteration in plant roots depends on the simultaneous variation of nutrient availability (Fe and S) and MF intensity (GMF and NNMF). Under S deficiency, NNMF-exposed plants displayed variations of Cu uptake, as revealed by the expression of the SPL7 and miR408 genes, indicating that S availability is an important factor in maintaining Cu homeostasis under different MF intensities. Overall, our work suggests that the alteration of metal homeostasis induced by Fe and/or S deficiency in reduced GMF conditions impacts the ability of plants to grow and develop.



2001 ◽  
Vol 79 (11) ◽  
pp. 1292-1296 ◽  
Author(s):  
John NA Lott ◽  
M Marcia West

Comparison of wild type and mutants of Arabidopsis thaliana offers an opportunity to study the genetic control of nutrient storage in seeds. We used energy dispersive X-ray analysis to determine the elements present and their relative amounts in globoids of dry wild-type seeds, as well as seeds of a reduced total P uptake mutant (pho1), a phosphate accumulator (pho2), and a metal accumulator (man1). Globoids are spherical inclusions, rich in phytate that function as a store for inositol, P, K, Mg, Ca, Fe, and Zn. Key findings of this study were the following: (i) globoids in protein bodies from nine different tissues and (or) organs in dry Arabidopsis thaliana seeds contained P, K, Mg, and Ca, and sometimes traces of Fe and Zn; (ii) globoids contained higher Ca and lower Mg amounts than occur in globoids in seeds of most other plant species; (iii) globoids in comparable tissue and (or) organ regions of seeds were very similar in elemental composition for wild type and all mutant plants.Key words: Arabidopsis, dry seeds, phytate, mineral nutrient mutants, phosphorus, globoids.



PLoS Genetics ◽  
2019 ◽  
Vol 15 (11) ◽  
pp. e1008392 ◽  
Author(s):  
Nadia Bouain ◽  
Arthur Korte ◽  
Santosh B. Satbhai ◽  
Hye-In Nam ◽  
Seung Y. Rhee ◽  
...  


Nature ◽  
2012 ◽  
Vol 491 (7426) ◽  
pp. 698-704 ◽  
Author(s):  
Hugh St C. O’Neill ◽  
Frances E. Jenner


Cell ◽  
2016 ◽  
Vol 166 (2) ◽  
pp. 481-491 ◽  
Author(s):  
Carlos Alonso-Blanco ◽  
Jorge Andrade ◽  
Claude Becker ◽  
Felix Bemm ◽  
Joy Bergelson ◽  
...  




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