scholarly journals Genome Sequences of Four Subcluster L2 Mycobacterium Phages, Finemlucis, Miley16, Wilder, and Zakai

2017 ◽  
Vol 5 (46) ◽  
Author(s):  
Christopher D. Herren ◽  
Alexandra Peister ◽  
Timothy S. Breton ◽  
Maggie S. Hill ◽  
Marcy S. Anderson ◽  
...  
Keyword(s):  
Mycobacterium Smegmatis ◽  
Genome Sequences ◽  
Protein Coding ◽  
Content Type ◽  
Putative Protein ◽  
Protein Coding Genes

ABSTRACT Four subcluster L2 mycobacteriophages, Finemlucis, Miley16, Wilder, and Zakai, that infect Mycobacterium smegmatis mc2155 were isolated. The four phages are closely related to each other and code for 12 to 14 tRNAs and 130 to 132 putative protein-coding genes, including tyrosine integrases, cro, immunity repressors, and excise genes involved in the establishment of lysogeny.

scholarly journals Complete Genome Sequences of 12 B1 Cluster Mycobacteriophages, Gareth, JangoPhett, Kailash, MichaelPhcott, PhenghisKhan, Phleuron, Phergie, PhrankReynolds, PhrodoBaggins, Phunky, Vaticameos, and Virapocalypse

2019 ◽  
Vol 8 (8) ◽  
Author(s):  
Kristofer A. Apellido ◽  
Divya Balchander ◽  
Matthew C. Erlich ◽  
Jakub K. Gocal ◽  
Wiktoria A. Gocal ◽  
...  
Keyword(s):  
Mycobacterium Smegmatis ◽  
Complete Genome ◽  
Soil Samples ◽  
Genome Sequences ◽  
Protein Coding ◽  
Content Type ◽  
Putative Protein ◽  
Protein Coding Genes

Twelve B1 cluster mycobacteriophages were isolated from soil samples collected in Philadelphia, PA, USA, using Mycobacterium smegmatis mc2 155 as a host, and were sequenced. The genome sequences range in size from 66,887 bp to 68,953 bp in length and have between 99 and 105 putative protein-coding genes.

scholarly journals Genome Sequences of Subcluster K5 Mycobacteriophages AlleyCat, Edugator, and Guillsminger

2017 ◽  
Vol 5 (45) ◽  
Author(s):  
Rodney A. King ◽  
Tina M. Slowan-Pomeroy ◽  
Jodi E. Thomas ◽  
Tithe Ahmed ◽  
Katie L. Alexander ◽  
...  
Keyword(s):  
Mycobacterium Smegmatis ◽  
Soil Samples ◽  
Genome Sequences ◽  
Protein Coding ◽  
Content Type ◽  
Protein Coding Genes

ABSTRACT Bacteriophages AlleyCat, Edugator, and Guillsminger were isolated on Mycobacterium smegmatis mc2155 from enriched soil samples. All are members of mycobacteriophage subcluster K5, with genomes of 62,112 to 63,344 bp. Each genome contains 92 to 99 predicted protein-coding genes and one tRNA. Guillsminger is the first mycobacteriophage to carry an IS1380 family transposon.

scholarly journals Genome Sequences of Cluster K Mycobacteriophages DrHayes, Urkel, and SamuelLPlaqson

2017 ◽  
Vol 5 (16) ◽  
Author(s):  
Kirk R. Anders ◽  
Alex M. Murphy ◽  
William F. Ettinger ◽  
Douglas Kempthorne ◽  
Charles Kittridge ◽  
...  
Keyword(s):  
Mycobacterium Smegmatis ◽  
Room Temperature ◽  
Trna Gene ◽  
Soil Samples ◽  
Genome Sequences ◽  
Protein Coding ◽  
Content Type ◽  
Protein Coding Genes

ABSTRACT Mycobacteriophages DrHayes, Urkel, and SamuelLPlaqson were isolated from soil samples in Spokane, WA, using Mycobacterium smegmatis mc2155 grown at room temperature. The three genomes differ by only a few nucleotides, are 60,526 bp long, have 97 predicted protein-coding genes and one tRNA gene, and are members of subcluster K1.

scholarly journals Genome Sequences of the Mycobacteriophages Awesomesauce and LastJedi

2020 ◽  
Vol 9 (34) ◽  
Author(s):  
Madison E. Davis ◽  
Véronique A. Delesalle ◽  
Kayla D. Blankenship ◽  
Jeffrey T. Good ◽  
Clayr M. Kroenke ◽  
...  
Keyword(s):  
Nucleotide Sequence ◽  
Mycobacterium Smegmatis ◽  
Sequence Comparison ◽  
Whole Genome ◽  
Genome Sequences ◽  
Protein Coding ◽  
Content Type ◽  
Nucleotide Sequence Comparison ◽  
Protein Coding Genes

ABSTRACT Bacteriophages Awesomesauce and LastJedi infect Mycobacterium smegmatis mc2155. While the Awesomesauce genome is 57,054 bp with 94 protein-coding genes, the LastJedi genome is 55,149 bp with 94 protein-coding genes. Nucleotide sequence comparison in Phamerator detected synteny between Awesomesauce gp49 to gp61 and singleton LilSpotty. Whole-genome BLASTn alignments revealed that LastJedi strongly resembles Clifton (99.41% identity).

scholarly journals Mitochondrial Genome Sequences of Diorhabda carinata and Diorhabda carinulata, Two Beetle Species Introduced to North America for Biological Control

2019 ◽  
Vol 8 (35) ◽  
Author(s):  
A. R. Stahlke ◽  
A. Z. Ozsoy ◽  
D. W. Bean ◽  
P. A. Hohenlohe
Keyword(s):  
Biological Control ◽  
North America ◽  
Mitochondrial Genome ◽  
Noncoding Region ◽  
Beetle Species ◽  
Genome Sequences ◽  
Protein Coding ◽  
Content Type ◽  
Protein Coding Genes ◽  
Genome Assemblies

We announce the complete circularized mitochondrial genome assemblies of Diorhabda carinata and Diorhabda carinulata, beetle species introduced to North America for the biological control of invasive shrubs of the genus Tamarix L. (Tamaricaceae). The assemblies (16,232 and 16,298 bp, respectively) each comprise 13 protein-coding genes, 22 tRNAs, two rRNAs, and a noncoding region.

scholarly journals Complete Genome Sequence of Klebsiella pneumoniae Myophage Muenster

2021 ◽  
Vol 10 (3) ◽  
Author(s):  
Cody Martin ◽  
Lauren Lessor ◽  
James Clark ◽  
Tram Le ◽  
Jason J. Gill ◽  
...  
Keyword(s):  
Klebsiella Pneumoniae ◽  
Genome Sequence ◽  
Nosocomial Infections ◽  
Complete Genome Sequence ◽  
Protein Coding ◽  
Antibiotic Resistant ◽  
Content Type ◽  
Putative Protein ◽  
Protein Coding Genes ◽  
Tail Fibers

ABSTRACT Klebsiella pneumoniae is associated with antibiotic-resistant nosocomial infections. Here, we present the annotated genome sequence of the Klebsiella jumbo phage Muenster. The Muenster genome sequence (346,937 bp) encodes 6 tRNAs and 561 putative protein-coding genes, including 9 tail fibers, suggesting a genetic mechanism to broaden the host range.

scholarly journals Complete Mitochondrial and Plastid DNA Sequences of the Freshwater Green Microalga Medakamo hakoo

2021 ◽  
Author(s):  
Mari Takusagawa ◽  
Shoichi Kato ◽  
Sachihiro Matsunaga ◽  
Shinichiro Maruyama ◽  
Yayoi Tsujimoto-Inui ◽  
...  
Keyword(s):  
Green Alga ◽  
Dna Sequences ◽  
Plastid Dna ◽  
Mitochondrial Genomes ◽  
Genome Sequences ◽  
Protein Coding ◽  
Putative Protein ◽  
Protein Coding Genes ◽  
Organellar Genome ◽  
Green Microalga

Here we report the complete organellar genome sequences of Medakamo hakoo, a green alga identified in freshwater in Japan. It has 90.8-kb plastid and 36.5-kb mitochondrial genomes containing 80 and 33 putative protein coding genes, respectively, representing the smallest organellar genome among currently known core Trebouxiophyceae.

scholarly journals Draft Genome Sequences of Vibrio alginolyticus Strain S6-61 and Vibrio diabolicus Strain S7-71, Isolated from Corals in the Andaman Sea

2020 ◽  
Vol 9 (8) ◽  
Author(s):  
Sushanta Deb ◽  
Jhasketan Badhai ◽  
Subrata K. Das
Keyword(s):  
Draft Genome ◽  
Vibrio Alginolyticus ◽  
Andaman Sea ◽  
Biosynthesis Pathway ◽  
Genome Sequences ◽  
Protein Coding ◽  
Content Type ◽  
Protein Coding Genes ◽  
Ectoine Biosynthesis ◽  
Pocillopora Verrucosa

We report the draft genome sequences of Vibrio alginolyticus strain S6-61 and Vibrio diabolicus strain S7-71, isolated from the corals Pocillopora verrucosa and Fungia danai, respectively. The genomes of strains S6-61 and S7-71 contain 4,880 and 4,641 protein coding genes, respectively, and harbor genes associated with the ectoine biosynthesis pathway.

scholarly journals Whole-Genome Sequence of Lactobacillus sakei LT-13 Isolated from Moto Starter of Sake

2017 ◽  
Vol 5 (31) ◽  
Author(s):  
Shiro Kato ◽  
Tadao Oikawa
Keyword(s):  
Lactic Acid ◽  
Genome Analysis ◽  
Whole Genome Sequence ◽  
Whole Genome ◽  
Lactobacillus Sakei ◽  
Circular Chromosome ◽  
Protein Coding ◽  
Content Type ◽  
Putative Protein ◽  
Protein Coding Genes

ABSTRACT Lactobacillus sakei strain LT-13 is a lactic acid bacterium isolated from moto starter of Japanese sake. This genome analysis revealed that the genome is composed of a circular chromosome and one plasmid, which contain 1,938 and 8 putative protein-coding genes, respectively.

scholarly journals Genome Sequences of Bacteriophages ClearAsMud and Kauala, Isolated from Microbacterium foliorum

2020 ◽  
Vol 9 (46) ◽  
Author(s):  
Heidi Lin ◽  
Michael Reeves ◽  
Melissa Acevedo ◽  
Kelsey Bass ◽  
Elizabeth Chau ◽  
...  
Keyword(s):  
Southern California ◽  
Genome Sequences ◽  
Protein Coding ◽  
Content Type ◽  
Protein Coding Genes

ABSTRACT Cluster EC ClearAsMud and cluster EA4 Kauala are lytic Siphoviridae bacteriophages that were isolated from soil in southern California using Microbacterium foliorum NRRL B-24224 as the host. The ClearAsMud and Kauala genomes are 52,987 bp and 39,378 bp, respectively, and contain 92 and 56 predicted protein-coding genes, respectively.

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