scholarly journals Complete Genome Sequence of Southern tomato virus Identified in China Using Next-Generation Sequencing

2015 ◽  
Vol 3 (5) ◽  
Author(s):  
Chellappan Padmanabhan ◽  
Yi Zheng ◽  
Rugang Li ◽  
Shu-E Sun ◽  
Deyong Zhang ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Rna Virus ◽  
The United States ◽  
Chinese Isolate ◽  
Double Stranded Rna ◽  
Rna Deep Sequencing ◽  
Small Rna Deep Sequencing ◽  
Generation Sequencing

The complete genome sequence of Southern tomato virus (STV), a double-stranded RNA virus that affects tomato in China, was determined using small RNA deep sequencing. This Chinese isolate shares 99% sequence identity to other isolates from Mexico, France, Spain, and the United States. This is the first report of STV infecting tomatoes in Asia.

scholarly journals Complete Genome Sequence of Seneca Valley Virus CH-01-2015 Identified in China

2016 ◽  
Vol 4 (1) ◽  
Author(s):  
Qiwen Wu ◽  
Xiaoya Zhao ◽  
Yanshan Chen ◽  
Xiaoming He ◽  
Guanqun Zhang ◽  
...  
Keyword(s):  
United States ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Rna Virus ◽  
The United States ◽  
Chinese Isolate ◽  
Sequence Identity ◽  
Seneca Valley Virus ◽  
Vesicular Disease

The complete genome sequence of Seneca Valley virus (SVV), a single-stranded RNA virus that causes porcine vesicular disease in China, has been sequenced and analyzed. This Chinese isolate shares 94.4 to 97.1% sequence identity to another 8 strains from Canada, Brazil, and the United States. This is the first report of SVV infecting swine in China.

scholarly journals Complete Genome Sequence of a Bell Pepper Endornavirus Isolate from Canada

2015 ◽  
Vol 3 (4) ◽  
Author(s):  
Bin Chen ◽  
Mark Bernards ◽  
Aiming Wang
Keyword(s):  
Next Generation Sequencing ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Small Rnas ◽  
Complete Genome ◽  
Rna Virus ◽  
Bell Pepper ◽  
Pepper Plant ◽  
Double Stranded Rna ◽  
Generation Sequencing

Bell pepper endornavirus (BPEV) is a double-stranded RNA virus infecting economically important crops, such as peppers. Next-generation sequencing of small RNAs extracted from the leaves of a pepper plant showing mild viral symptoms, along with subsequent analysis, identified BPEV. The complete genome of this isolate was cloned and sequenced.

scholarly journals Complete Genome Sequence of a Little Cherry Virus-2 Isolate from Sweet Cherry in China

2019 ◽  
Vol 8 (37) ◽  
Author(s):  
Dongzi Zhu ◽  
Jiawei Wang ◽  
Xiaojuan Zong ◽  
Yue Tan ◽  
Hairong Wei ◽  
...  
Keyword(s):  
Phylogenetic Analysis ◽  
Genome Sequence ◽  
Small Rna ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Close Relationships ◽  
Sweet Cherry ◽  
Rt Pcr ◽  
Rna Deep Sequencing ◽  
Small Rna Deep Sequencing

The first complete genome sequence of a little cherry virus-2 (LChV-2-TA) isolate from China was determined using small RNA deep sequencing combined with overlapping reverse transcriptase PCR (RT-PCR). Phylogenetic analysis revealed that LChV-2-TA grouped in a well-supported cluster with members of the genus Ampelovirus with close relationships to previously reported LChV-2 isolates.

scholarly journals Complete Genome Sequence of a Fusarium graminearum Double-Stranded RNA Virus in a Newly Proposed Family, Alternaviridae

2018 ◽  
Vol 6 (8) ◽  
Author(s):  
Hao He ◽  
Xiaoguang Chen ◽  
Pengfei Li ◽  
Dewen Qiu ◽  
Lihua Guo
Keyword(s):  
Phylogenetic Analysis ◽  
Fusarium Graminearum ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Rna Virus ◽  
Phytopathogenic Fungus ◽  
Double Stranded Rna ◽  
First Report ◽  
The Family

ABSTRACT We describe here a double-stranded RNA mycovirus, termed Fusarium graminearum alternavirus 1 (FgAV1/AH11), from the isolate AH11 of the phytopathogenic fungus F. graminearum . Phylogenetic analysis showed that FgAV1/AH11 belongs to a newly proposed family, Alternaviridae . This is the first report of a mycovirus in the family Alternaviridae that infects F. graminearum .

scholarly journals Complete Genome Sequence of a Double-Stranded RNA Virus from Avocado

2011 ◽  
Vol 86 (2) ◽  
pp. 1282-1283 ◽  
Author(s):  
F. Villanueva ◽  
S. Sabanadzovic ◽  
R. A. Valverde ◽  
J. Navas-Castillo
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Rna Virus ◽  
Double Stranded Rna

scholarly journals Complete Genome Sequence of the Pathogenic Vibrio vulnificus Type Strain ATCC 27562

2017 ◽  
Vol 5 (35) ◽  
Author(s):  
Douglas B. Rusch ◽  
Dean A. Rowe-Magnus
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Type Strain ◽  
Vibrio Vulnificus ◽  
Foodborne Pathogen ◽  
The United States ◽  
Environmental Isolates ◽  
Content Type ◽  
Pathogenic Vibrio

ABSTRACT Vibrio vulnificus has the highest death rate and economic burden per case of any foodborne pathogen in the United States. A complete genome sequence of the type strain promotes comparative analyses with other clinical and environmental isolates, improving our understanding of this important human pathogen and successful environmental organism.

scholarly journals Complete Genome Sequence of a Human Norovirus Strain from the United States Classified as Genotype GII.P6_GII.6

2018 ◽  
Vol 6 (22) ◽  
Author(s):  
Haifeng Chen ◽  
Shiliang Wang ◽  
Weimin Wang
Keyword(s):  
United States ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Gc Content ◽  
The United States ◽  
Virus Genome ◽  
Full Genome Sequence ◽  
Full Genome ◽  
Virus Genotype

ABSTRACT We report here the complete genome sequence of a GII.6 norovirus strain detected in a clinical fecal specimen from the United States. The virus genome has a length of 7,547 bp and a GC content of 50.1%. Complete norovirus genotyping of the full-genome sequence identified the virus genotype as GII.P6_GII.6.

scholarly journals Complete Genome Sequence of Matlo Bat Lyssavirus

2021 ◽  
Vol 10 (20) ◽  
Author(s):  
Colyn S. Grobler ◽  
Jessica Coertse ◽  
Wanda Markotter
Keyword(s):  
South Africa ◽  
Next Generation Sequencing ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Novel Species ◽  
Whole Genome Sequence ◽  
Whole Genome ◽  
Sequencing Technologies ◽  
Generation Sequencing

ABSTRACT The genus Lyssavirus includes rabies virus as well as multiple diverse and recently described novel species. Using next-generation sequencing technologies, we have obtained the whole-genome sequence of Matlo bat lyssavirus, which was isolated from a Natal long-fingered bat (Miniopterus natalensis) in South Africa.

scholarly journals The Complete Genome Sequence of Bacillus anthracis Ames “Ancestor”

2008 ◽  
Vol 191 (1) ◽  
pp. 445-446 ◽  
Author(s):  
Jacques Ravel ◽  
Lingxia Jiang ◽  
Scott T. Stanley ◽  
Mark R. Wilson ◽  
R. Scott Decker ◽  
...  
Keyword(s):  
United States ◽  
Bacillus Anthracis ◽  
Genome Sequence ◽  
Cold Storage ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
The United States ◽  
Pathogenic Bacterium ◽  
The Subject ◽  
The Ideal

ABSTRACT The pathogenic bacterium Bacillus anthracis has become the subject of intense study as a result of its use in a bioterrorism attack in the United States in September and October 2001. Previous studies suggested that B. anthracis Ames Ancestor, the original Ames fully virulent plasmid-containing isolate, was the ideal reference. This study describes the complete genome sequence of that original isolate, derived from a sample kept in cold storage since 1981.

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