scholarly journals Penetration depth of photons in biological tissues from hyperspectral imaging in shortwave infrared in transmission and reflection geometries

2016 ◽  
Vol 21 (12) ◽  
pp. 126006 ◽  
Author(s):  
Hairong Zhang ◽  
Daniel Salo ◽  
David M. Kim ◽  
Sergey Komarov ◽  
Yuan-Chuan Tai ◽  
...  
2020 ◽  
Author(s):  
L. Granlund ◽  
M. Keinänen ◽  
T. Tahvanainen

Abstract Aims Hyperspectral imaging (HSI) has high potential for analysing peat cores, but methodologies are deficient. We aimed for robust peat type classification and humification estimation. We also explored other factors affecting peat spectral properties. Methods We used two laboratory setups: VNIR (visible to near-infrared) and SWIR (shortwave infrared) for high resolution imaging of intact peat profiles with fen-bog transitions. Peat types were classified with support vector machines, indices were developed for von Post estimation, and K-means clustering was used to analyse stratigraphic patterns in peat quality. With separate experiments, we studied spectral effects of drying and oxidation. Results Despite major effects, oxidation and water content did not impede robust HSI classification. The accuracy between Carex peat and Sphagnum peat in validation was 80% with VNIR and 81% with SWIR data. The spectral humification indices had accuracies of 82% with VNIR and 56%. Stratigraphic HSI patterns revealed that 36% of peat layer shifts were inclined by over 20 degrees. Spectral indices were used to extrapolate visualisations of element concentrations. Conclusions HSI provided reliable information of basic peat quality and was useful in visual mapping, that can guide sampling for other analyses. HSI can manage large amounts of samples to widen the scope of detailed analysis beyond single profiles and it has wide potential in peat research beyond the exploratory scope of this paper. We were able to confirm the capacity of HSI to reveal shifts of peat quality, connected to ecosystem-scale change.


Sensors ◽  
2016 ◽  
Vol 16 (4) ◽  
pp. 441 ◽  
Author(s):  
Min Huang ◽  
Moon Kim ◽  
Kuanglin Chao ◽  
Jianwei Qin ◽  
Changyeun Mo ◽  
...  

2018 ◽  
Vol 115 (37) ◽  
pp. 9080-9085 ◽  
Author(s):  
Jessica A. Carr ◽  
Marianne Aellen ◽  
Daniel Franke ◽  
Peter T. C. So ◽  
Oliver T. Bruns ◽  
...  

Recent technology developments have expanded the wavelength window for biological fluorescence imaging into the shortwave infrared. We show here a mechanistic understanding of how drastic changes in fluorescence imaging contrast can arise from slight changes of imaging wavelength in the shortwave infrared. We demonstrate, in 3D tissue phantoms and in vivo in mice, that light absorption by water within biological tissue increases image contrast due to attenuation of background and highly scattered light. Wavelengths of strong tissue absorption have conventionally been avoided in fluorescence imaging to maximize photon penetration depth and photon collection, yet we demonstrate that imaging at the peak absorbance of water (near 1,450 nm) results in the highest image contrast in the shortwave infrared. Furthermore, we show, through microscopy of highly labeled ex vivo biological tissue, that the contrast improvement from water absorption enables resolution of deeper structures, resulting in a higher imaging penetration depth. We then illustrate these findings in a theoretical model. Our results suggest that the wavelength-dependent absorptivity of water is the dominant optical property contributing to image contrast, and is therefore crucial for determining the optimal imaging window in the infrared.


2020 ◽  
Vol 28 (2) ◽  
pp. 70-80 ◽  
Author(s):  
Perez Mukasa ◽  
Collins Wakholi ◽  
Akbar Faqeerzada Mohammad ◽  
Eunsoo Park ◽  
Jayoung Lee ◽  
...  

The combination of hyperspectral imaging with multivariate data analysis methods has recently been applied to develop a nondestructive technique, required to determine the seed viability of artificially aged vegetable and cereal seeds. In this study, the potential of shortwave infrared hyperspectral imaging to determine the viability of naturally aged seeds was investigated and thereafter a model for online seed sorting system was developed. The hyperspectral images of 400 Hinoki cypress tree seeds were acquired, and germination tests were conducted for viability confirmation, which indicated 31.5% of the viable seeds. Partial least square discriminant analysis models with 179 variables in the wavelength region of 1000–1800 nm were developed with a maximum model accuracy of 98.4% and 93.8% in both the calibration and validation sets, respectively. The partial least square discriminant analysis beta coefficient revealed the key wavelengths to differentiate viable from nonviable seeds, determined based on the differences in the chemical compositions of the seeds, including their lipid and fatty acid contents, which may control the germination ability of the seeds. The most effective wavelengths were selected using two model-based variable selection methods (i.e., the variable importance of projection (15 variables) and the successive projections algorithm (8 variables)) to develop the model. The successive projections algorithm wavelength selection method was considered to develop a viability model, and its application to the raw data resulted in a prediction accuracy of 94.7% in the calibration set and 92.2% in the validation set. These results demonstrate the potential of shortwave infrared hyperspectral imaging spectroscopy as a powerful nondestructive method to determine the viability of Hinoki cypress seeds. This method could be applied to develop an online seed sorting system for seed companies and nurseries.


2019 ◽  
Vol 5 (10) ◽  
pp. eaav8936 ◽  
Author(s):  
A. Tournié ◽  
K. Fleischer ◽  
I. Bukreeva ◽  
F. Palermo ◽  
M. Perino ◽  
...  

Only a few Herculaneum rolls exhibit writing on their reverse side. Since unrolled papyri are permanently glued to paperboard, so far, this fact was known to us only from 18th-century drawings. The application of shortwave-infrared (SWIR; 1000-2500 nm) hyperspectral imaging (HSI) to one of them (PHerc. 1691/1021) has revealed portions of Greek text hidden on the back more than 220 years after their first discovery, making it possible to recover this primary source for the ongoing new edition of this precious book. SWIR HSI has produced better contrast and legibility even on the extensive text preserved on the front compared to former imaging of Herculaneum papyri at 950 nm (improperly called multispectral imaging), with a substantial impact on the text reconstruction. These promising results confirm the importance of advanced techniques applied to ancient carbonized papyri and open the way to a better investigation of hundreds of other such papyri.


2020 ◽  
Vol 10 (23) ◽  
pp. 8692
Author(s):  
Zoltan Vilagosh ◽  
Alireza Lajevardipour ◽  
Dominique Appadoo ◽  
Soon Hock Ng ◽  
Saulius Juodkazis ◽  
...  

The penetration depth of an evanescent wave in Attenuated Total Reflection (ATR) is dependent on the wavelength of the radiation utilised. At THz frequencies, the penetration depth into biological tissues is in the order of 0.1 to 0.5 mm; rendered pig lard was used as a model sample in this study. A method for the direct measurement of the evanescent wave penetration depth is presented which allows for the estimation of the dispersion of the complex refractive index by using the reflection of the evanescent wave from varying sample depths. The method employs frustrated total internal reflection, and has been demonstrated by using the THz/Far-IR beamline at the Australian synchrotron, and modelled using finite difference time domain (FDTD) simulations.


Sign in / Sign up

Export Citation Format

Share Document