scholarly journals Machine learning for direct oxygen saturation and hemoglobin concentration assessment using diffuse reflectance spectroscopy

2020 ◽  
Vol 25 (11) ◽  
Author(s):  
Ingemar Fredriksson ◽  
Marcus Larsson ◽  
Tomas Strömberg
PLoS ONE ◽  
2019 ◽  
Vol 14 (10) ◽  
pp. e0223682 ◽  
Author(s):  
Ulf Dahlstrand ◽  
Rafi Sheikh ◽  
Cu Dybelius Ansson ◽  
Khashayar Memarzadeh ◽  
Nina Reistad ◽  
...  

2019 ◽  
Author(s):  
Sina Dadgar ◽  
Liz Greene ◽  
Ahmed Dhamad ◽  
Barbara Mallmann ◽  
Sami Dridi ◽  
...  

AbstractGlobal rise in incidence of woody breast (WB) syndrome imposes a significant economic burden on the poultry industry. The increase in WB is due to the large increase in the weight of chickens these days within a very short period. An early determination of WB can significantly reduce losses to the poultry industry. Diffuse reflectance spectroscopy provides a noninvasive and rapid method to interrogate tissue function. The sensitivity of DRS to the distinct absorption spectra of oxygenated and deoxygenated hemoglobin allows accurate quantification of average hemoglobin concentration and vascular oxygenation within the sampled tissue. In this study, we used diffuse reflectance spectroscopy to monitor breast hemoglobin concentration (THb) and vascular oxygen saturation (sO2) of 16 chickens that were exposed to heat stress (HS). HS is an important cause of WB myopathy in chickens. Animals were exposed to heat-stress (HS) and optical data were acquired at three time points: at baseline prior to heat stress, 2 days, and 21 days after initiation of HS. Our results show that animals from control and HS groups had a steady decay in optically derived breast hemoglobin concentration consistent with independent i-STAT measurements made on blood sampled from the femoral artery and could provide a noninvasive technology for monitoring tissue function in the poultry industry.


2021 ◽  
Vol 26 (05) ◽  
Author(s):  
Mayna H. Nguyen ◽  
Yao Zhang ◽  
Frank Wang ◽  
Jose De La Garza Evia Linan ◽  
Mia K. Markey ◽  
...  

2021 ◽  
Author(s):  
Gabriela Naibo ◽  
Rafael Ramon ◽  
Gustavo Pesini ◽  
Jean Michel Moura-Bueno ◽  
Claudia Alessandra Peixoto Barros ◽  
...  

<p>The intense soil use with inadequate management can result in the constant transport of sediments with chemical elements absorbed to aquatic systems. The diffuse reflectance spectroscopy in the near infrared (NIR) and medium (MIR) spectral bands associated with chemometry and machine learning, is an analytical technique that has the potential to quantify the concentration of chemical elements in the environment. However, there is no consensus on the best combination of calibration methods, spectral pre-processing and spectral ranges. Thus, the objective of this study was to evaluate the use of this technique, with the combination of different spectral bands, pre-processing techniques and machine learning to estimate the concentration of chemical elements on soil and sediment samples. In this study we used a soil and sediment database from samples collected in the Guaporé River catchment, in southern Brazil. A total of 316 soil samples and 196 sediment samples were dried, disaggregated and sieved at 63 μm. Organic carbon (CO) was quantified by wet oxidation and the total concentration of 21 elements (Al, Ba, Be, Ca, Co, Cr, Cu, Fe, K, La, Li, Mg, Mn, Na, Ni, P, Pb, Sr, Ti V and Zn) were quantified by ICP-OES after microwave assisted digestion for 9,5 min at 182ºC with HCl and HNO<sub>3 </sub>concentrated in the proportion of 3:1. The NIR (1000-2500 nm) and MIR (2500-25000 nm) spectra were obtained in all soil and sediment samples. Two machine-learning methods were tested: Partial Least Squares Regression (PLSR) and Support Vector Machine (SVM), associated with three different spectrum pre-processing methods: Detrend (DET), Savitzky-Golay Derivative (SGD) and Standard Normal Variate (SNV), compared to raw data (RAW). Performance was assessed by the coefficient of determination (R²) and the relationship between performance and interquartile distance (RPIQ). The SVM model resulted in better predictions compared to the PLSR in all evaluated cases, as indicated by the average adjustment values of the model (R²=0.87 for SVM and 0.62 for PLSR), and by the RPIQ values (7.14 for SVM and 2.22 for PLSR). The pre-processing method increased the accuracy of the estimates in the following order: RAW<SNV< DET<SGD. The best performance in relation to the spectral range was observed for the MIR region, being significantly superior to the NIR and NIR+MIR combination. The adjustment of the models calibrated with soil (R²=0.91) and sediment (R²=0.90) data was higher compared to the calibrated with the combination soil + sediment (R²=0.78). For RPIQ, the calibration model with soil data showed the highest RPIQ value (9.29), being higher and differing significantly from the others. In general, the results show that the combination of different calibration methods, spectral pre-processing and spectral ranges has an effect on the accuracy of the estimates. The studied elements can be estimated by means of diffuse reflectance spectroscopy, however it should be noted that this technique has an associated error in the estimates due to the heterogeneity of the chemical structure of the elements in the soil and sediment matrix and the reference samples obtained by chemical methods.</p>


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