scholarly journals Complete Genome Sequence of a Little Cherry Virus-2 Isolate from Sweet Cherry in China

2019 ◽  
Vol 8 (37) ◽  
Author(s):  
Dongzi Zhu ◽  
Jiawei Wang ◽  
Xiaojuan Zong ◽  
Yue Tan ◽  
Hairong Wei ◽  
...  
Keyword(s):  
Phylogenetic Analysis ◽  
Genome Sequence ◽  
Small Rna ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Close Relationships ◽  
Sweet Cherry ◽  
Rt Pcr ◽  
Rna Deep Sequencing ◽  
Small Rna Deep Sequencing

The first complete genome sequence of a little cherry virus-2 (LChV-2-TA) isolate from China was determined using small RNA deep sequencing combined with overlapping reverse transcriptase PCR (RT-PCR). Phylogenetic analysis revealed that LChV-2-TA grouped in a well-supported cluster with members of the genus Ampelovirus with close relationships to previously reported LChV-2 isolates.

scholarly journals Complete Genomic Characterization of Plum bark necrosis stem pitting–associated virus Infecting Sweet Cherry in China

2016 ◽  
Vol 4 (3) ◽  
Author(s):  
Jiawei Wang ◽  
Ying Zhai ◽  
Weizhen Liu ◽  
Dongzi Zhu ◽  
Hanu R. Pappu ◽  
...  
Keyword(s):  
Deep Sequencing ◽  
Small Rna ◽  
Sweet Cherry ◽  
Rt Pcr ◽  
Rna Deep Sequencing ◽  
Genomic Characterization ◽  
Small Rna Deep Sequencing ◽  
Stem Pitting ◽  
Complete Genomic

Plum bark necrosis stem pitting–associated virus (PBNSPaV) causes the plum bark necrosis stem pitting–associated disease. We obtained the complete genome of a PBNSPaV isolate (PBNSPaV-TA) using small RNA deep sequencing followed by overlapping RT-PCR. To our knowledge, this is the first report of a completed genome of PBNSPaV identified from cherry trees.

scholarly journals Complete Genome Sequence of Southern tomato virus Identified in China Using Next-Generation Sequencing

2015 ◽  
Vol 3 (5) ◽  
Author(s):  
Chellappan Padmanabhan ◽  
Yi Zheng ◽  
Rugang Li ◽  
Shu-E Sun ◽  
Deyong Zhang ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Rna Virus ◽  
The United States ◽  
Chinese Isolate ◽  
Double Stranded Rna ◽  
Rna Deep Sequencing ◽  
Small Rna Deep Sequencing ◽  
Generation Sequencing

The complete genome sequence of Southern tomato virus (STV), a double-stranded RNA virus that affects tomato in China, was determined using small RNA deep sequencing. This Chinese isolate shares 99% sequence identity to other isolates from Mexico, France, Spain, and the United States. This is the first report of STV infecting tomatoes in Asia.

scholarly journals Complete Genome Sequence of Papaya Ringspot Virus Isolated from Genetically Modified Papaya in Hainan Island, China

2015 ◽  
Vol 3 (5) ◽  
Author(s):  
Guangyuan Zhao ◽  
Pu Yan ◽  
Wentao Shen ◽  
Decai Tuo ◽  
Xiaoying Li ◽  
...  
Keyword(s):  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Virus Isolate ◽  
Genetically Modified ◽  
Hainan Island ◽  
Ringspot Virus ◽  
Papaya Ringspot Virus ◽  
Rt Pcr ◽  
Sequence Identity

The complete genome sequence (10,326 nucleotides) of a papaya ringspot virus isolate infecting genetically modified papaya in Hainan Island of China was determined through reverse transcription (RT)-PCR. The virus shares 92% nucleotide sequence identity with the isolate that is unable to infect PRSV-resistant transgenic papaya.

scholarly journals Complete Genome Sequence of Porcine Deltacoronavirus Strain CH/JXJGS01/2016, Isolated in Jiangxi Province, China, 2016

2017 ◽  
Vol 5 (34) ◽  
Author(s):  
Min Zhang ◽  
Yu Ye ◽  
Wang Gong ◽  
Nannan Guo ◽  
Fanfan Zhang ◽  
...  
Keyword(s):  
Phylogenetic Analysis ◽  
Amino Acid ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Jiangxi Province ◽  
Accession Number ◽  
Chinese Strain

ABSTRACT The complete genome sequence of a variant of porcine deltacoronavirus, isolated from a diarrheal piglet and designated CH/JXJGS01/2016, was sequenced and analyzed. Phylogenetic analysis demonstrated that CH/JXJGS01/2016 shares the highest nucleotide and amino acid identities with the Chinese strain NH (GenBank accession number KU981059).

Complete genome sequence and phylogenetic analysis of Senecavirus A isolated in Northeast China in 2016

2017 ◽  
Vol 162 (10) ◽  
pp. 3173-3176 ◽  
Author(s):  
Haiwei Wang ◽  
Chen Li ◽  
Bo Zhao ◽  
Tiangang Yuan ◽  
Decheng Yang ◽  
...  
Keyword(s):  
Phylogenetic Analysis ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Northeast China

scholarly journals Complete Genome Sequence of a Zika Virus Strain Isolated from the Serum of an Infected Patient in Thailand in 2006

2018 ◽  
Vol 6 (10) ◽  
Author(s):  
Narong Nitatpattana ◽  
Kumchol Chaiyo ◽  
Supoth Rajakam ◽  
Kanya Poolam ◽  
Kusuma Chansiprasert ◽  
...  
Keyword(s):  
Phylogenetic Analysis ◽  
Genome Sequence ◽  
Virus Strain ◽  
Zika Virus ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Infected Patient ◽  
Vero Cells ◽  
Asian Lineage

ABSTRACT The complete genome of Zika virus (ZIKV) strain CVD_06-274 was isolated from the serum of an infected patient in Thailand in 2006. Phylogenetic analysis showed that this strain belongs to the Asian lineage and also high titers in Vero cells (RCB 10-87). It has potential for development as an inactivated ZIKV vaccine.

scholarly journals Characterization of an Avian Influenza Virus H9N2 Strain Isolated from Dove in Southern China

2018 ◽  
Vol 6 (18) ◽  
pp. e00369-18 ◽  
Author(s):  
Dan Li ◽  
ZhengTing Li ◽  
Zhixun Xie ◽  
Meng Li ◽  
Zhiqin Xie ◽  
...  
Keyword(s):  
Phylogenetic Analysis ◽  
Influenza Virus ◽  
Avian Influenza ◽  
Avian Influenza Virus ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Wild Bird ◽  
Southern China

ABSTRACT We report here the complete genome sequence of strain H9N2, an avian influenza virus (AIV) isolated from dove in Guangxi, China. Phylogenetic analysis showed that it was a novel reassortant AIV derived from chicken, duck, and wild bird. This finding provides useful information for understanding the H9N2 subtype of AIV circulating in southern China.

scholarly journals Complete Genome Sequence of a Novel Reassortant H6N8 Avian Influenza Virus Isolated from Wild Waterfowl in Poyang Lake, China

2017 ◽  
Vol 5 (5) ◽  
Author(s):  
Guangyu Hou ◽  
Jinping Li ◽  
Cheng Peng ◽  
Suchun Wang ◽  
Jiming Chen ◽  
...  
Keyword(s):  
Phylogenetic Analysis ◽  
Influenza Virus ◽  
Avian Influenza ◽  
Avian Influenza Virus ◽  
Genome Sequence ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Poyang Lake ◽  
Domestic Ducks ◽  
Wild Waterfowl

ABSTRACT Here, we report the complete genome sequence of an H6N8 avian influenza virus (AIV) isolated from wild waterfowl in Poyang Lake, China, in 2016. Phylogenetic analysis showed that it was a novel reassortant AIV between domestic ducks and wild waterfowl. The finding of this study is helpful for our understanding of the ecology and the evolutionary characteristics of H6 subtypes of AIV in birds.

scholarly journals Complete Genome Sequence of a Genotype XVII Newcastle Disease Virus, Isolated from an Apparently Healthy Domestic Duck in Nigeria

2016 ◽  
Vol 4 (1) ◽  
Author(s):  
Ismaila Shittu ◽  
Poonam Sharma ◽  
Tony M. Joannis ◽  
Jeremy D. Volkening ◽  
Georgina N. Odaibo ◽  
...  
Keyword(s):  
Phylogenetic Analysis ◽  
Newcastle Disease Virus ◽  
Disease Virus ◽  
Genome Sequence ◽  
Newcastle Disease ◽  
Complete Genome Sequence ◽  
Complete Genome ◽  
Protein Gene ◽  
Domestic Duck ◽  
Apparently Healthy

The first complete genome sequence of a strain of Newcastle disease virus (NDV) of genotype XVII is described here. A velogenic strain (duck/Nigeria/903/KUDU-113/1992) was isolated from an apparently healthy free-roaming domestic duck sampled in Kuru, Nigeria, in 1992. Phylogenetic analysis of the fusion protein gene and complete genome classified the isolate as a member of NDV class II, genotype XVII.

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