scholarly journals Draft Genome Sequence of Tetragenococcus halophilus Strain FBL3, a Probiotic Bacterium Isolated from Galchijeot, a Salted Fermented Food, in the Republic of Korea

2017 ◽  
Vol 5 (18) ◽  
Author(s):  
Eiseul Kim ◽  
Jae-Hwan Kim ◽  
Seung-Min Yang ◽  
Seung-Man Suh ◽  
Hyun-Joong Kim ◽  
...  
Keyword(s):  
Lactic Acid ◽  
Lactic Acid Bacterium ◽  
Draft Genome ◽  
Probiotic Bacterium ◽  
Fermented Food ◽  
Republic Of Korea ◽  
Total Size ◽  
Content Type ◽  
Tetragenococcus Halophilus ◽  
The Republic

ABSTRACT Tetragenococcus halophilus strain FBL3 is a lactic acid bacterium isolated from galchijeot, a fermented food made from the salted guts of the hairtail fish, in the Republic of Korea. The draft genome of T. halophilus strain FBL3 comprised 87 contigs (≥1 kb) with a total size of 2,420,904 bp and a G+C content of 38.5%.

scholarly journals Draft Genome Sequence of Pediococcus pentosaceus Strain FBL2, a Probiotic Bacterium Isolated from Jogaejeot, a Salted Fermented Food, in the Republic of Korea

2017 ◽  
Vol 5 (18) ◽  
Author(s):  
Eiseul Kim ◽  
Jae-Hwan Kim ◽  
Saet-Byul Park ◽  
Mi-ju Kim ◽  
Hyun-Joong Kim ◽  
...  
Keyword(s):  
Lactic Acid ◽  
Lactic Acid Bacterium ◽  
Genome Size ◽  
Draft Genome ◽  
Probiotic Bacterium ◽  
Fermented Food ◽  
Republic Of Korea ◽  
Pediococcus Pentosaceus ◽  
Content Type ◽  
The Republic

ABSTRACT Pediococcus pentosaceus strain FBL2 is a lactic acid bacterium isolated in the Republic of Korea from jogaejeot, a salted fermented food made with shellfish. P. pentosaceus strain FBL2 comprised 54 contigs (≥1 kb) and had a total draft genome size of 1,934,229 bp with a G+C content of 37.2%.

scholarly journals Draft Genome Sequences of 3 Strains of Apilactobacillus kunkeei Isolated from the Bee Gut Microbial Community

2021 ◽  
Vol 10 (13) ◽  
Author(s):  
Julien Crovadore ◽  
Romain Chablais ◽  
François Raffini ◽  
Bastien Cochard ◽  
Martine Hänzi ◽  
...  
Keyword(s):  
Lactic Acid ◽  
Microbial Community ◽  
Lactic Acid Bacterium ◽  
Draft Genome ◽  
Fermented Food ◽  
Genome Sequences ◽  
Content Type ◽  
Gut Microbial Community

ABSTRACT Apilactobacillus kunkeei is a fructophilic lactic acid bacterium found in fructose-rich environments such as flowers, fruits, fermented food, honey, and honeydew, as well as in the guts of fructose-feeding insects. We report here the draft genome sequences of three Apilactobacillus kunkeei strains isolated from the gut microbial community of three honeybees.

scholarly journals Draft Genome Sequence of Enterococcus faecalis DD14, a Bacteriocinogenic Lactic Acid Bacterium with Anti-Clostridium Activity

2017 ◽  
Vol 5 (30) ◽  
Author(s):  
Yanath Belguesmia ◽  
Valérie Leclère ◽  
Matthieu Duban ◽  
Eric Auclair ◽  
Djamel Drider
Keyword(s):  
Lactic Acid ◽  
Lactic Acid Bacterium ◽  
Enterococcus Faecalis ◽  
Genome Sequence ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Coding Sequences ◽  
Content Type ◽  
Gram Positive Bacteria ◽  
Healthy Newborn

ABSTRACT We report the draft genome sequence of Enterococcus faecalis DD14, a strain isolated from meconium of a healthy newborn at Roubaix Hospital (France). The strain displayed antagonism against a set of Gram-positive bacteria through concomitant production of lactic acid and bacteriocin. The genome has a size of 2,893,365 bp and a 37.3% G+C ratio and is predicted to contain at least 2,755 coding sequences and 62 RNAs.

scholarly journals Draft Genome Sequences of 12 Leuconostoc carnosum Strains Isolated from Cooked Ham Packaged in a Modified Atmosphere and from Fresh Sausages

2020 ◽  
Vol 9 (2) ◽  
Author(s):  
Francesco Candeliere ◽  
Stefano Raimondi ◽  
Gloria Spampinato ◽  
Moon Yue Feng Tay ◽  
Alberto Amaretti ◽  
...  
Keyword(s):  
Lactic Acid ◽  
Lactic Acid Bacterium ◽  
Draft Genome ◽  
Modified Atmosphere ◽  
Genome Sequences ◽  
Content Type ◽  
Cooked Ham ◽  
Leuconostoc Carnosum ◽  
Bacteriocin Genes

Leuconostoc carnosum is a lactic acid bacterium that preferentially colonizes meat. In this work, we present the draft genome sequences of 12 Leuconostoc carnosum strains isolated from modified-atmosphere-packaged cooked ham and fresh sausages. Three strains harbor bacteriocin genes.

scholarly journals Genome Sequence of Lactobacillus sunkii Strain CG_D

2017 ◽  
Vol 5 (2) ◽  
Author(s):  
Christina Gabris ◽  
Anja Poehlein ◽  
Frank R. Bengelsdorf ◽  
Rolf Daniel ◽  
Peter Dürre
Keyword(s):  
Lactic Acid ◽  
Lactic Acid Bacterium ◽  
Genome Sequence ◽  
Draft Genome ◽  
Gram Positive ◽  
Content Type ◽  
Protein Encoding ◽  
Rna Genes

ABSTRACT Lactobacillus sunkii CG_D is a rod-shaped, Gram-positive, and heterofermentative lactic acid bacterium. The draft genome of L. sunkii strain CG_D comprises 2,794,637 bp with an average G+C content of 42.03%. The genome harbors 2,662 predicted protein-encoding, and 71 RNA genes.

Lactobacillus yonginensis sp. nov., a lactic acid bacterium with ginsenoside converting activity isolated from Kimchi

2013 ◽  
Vol 63 (Pt_9) ◽  
pp. 3274-3279 ◽  
Author(s):  
Eun-Ji Yi ◽  
Jung-Eun Yang ◽  
Jung Min Lee ◽  
YongJin Park ◽  
Sang-Yong Park ◽  
...  
Keyword(s):  
Lactic Acid ◽  
Lactic Acid Bacterium ◽  
Type Species ◽  
Gene Sequence ◽  
Sequence Similarity ◽  
Lactobacillus Brevis ◽  
Fermented Food ◽  
Rrna Gene ◽  
Content Type ◽  
Link Type

A Gram-reaction-positive, non-motile, non-spore-forming, catalase-negative, facultatively anaerobic, rod-shaped, β-glucosidase-producing lactic acid bacterium, designated strain THK-V8T, was isolated from the Korean fermented food, Kimchi, and its taxonomic position was investigated by using a polyphasic approach. Strain THK-V8T was able to grow at 4–40 °C (optimum, 30 °C) and pH 4.0–7.0 (optimum, pH 6.0). Strain THK-V8T had the ability to transform ginsenoside Rb1 to Rd. On the basis of 16S rRNA gene sequence similarity data, strain THK-V8T was shown to belong to the genus Lactobacillus . Strain THK-V8T was related to Lactobacillus koreensis DCY50T (98.8 % sequence similarity), Lactobacillus parabrevis LMG 11984T (97.7 %), Lactobacillus senmaizukei L13T (97.5 %), Lactobacillus hammesii TMW1.1236T (97.3 %) and Lactobacillus brevis ATCC 14687T (97.2 %). Subsequently, sequence analysis of the RNA polymerase alpha subunit gene (rpoA) confirmed that strain THK-V8T showed a maximum rpoA gene sequence similarity value of 93 % with Lactobacillus brevis LMG 6906T. The G+C content of the genomic DNA was 47.8 mol%. The DNA–DNA hybridization values between strain THK-V8T and Lactobacillus parabrevis DCY50T and Lactobacillus parabrevis LMG 11984T were 46.1±4.9 % and 10.6±2.9 %, respectively. The major fatty acids were summed feature 7 (comprised of C19 : 0 cyclo ω10c/19ω6), C14 : 0, C16 : 0 and C18 : 1ω9c. The cell wall peptidoglycan was of the A4α l-Lys–d-Asp type. The phenotypic and molecular properties indicated that strain THK-V8T represents a novel species within the genus Lactobacillus , for which the name Lactobacillus yonginensis sp. nov. is proposed. The type strain is THK-V8T ( = KACC 16236T = JCM 18023T).

scholarly journals Genome Sequence of Lactobacillus plantarum JMCC0013, Isolated from Traditional Chinese Fermented Milk

2018 ◽  
Vol 6 (23) ◽  
Author(s):  
Shijie Wang ◽  
Lili Feng ◽  
Dong Zhang ◽  
Yuling Xue ◽  
Yiping Xun ◽  
...  
Keyword(s):  
Lactic Acid ◽  
Lactobacillus Plantarum ◽  
Genome Sequence ◽  
Draft Genome ◽  
Genomic Analysis ◽  
Fermented Milk ◽  
Fermented Food ◽  
Draft Genome Sequence ◽  
Content Type ◽  
Precious Resource

ABSTRACT Fermented food products have been consumed for thousands of years in China, so fermented Chinese foods may contain huge lactic acid bacterial resources. Here, we report the draft genome sequence of a Lactobacillus plantarum isolate, JMCC0013, collected from traditional Chinese fermented milk, which provides a precious resource for the genomic analysis of Lactobacillus strains.

scholarly journals Draft Genome Sequences of 11 Lactococcus lactis subsp. cremoris Strains

2017 ◽  
Vol 5 (11) ◽  
Author(s):  
Michiel Wels ◽  
Lennart Backus ◽  
Jos Boekhorst ◽  
Annereinou Dijkstra ◽  
Marke Beerthuyzen ◽  
...  
Keyword(s):  
Lactic Acid ◽  
Lactic Acid Bacterium ◽  
Lactococcus Lactis ◽  
Dairy Products ◽  
Draft Genome ◽  
Genome Sequences ◽  
Content Type ◽  
Lactococcus Lactis Subsp

ABSTRACT The lactic acid bacterium Lactococcus lactis is widely used for the fermentation of dairy products. Here, we present the draft genome sequences of 11 L. lactis subsp. cremoris strains isolated from different environments.

scholarly journals Draft Genome Sequence of Pediococcus acidilactici Strain LPBC161, Isolated from Mature Coffee Cherries during Natural Fermentation

2019 ◽  
Vol 8 (16) ◽  
Author(s):  
Elisângela S. M. Muynarsk ◽  
Gilberto V. de Melo Pereira ◽  
Dany Mesa ◽  
Vanete Thomaz-Soccol ◽  
Júlio C. Carvalho ◽  
...  
Keyword(s):  
Lactic Acid ◽  
Lactic Acid Bacteria ◽  
Lactic Acid Bacterium ◽  
Genome Sequence ◽  
Draft Genome ◽  
Draft Genome Sequence ◽  
Pediococcus Acidilactici ◽  
Content Type ◽  
Natural Fermentation ◽  
Mechanisms Of Adaptation

Here, we report the draft genome sequence of Pediococcus acidilactici strain LPBC161, a lactic acid bacterium isolated from mature coffee cherries in Brazil. The genome sequence of P. acidilactici LPBC161 provides valuable information on the mechanisms of adaptation and metabolism of lactic acid bacteria (LAB) in the environment and stressor factors of coffee processing.

scholarly journals Draft Genome Sequence of Lactobacillus helveticus Lh 23, Isolated from Natural Whey Starter

2020 ◽  
Vol 9 (37) ◽  
Author(s):  
Gaia Bertani ◽  
Daniela Bassi ◽  
Claudia Cortimiglia ◽  
Monica Gatti ◽  
Pier Sandro Cocconcelli ◽  
...  
Keyword(s):  
Lactic Acid ◽  
Lactic Acid Bacterium ◽  
Genome Sequence ◽  
Metabolic Pathways ◽  
Draft Genome ◽  
Starter Culture ◽  
Gc Content ◽  
Lactobacillus Helveticus ◽  
Draft Genome Sequence ◽  
Content Type

ABSTRACT Lactobacillus helveticus is a thermophilic lactic acid bacterium that is widely employed as a starter culture for manufacturing several Swiss and Italian hard-cooked cheeses. The sequencing of L. helveticus Lh 23, which consists of 2,100,230 bp with a GC content of 36.5%, reveals industrially useful traits and interesting metabolic pathways.

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